ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet40f09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X16000.1|HVGLN2 Hordeum vulgare mRNA for glutamine synthetas... 745 0.0
2gb|DQ124212.1| Triticum aestivum plastid glutamine synthetase is... 454 e-124
3gb|DQ124213.1| Triticum aestivum plastid glutamine synthetase is... 383 e-103
4gb|DQ124214.1| Triticum aestivum plastid glutamine synthetase is... 260 3e-66
5emb|X53580.1|HVGLN2R Barley gln mRNA for glutamine synthetase 2 ... 248 1e-62
6emb|X65931.1|ZMGS2 Z.mays mRNA gs2 for glutamine synthatase 127 3e-26
7gb|AY110796.1| Zea mays CL2183_1 mRNA sequence 127 3e-26
8emb|X14246.1|OSSIGS31 Oryza sativa shoot GS2 mRNA for chloroplas... 80 6e-12
9emb|AL662953.3|OSJN00153 Oryza sativa genomic DNA, chromosome 4,... 80 6e-12
10emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4,... 80 6e-12
11gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence 80 6e-12
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 80 6e-12
13dbj|AK099252.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 6e-12
14dbj|AK065491.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 6e-12
15ref|XM_474199.1| Oryza sativa (japonica cultivar-group), predic... 76 9e-11
16gb|AY835456.1| Saccharum officinarum chloroplast glutamine synth... 72 1e-09
17gb|AF005223.1|AF005223 Helianthus annuus chloroplastic glutamine... 58 2e-05
18dbj|AB161716.1| Phragmites australis GS2 mRNA for plastidic glut... 52 0.001
19ref|XM_661336.1| Cryptosporidium hominis TU502 hypothetical prot... 42 1.3
20gb|AC145323.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
21gb|AC145321.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
22gb|AC147358.2| Xenopus tropicalis clone CH216-71J8, complete seq... 40 5.2
23gb|AC147893.2| Xenopus tropicalis clone CH216-36J13, complete se... 40 5.2
24gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 5.2
25gb|AY065571.1|AY065570S2 Zea mays clone tac 907.49 3' Ac inserti... 40 5.2
26gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.2
27dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
28gb|AY207394.1| Homo sapiens unknown protein mRNA, partial sequence 40 5.2
29dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.2
30dbj|AB110698.1| Oryzias latipes OlGC-R2 gene for guanylyl cyclas... 40 5.2
31gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2 
>emb|X16000.1|HVGLN2 Hordeum vulgare mRNA for glutamine synthetase precursor (EC 6.3.1.2)
          Length = 1549

 Score =  745 bits (376), Expect = 0.0
 Identities = 376/376 (100%)
 Strand = Plus / Minus

                                                                        
Query: 13   cctctatgcgattcattatcgttttataataacgtagttctccaaatggactcaggtaca 72
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1549 cctctatgcgattcattatcgttttataataacgtagttctccaaatggactcaggtaca 1490

                                                                        
Query: 73   gtgagtgtacagacccaacagatcaaatggactcagttcaagcggaaaaacacacgcggg 132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1489 gtgagtgtacagacccaacagatcaaatggactcagttcaagcggaaaaacacacgcggg 1430

                                                                        
Query: 133  agtggttctacaaactgtgaggattttgtacaggcagtgccccgacggaaccacaggatc 192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1429 agtggttctacaaactgtgaggattttgtacaggcagtgccccgacggaaccacaggatc 1370

                                                                        
Query: 193  aacaagaatggacggccaacggtctcgccgctcgccgatttattttcttttccccggaag 252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1369 aacaagaatggacggccaacggtctcgccgctcgccgatttattttcttttccccggaag 1310

                                                                        
Query: 253  aagaattcgtccttttttcaggtccttcataccttcagcgccagcttcttggcagcgagg 312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1309 aagaattcgtccttttttcaggtccttcataccttcagcgccagcttcttggcagcgagg 1250

                                                                        
Query: 313  gcctccgcctcgagggtcggctcccacaggatcgtggtctcggccagcagcgccgtcacg 372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1249 gcctccgcctcgagggtcggctcccacaggatcgtggtctcggccagcagcgccgtcacg 1190

