ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet40f03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL954348.8| Mouse DNA sequence from clone RP23-145N17 on chr... 42 0.043
2emb|CR847890.19| Zebrafish DNA sequence from clone DKEYP-70H9 in... 40 0.17
3emb|CT030247.6| Mouse DNA sequence from clone RP23-340G24 on chr... 40 0.17
4emb|AL928882.10| Mouse DNA sequence from clone RP23-281I20 on ch... 40 0.17
5emb|BX957222.1| Methanococcus maripaludis S2 complete genome; se... 38 0.67
6emb|BX248106.7| Zebrafish DNA sequence from clone CH211-123P13 i... 38 0.67
7gb|AC105009.13| Homo sapiens chromosome 8, clone RP11-188K5, com... 38 0.67
8gb|AC105235.7| Homo sapiens chromosome 8, clone CTD-2014D20, com... 38 0.67
9gb|AC114497.1| Homo sapiens chromosome 1 clone RP11-568G23, comp... 38 0.67
10emb|AL626767.15| Mouse DNA sequence from clone RP23-421C7 on chr... 38 0.67
11gb|AC118213.8| Mus musculus chromosome 1, clone RP24-529B23, com... 36 2.7
12gb|AC122927.3| Mus musculus chromosome UNKNOWN clone RP23-10F5, ... 36 2.7
13gb|AC124734.3| Mus musculus chromosome UNKNOWN clone RP23-306C20... 36 2.7
14gb|AC150881.4| Bos taurus BAC CH240-354J15 (Children's Hospital... 36 2.7
15gb|AC138654.4| Mus musculus BAC clone RP23-344O11 from chromosom... 36 2.7
16gb|DQ452068.1| Homo sapiens lipoprotein, Lp(a) (LPA) gene, compl... 36 2.7
17gb|AC125014.8| Mus musculus chromosome 16, clone RP24-149C21, co... 36 2.7
18gb|AC121290.6| Mus musculus chromosome 16, clone RP23-84N4, comp... 36 2.7
19gb|AC137525.3| Mus musculus BAC clone RP23-68H24 from chromosome... 36 2.7
20gb|AF069113.1| Acyrthosiphon pisum large subunit ribosomal RNA g... 36 2.7
21gb|AF069110.1| Macrosiphoniella ludovicianae large subunit ribos... 36 2.7
22gb|AC123936.4| Mus musculus BAC clone RP23-408L3 from chromosome... 36 2.7
23emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 36 2.7
24gb|AC105075.6| Mus musculus chromosome 1, clone RP23-366P11, com... 36 2.7
25emb|CR376761.19| Zebrafish DNA sequence from clone DKEY-6F24 in ... 36 2.7
26emb|AL732395.9| Human DNA sequence from clone RP11-77F5 on chrom... 36 2.7
27emb|AL592310.6| Human DNA sequence from clone RP4-566D2 on chrom... 36 2.7
28gb|AC132566.17| Mus musculus strain 129S6/SvEvTac clone rp22-554... 36 2.7
29emb|AL158066.12| Human DNA sequence from clone RP11-64P12 on chr... 36 2.7
30emb|AL138709.19| Human DNA sequence from clone RP11-460G11 on ch... 36 2.7
31emb|AL138762.20| Human DNA sequence from clone RP11-179B2 on chr... 36 2.7
32emb|AL137058.8| Human DNA sequence from clone RP11-78J21 on chro... 36 2.7
33emb|AL109933.25|HSDJ81D8 Human DNA sequence from clone RP1-81D8 ... 36 2.7
34emb|CR936417.6| Mouse DNA sequence from clone RP23-365N15 on chr... 36 2.7
35gb|AC131602.4| Rattus norvegicus 2 BAC CH230-33J10 (Children's H... 36 2.7
36emb|AL132978.1|ATF3A4 Arabidopsis thaliana DNA chromosome 3, BAC... 36 2.7
37emb|BX571897.12| Zebrafish DNA sequence from clone RP71-87M8 in ... 36 2.7
38gb|AC113389.2| Homo sapiens chromosome 5 clone RP11-35A11, compl... 36 2.7
39emb|BX470095.12| Zebrafish DNA sequence from clone DKEY-162H1 in... 36 2.7