                            
Query: 373  gtgtacgggtccatgt 388
            ||||||||||||||||
Sbjct: 1189 gtgtacgggtccatgt 1174
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>gb|DQ124212.1| Triticum aestivum plastid glutamine synthetase isoform GS2a (GS2)
            mRNA, complete cds; nuclear gene for plastid product
          Length = 1713

 Score =  454 bits (229), Expect = e-124
 Identities = 328/357 (91%), Gaps = 13/357 (3%)
 Strand = Plus / Minus

                                                                        
Query: 36   ttataataacgtagttctccaaatggactcaggtacagtgagtgtacagacccaacagat 95
            |||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct: 1706 ttataataacgtagttctccgaatggactcaggtacagggattgtacagacccaacagat 1647

                                                                        
Query: 96   caaatggactcagttcaagcggaaaaacacacgcgggagtggttctacaaactgtgagga 155
            ||||||||||||||||||||| |||||||  ||   ||| |||||||||||| |||| ||
Sbjct: 1646 caaatggactcagttcaagcgaaaaaacatgcg---gagcggttctacaaaccgtgaaga 1590

                                                                        
Query: 156  ttttgtacaggcagtgccccgacggaaccacaggatcaacaagaatggacggccaacg-- 213
            |||||||||| |||||||||||||||||||||||||||||||||||||||| |  |||  
Sbjct: 1589 ttttgtacagacagtgccccgacggaaccacaggatcaacaagaatggacgacggacgaa 1530

                                                                        
Query: 214  --gtctcgccgctcgccgatttattttcttttccccggaagaagaattcgtccttttttc 271
              | |||||| | |||||||||||||||||||||||   ||||||||||| ||||||  |
Sbjct: 1529 cagcctcgccac-cgccgatttattttcttttcccc---agaagaattcggcctttt--c 1476

                                                                        
Query: 272  aggtccttcataccttcagcgccagcttcttggcagcgagggcctccgcctcgagggtcg 331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1475 aggtccttcataccttcagcgccagcttcttggcagcgagggcctccgcctcgagggtcg 1416

                                                                     
Query: 332  gctcccacaggatcgtggtctcggccagcagcgccgtcacggtgtacgggtccatgt 388
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1415 gctcccacaggatcgtggtctcggccagcagcgccgtcacggtgtacgggtccatgt 1359
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>gb|DQ124213.1| Triticum aestivum plastid glutamine synthetase isoform GS2b (GS2)
            mRNA, complete cds; nuclear gene for plastid product
          Length = 1593

 Score =  383 bits (193), Expect = e-103
 Identities = 290/315 (92%), Gaps = 13/315 (4%)
 Strand = Plus / Minus

                                                                        
Query: 78   tgtacagacccaacagatcaaatggactcagttcaagcggaaaaacacacgcgggagtgg 137
            ||||||||||||||||||||||||||||||||||||||| || || ||| |||| || ||
Sbjct: 1593 tgtacagacccaacagatcaaatggactcagttcaagcgaaacaa-acatgcgg-agcgg 1536

                                                                        
Query: 138  ttctacaaactgtgaggat----tttgtacaggcagtgccccgacggaaccacaggatca 193
            |||||||||||||||||||    ||||||||| |||||||||||||||||||||||||||
Sbjct: 1535 ttctacaaactgtgaggatggattttgtacagacagtgccccgacggaaccacaggatca 1476

                                                                        
Query: 194  acaagaatggacggccaacggtctcgccgctcgccgatttattttcttttccccggaaga 253
            ||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||
Sbjct: 1475 acaagaatggacggccaacggtc-cgccgc-cgccgatttattttcttttcgccggaaga 1418

                                                                        
Query: 254  agaattcgtccttttttcaggtccttcataccttcagcgccagcttcttggcagcgaggg 313
            |   |||||  | |||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1417 a---ttcgt--tgttttgaggtccttcataccttcagcgccagcttcttggcggcgaggg 1363

                                                                        
Query: 314  cctccgcctcgagggtcggctcccacaggatcgtggtctcggccagcagcgccgtcacgg 373
            |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1362 cctccgcctcaagggtcggctcccacaggatcgtggtctcggccagcagcgctgtcacgg 1303

                           
Query: 374  tgtacgggtccatgt 388
            |||| ||||||||||
Sbjct: 1302 tgtatgggtccatgt 1288
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>gb|DQ124214.1| Triticum aestivum plastid glutamine synthetase isoform GS2c (GS2)
            mRNA, complete cds; nuclear gene for plastid product
          Length = 1689

 Score =  260 bits (131), Expect = 3e-66
 Identities = 157/164 (95%), Gaps = 5/164 (3%)
 Strand = Plus / Minus

                                                                        
Query: 225  cgccgatttattttcttttccccggaagaagaattcgtccttttttcaggtccttcatac 284
            ||||||||||||||||||||||||||||||   |||| ||||||  ||||||||||||||
Sbjct: 1472 cgccgatttattttcttttccccggaagaa---ttcggcctttt--caggtccttcatac 1418

                                                                        
Query: 285  cttcagcgccagcttcttggcagcgagggcctccgcctcgagggtcggctcccacaggat 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 cttcagcgccagcttcttggcagcgagggcctccgcctcgagggtcggctcccacaggat 1358

                                                        
Query: 345  cgtggtctcggccagcagcgccgtcacggtgtacgggtccatgt 388
            ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1357 cgtggtctcggccagcagcgccgtcacggtgtatgggtccatgt 1314



 Score =  248 bits (125), Expect = 1e-62
 Identities = 160/171 (93%), Gaps = 3/171 (1%)
 Strand = Plus / Minus

                                                                        
Query: 36   ttataataacgtagttctccaaatggactcaggtacagtgagtgtacagacccaacagat 95
            |||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct: 1647 ttataataacgtagttctccgaatggactcaggtacagggattgtacagacccaacagat 1588

                                                                        
Query: 96   caaatggactcagttcaagcggaaaaacacacgcgggagtggttctacaaactgtgagga 155
            ||||||||||||||||||||| |||||||  |   |||| ||||||||||||||||||||
Sbjct: 1587 caaatggactcagttcaagcgaaaaaacatgc---ggagcggttctacaaactgtgagga 1531

                                                               
Query: 156  ttttgtacaggcagtgccccgacggaaccacaggatcaacaagaatggacg 206
            |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1530 ttttgtacagacagtgccccgacggaaccacaggatcaacaagaatggacg 1480
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>emb|X53580.1|HVGLN2R Barley gln mRNA for glutamine synthetase 2 (EC 6.3.1.2)
          Length = 1600

 Score =  248 bits (125), Expect = 1e-62
 Identities = 125/125 (100%)
 Strand = Plus / Minus

                                                                        
Query: 264  cttttttcaggtccttcataccttcagcgccagcttcttggcagcgagggcctccgcctc 323
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1600 cttttttcaggtccttcataccttcagcgccagcttcttggcagcgagggcctccgcctc 1541

                                                                        
Query: 324  gagggtcggctcccacaggatcgtggtctcggccagcagcgccgtcacggtgtacgggtc 383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1540 gagggtcggctcccacaggatcgtggtctcggccagcagcgccgtcacggtgtacgggtc 1481

                 
Query: 384  catgt 388
            |||||
Sbjct: 1480 catgt 1476
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>emb|X65931.1|ZMGS2 Z.mays mRNA gs2 for glutamine synthatase
          Length = 1483

 Score =  127 bits (64), Expect = 3e-26
 Identities = 100/112 (89%)
 Strand = Plus / Minus

                                                                        
Query: 277  cttcataccttcagcgccagcttcttggcagcgagggcctccgcctcgagggtcggctcc 336
            ||||| ||||||||||||||||||||||| || || ||||||||||||||||  |||| |
Sbjct: 1321 cttcacaccttcagcgccagcttcttggcggcaagagcctccgcctcgagggatggctgc 1262

                                                                
Query: 337  cacaggatcgtggtctcggccagcagcgccgtcacggtgtacgggtccatgt 388
            || |||||||||||||||||||| ||| |||||||  |||||||||||||||
Sbjct: 1261 cagaggatcgtggtctcggccagtagccccgtcacaatgtacgggtccatgt 1210
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>gb|AY110796.1| Zea mays CL2183_1 mRNA sequence
          Length = 1541

 Score =  127 bits (64), Expect = 3e-26
 Identities = 100/112 (89%)
 Strand = Plus / Minus