40emb|AL929595.5| Zebrafish DNA sequence from clone CH211-59N3 in ... 36 2.7
41gb|AC126779.19| Medicago truncatula clone mth2-34m14, complete s... 36 2.7
42gb|AF275251.1| Pterocomma populifoliae 12S small subunit ribosom... 36 2.7
43gb|AF275250.1| Acyrthosiphon pisum 12S small subunit ribosomal R... 36 2.7
44gb|AF275248.1| Rhopalosiphum maidis 12S small subunit ribosomal ... 36 2.7
45gb|AC158233.2| Mus musculus BAC clone RP23-240E15 from chromosom... 36 2.7
46gb|AC134467.5| Mus musculus BAC clone RP24-91C4 from chromosome ... 36 2.7
47dbj|AK029093.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 36 2.7
48gb|AC009220.10|AC009220 Homo sapiens chromosome 7 clone RP11-365... 36 2.7
49dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 36 2.7
50gb|AC082649.4| Homo sapiens BAC clone RP11-99E17 from 4, complet... 36 2.7
51gb|L07899.1|HUMAPOLIAA Human apolipoprotein (a) gene, exon 1 36 2.7
52gb|AC010209.14| Homo sapiens 12 BAC RP11-427C3 (Roswell Park Can... 36 2.7
53gb|AC108057.3| Homo sapiens BAC clone RP11-374N13 from 2, comple... 36 2.7
54gb|AC018644.6|AC018644 Homo sapiens chromosome 7 clone RP11-383F... 36 2.7
55gb|AC139718.1| Homo sapiens BAC clone RP11-269F21 from 4, comple... 36 2.7
56gb|AC018767.3|AC018767 Homo sapiens chromosome 16 clone RP11-279... 36 2.7
57gb|AC144715.4| Mus musculus BAC clone RP23-295N8 from chromosome... 36 2.7
58gb|AC125036.5| Mus musculus BAC clone RP23-330P20 from chromosom... 36 2.7
59gb|AC134857.7| Mus musculus BAC clone RP23-336M11 from chromosom... 36 2.7
60gb|AC022314.5|AC022314 Genomic sequence for Arabidopsis thaliana... 36 2.7
61emb|BX465847.15| Mouse DNA sequence from clone RP23-102L14 on ch... 36 2.7
62emb|BX322590.10| Mouse DNA sequence from clone RP23-14B5 on chro... 36 2.7
63emb|BX571733.5| Mouse DNA sequence from clone RP23-246N12 on chr... 36 2.7
64emb|BX649234.1| Mouse DNA sequence from clone RP24-281J6 on chro... 36 2.7
65emb|CR925763.5| Zebrafish DNA sequence from clone CH211-267K22 i... 36 2.7
66emb|BX247899.17| Zebrafish DNA sequence from clone CH211-229B6 i... 36 2.7
67emb|AL935038.9| Zebrafish DNA sequence from clone CH211-187I23 i... 36 2.7
68emb|AL929005.7| Zebrafish DNA sequence from clone CH211-223P8, c... 36 2.7
69emb|BX640462.6| Zebrafish DNA sequence from clone CH211-153D8 in... 36 2.7
70emb|CT025758.11| Mouse DNA sequence from clone RP23-385I6 on chr... 36 2.7
71emb|BX323833.4| Pig DNA sequence from clone XX-554F3, complete s... 36 2.7
72gb|AC099584.8| Mus musculus chromosome 3, clone RP23-1A12, compl... 36 2.7
73emb|CT027595.5| Mouse DNA sequence from clone RP23-136N4 on chro... 36 2.7
74dbj|AP006096.1| Lotus japonicus genomic DNA, chromosome 4, clone... 36 2.7
75emb|X57625.1|MIMJND4 M. javanica mitochondrion ND4 (partial) and... 36 2.7
76emb|AL606916.4| Mouse DNA sequence from clone RP23-144L24 on chr... 36 2.7
77gb|AC125356.3| Mus musculus BAC clone RP23-186K8 from chromosome... 36 2.7 
>emb|AL954348.8| Mouse DNA sequence from clone RP23-145N17 on chromosome X, complete
             sequence
          Length = 116540