                                                                        
Query: 277  cttcataccttcagcgccagcttcttggcagcgagggcctccgcctcgagggtcggctcc 336
            ||||| ||||||||||||||||||||||| || || ||||||||||||||||  |||| |
Sbjct: 1321 cttcacaccttcagcgccagcttcttggcggcaagagcctccgcctcgagggatggctgc 1262

                                                                
Query: 337  cacaggatcgtggtctcggccagcagcgccgtcacggtgtacgggtccatgt 388
            || |||||||||||||||||||| ||| |||||||  |||||||||||||||
Sbjct: 1261 cagaggatcgtggtctcggccagtagccccgtcacaatgtacgggtccatgt 1210
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>emb|X14246.1|OSSIGS31 Oryza sativa shoot GS2 mRNA for chloroplastic glutamine synthetase
            (EC 6.3.1.2) (clone lambda-GS31)
          Length = 1649

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 94/112 (83%)
 Strand = Plus / Minus

                                                                        
Query: 277  cttcataccttcagcgccagcttcttggcagcgagggcctccgcctcgagggtcggctcc 336
            |||||||||||||| |||| |||||| ||||| ||  ||||||| |||||||| ||||||
Sbjct: 1352 cttcataccttcagggccaacttcttagcagcaagaacctccgcttcgagggttggctcc 1293

                                                                
Query: 337  cacaggatcgtggtctcggccagcagcgccgtcacggtgtacgggtccatgt 388
            || || || ||||| || ||||  ||||| ||||||  ||||||||||||||
Sbjct: 1292 caaagaattgtggtttcagccaatagcgctgtcacgacgtacgggtccatgt 1241
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>emb|AL662953.3|OSJN00153 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011F23,
             complete sequence
          Length = 149353

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 94/112 (83%)
 Strand = Plus / Plus

                                                                         
Query: 277   cttcataccttcagcgccagcttcttggcagcgagggcctccgcctcgagggtcggctcc 336
             |||||||||||||| |||| |||||| ||||| ||  ||||||| |||||||| ||||||
Sbjct: 89588 cttcataccttcagggccaacttcttagcagcaagaacctccgcttcgagggttggctcc 89647

                                                                 
Query: 337   cacaggatcgtggtctcggccagcagcgccgtcacggtgtacgggtccatgt 388
             || || || ||||| || ||||  ||||| ||||||  ||||||||||||||
Sbjct: 89648 caaagaattgtggtttcagccaatagcgctgtcacgacgtacgggtccatgt 89699
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>emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0015K02,
            complete sequence
          Length = 153623

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 94/112 (83%)
 Strand = Plus / Plus

                                                                        
Query: 277  cttcataccttcagcgccagcttcttggcagcgagggcctccgcctcgagggtcggctcc 336
            |||||||||||||| |||| |||||| ||||| ||  ||||||| |||||||| ||||||
Sbjct: 8971 cttcataccttcagggccaacttcttagcagcaagaacctccgcttcgagggttggctcc 9030

                                                                
Query: 337  cacaggatcgtggtctcggccagcagcgccgtcacggtgtacgggtccatgt 388
            || || || ||||| || ||||  ||||| ||||||  ||||||||||||||
Sbjct: 9031 caaagaattgtggtttcagccaatagcgctgtcacgacgtacgggtccatgt 9082
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>gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence
          Length = 181577

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 94/112 (83%)
 Strand = Plus / Plus

                                                                         
Query: 277   cttcataccttcagcgccagcttcttggcagcgagggcctccgcctcgagggtcggctcc 336
             |||||||||||||| |||| |||||| ||||| ||  ||||||| |||||||| ||||||
Sbjct: 89688 cttcataccttcagggccaacttcttagcagcaagaacctccgcttcgagggttggctcc 89747

                                                                 
Query: 337   cacaggatcgtggtctcggccagcagcgccgtcacggtgtacgggtccatgt 388
             || || || ||||| || ||||  ||||| ||||||  ||||||||||||||
Sbjct: 89748 caaagaattgtggtttcagccaatagcgctgtcacgacgtacgggtccatgt 89799
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 94/112 (83%)
 Strand = Plus / Plus

                                                                            
Query: 277      cttcataccttcagcgccagcttcttggcagcgagggcctccgcctcgagggtcggctcc 336
                |||||||||||||| |||| |||||| ||||| ||  ||||||| |||||||| ||||||
Sbjct: 33658528 cttcataccttcagggccaacttcttagcagcaagaacctccgcttcgagggttggctcc 33658587

                                                                    
Query: 337      cacaggatcgtggtctcggccagcagcgccgtcacggtgtacgggtccatgt 388
                || || || ||||| || ||||  ||||| ||||||  ||||||||||||||
Sbjct: 33658588 caaagaattgtggtttcagccaatagcgctgtcacgacgtacgggtccatgt 33658639
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>dbj|AK099252.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156I04, full
            insert sequence
          Length = 1639

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 94/112 (83%)
 Strand = Plus / Minus

                                                                        
Query: 277  cttcataccttcagcgccagcttcttggcagcgagggcctccgcctcgagggtcggctcc 336
            |||||||||||||| |||| |||||| ||||| ||  ||||||| |||||||| ||||||
Sbjct: 1342 cttcataccttcagggccaacttcttagcagcaagaacctccgcttcgagggttggctcc 1283

                                                                
Query: 337  cacaggatcgtggtctcggccagcagcgccgtcacggtgtacgggtccatgt 388
            || || || ||||| || ||||  ||||| ||||||  ||||||||||||||
Sbjct: 1282 caaagaattgtggtttcagccaatagcgctgtcacgacgtacgggtccatgt 1231
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>dbj|AK065491.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022E13, full
            insert sequence
          Length = 1677

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 94/112 (83%)
 Strand = Plus / Minus

                                                                        
Query: 277  cttcataccttcagcgccagcttcttggcagcgagggcctccgcctcgagggtcggctcc 336
            |||||||||||||| |||| |||||| ||||| ||  ||||||| |||||||| ||||||
Sbjct: 1370 cttcataccttcagggccaacttcttagcagcaagaacctccgcttcgagggttggctcc 1311

                                                                
Query: 337  cacaggatcgtggtctcggccagcagcgccgtcacggtgtacgggtccatgt 388
            || || || ||||| || ||||  ||||| ||||||  ||||||||||||||
Sbjct: 1310 caaagaattgtggtttcagccaatagcgctgtcacgacgtacgggtccatgt 1259
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>ref|XM_474199.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1287

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 92/110 (83%)
 Strand = Plus / Minus

                                                                        
Query: 279  tcataccttcagcgccagcttcttggcagcgagggcctccgcctcgagggtcggctccca 338
            |||||||||||| |||| |||||| ||||| ||  ||||||| |||||||| ||||||||
Sbjct: 1287 tcataccttcagggccaacttcttagcagcaagaacctccgcttcgagggttggctccca 1228

                                                              
Query: 339  caggatcgtggtctcggccagcagcgccgtcacggtgtacgggtccatgt 388
             || || ||||| || ||||  ||||| ||||||  ||||||||||||||
Sbjct: 1227 aagaattgtggtttcagccaatagcgctgtcacgacgtacgggtccatgt 1178
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>gb|AY835456.1| Saccharum officinarum chloroplast glutamine synthetase (GS2) mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 756

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 93/112 (83%)
 Strand = Plus / Minus

                                                                       
Query: 277 cttcataccttcagcgccagcttcttggcagcgagggcctccgcctcgagggtcggctcc 336
           |||||||||||||| |||||||||||||| || ||  ||||||| || ||||| |||| |
Sbjct: 500 cttcataccttcagtgccagcttcttggcggcaagaacctccgcttcaagggttggctgc 441

                                                               
Query: 337 cacaggatcgtggtctcggccagcagcgccgtcacggtgtacgggtccatgt 388
           || || || |||||||| ||||| ||| | |||||  |||| ||||||||||
Sbjct: 440 cagagaattgtggtctcagccagtagccctgtcacaatgtatgggtccatgt 389
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>gb|AF005223.1|AF005223 Helianthus annuus chloroplastic glutamine synthetase (ggs2) gene,
           ggs2a allele, mRNA, nuclear gene encoding chloroplast
           protein, partial cds
          Length = 718

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                       
Query: 286 ttcagcgccagcttcttggcagcgagggcctccgcctcgagggtcggctcccacaggatc 345
           |||| ||||| |||||  ||||||||||| || |||||||| || |||||||||||||| 
Sbjct: 518 ttcaacgccaacttctgagcagcgagggcttcagcctcgagtgtaggctcccacaggatg 459

                
Query: 346 gtggt 350
           |||||
Sbjct: 458 gtggt 454
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>dbj|AB161716.1| Phragmites australis GS2 mRNA for plastidic glutamine synthetase,
            complete cds, clone:YGS2-4
          Length = 1290

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                        
Query: 279  tcataccttcagcgccagcttcttggcagcgagggcctccgcctcgagggtcggctccca 338
            ||||||||||||||||| |||||| || || || |||||  | |||||||| ||||||||
Sbjct: 1290 tcataccttcagcgccaacttcttagcggcaagagcctctacttcgagggttggctccca 1231

                                      
Query: 339  caggatcgtggtctcggccagcagcg 364
             || || ||||| || ||||| ||||
Sbjct: 1230 aagaattgtggtttcagccagtagcg 1205
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>ref|XM_661336.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.40415)
            partial mRNA
          Length = 3129

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 160  gtacaggcagtgccccgacgg 180
            |||||||||||||||||||||
Sbjct: 1097 gtacaggcagtgccccgacgg 1117
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>gb|AC145323.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBb0018N12, complete sequence
          Length = 137127

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  ttttcttttccccggaagaa 254
            ||||||||||||||||||||
Sbjct: 3978 ttttcttttccccggaagaa 3997
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>gb|AC145321.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094P07,
              complete sequence
          Length = 162311

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 235    ttttcttttccccggaagaa 254
              ||||||||||||||||||||
Sbjct: 143724 ttttcttttccccggaagaa 143743
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>gb|AC147358.2| Xenopus tropicalis clone CH216-71J8, complete sequence
          Length = 170238

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   gttctacaaactgtgaggat 156
             ||||||||||||||||||||
Sbjct: 97736 gttctacaaactgtgaggat 97717
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>gb|AC147893.2| Xenopus tropicalis clone CH216-36J13, complete sequence
          Length = 159658

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    gttctacaaactgtgaggat 156
              ||||||||||||||||||||
Sbjct: 153251 gttctacaaactgtgaggat 153270
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 339     caggatcgtggtctcggcca 358
               ||||||||||||||||||||
Sbjct: 4562044 caggatcgtggtctcggcca 4562025
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>gb|AY065571.1|AY065570S2 Zea mays clone tac 907.49 3' Ac insertion site sequence
          Length = 386

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 284 ccttcagcgccagcttcttg 303
           ||||||||||||||||||||
Sbjct: 138 ccttcagcgccagcttcttg 157
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 339     caggatcgtggtctcggccagcag 362
               |||||||| |||||||||||||||
Sbjct: 4541257 caggatcgcggtctcggccagcag 4541280
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 235     ttttcttttccccggaagaa 254
               ||||||||||||||||||||
Sbjct: 5153735 ttttcttttccccggaagaa 5153716
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>gb|AY207394.1| Homo sapiens unknown protein mRNA, partial sequence
          Length = 429

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 230 atttattttcttttccccgg 249
           ||||||||||||||||||||
Sbjct: 399 atttattttcttttccccgg 418
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 356     ccagcagcgccgtcacggtg 375
               ||||||||||||||||||||
Sbjct: 3266855 ccagcagcgccgtcacggtg 3266874
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>dbj|AB110698.1| Oryzias latipes OlGC-R2 gene for guanylyl cyclase, exon 1-25, complete
             cds
          Length = 28608

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    caaatggactcaggtacagt 74
             ||||||||||||||||||||
Sbjct: 17187 caaatggactcaggtacagt 17168
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 235     ttttcttttccccggaagaa 254
               ||||||||||||||||||||
Sbjct: 5220152 ttttcttttccccggaagaa 5220133


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,265,869
Number of Sequences: 3902068
Number of extensions: 3265869
Number of successful extensions: 65094
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64824
Number of HSP's gapped (non-prelim): 261
length of query: 388
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 366
effective length of database: 17,147,199,772
effective search space: 6275875116552
effective search space used: 6275875116552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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