 Score = 42.1 bits (21), Expect = 0.043
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 4     ccccacacaataaattaataa 24
             |||||||||||||||||||||
Sbjct: 96329 ccccacacaataaattaataa 96309
to top
>emb|CR847890.19| Zebrafish DNA sequence from clone DKEYP-70H9 in linkage group 14,
             complete sequence
          Length = 217550

 Score = 40.1 bits (20), Expect = 0.17
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    acaataaattaataattcat 29
             ||||||||||||||||||||
Sbjct: 64381 acaataaattaataattcat 64400
to top
>emb|CT030247.6| Mouse DNA sequence from clone RP23-340G24 on chromosome 9, complete
              sequence
          Length = 218753

 Score = 40.1 bits (20), Expect = 0.17
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      cacacaataaattaataatt 26
              ||||||||||||||||||||
Sbjct: 208348 cacacaataaattaataatt 208329
to top
>emb|AL928882.10| Mouse DNA sequence from clone RP23-281I20 on chromosome 2, complete
             sequence
          Length = 147002

 Score = 40.1 bits (20), Expect = 0.17
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     acacaataaattaataattc 27
             ||||||||||||||||||||
Sbjct: 83233 acacaataaattaataattc 83214
to top
>emb|BX957222.1| Methanococcus maripaludis S2 complete genome; segment 4/5
          Length = 349607

 Score = 38.2 bits (19), Expect = 0.67
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 7     cacacaataaattaataat 25
             |||||||||||||||||||
Sbjct: 51552 cacacaataaattaataat 51570
to top
>emb|BX248106.7| Zebrafish DNA sequence from clone CH211-123P13 in linkage group 17,
             complete sequence
          Length = 140228

 Score = 38.2 bits (19), Expect = 0.67
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 12    aataaattaataattcatg 30
             |||||||||||||||||||
Sbjct: 19223 aataaattaataattcatg 19241
to top
>gb|AC105009.13| Homo sapiens chromosome 8, clone RP11-188K5, complete sequence
          Length = 175936

 Score = 38.2 bits (19), Expect = 0.67
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 11     caataaattaataattcat 29
              |||||||||||||||||||
Sbjct: 173418 caataaattaataattcat 173436
to top
>gb|AC105235.7| Homo sapiens chromosome 8, clone CTD-2014D20, complete sequence
          Length = 121660

 Score = 38.2 bits (19), Expect = 0.67
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 11    caataaattaataattcat 29
             |||||||||||||||||||
Sbjct: 36359 caataaattaataattcat 36341
to top
>gb|AC114497.1| Homo sapiens chromosome 1 clone RP11-568G23, complete sequence
          Length = 127715

 Score = 38.2 bits (19), Expect = 0.67
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 12    aataaattaataattcatg 30
             |||||||||||||||||||
Sbjct: 97574 aataaattaataattcatg 97556
to top
>emb|AL626767.15| Mouse DNA sequence from clone RP23-421C7 on chromosome 4, complete
              sequence
          Length = 199694

 Score = 38.2 bits (19), Expect = 0.67
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 8      acacaataaattaataatt 26
              |||||||||||||||||||
Sbjct: 125008 acacaataaattaataatt 124990
to top
>gb|AC118213.8| Mus musculus chromosome 1, clone RP24-529B23, complete sequence
          Length = 133485

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 6     ccacacaataaattaataattc 27
             |||||| |||||||||||||||
Sbjct: 56804 ccacaccataaattaataattc 56825
to top
>gb|AC122927.3| Mus musculus chromosome UNKNOWN clone RP23-10F5, complete sequence
          Length = 206260

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 10     acaataaattaataattc 27
              ||||||||||||||||||
Sbjct: 125221 acaataaattaataattc 125238
to top
>gb|AC124734.3| Mus musculus chromosome UNKNOWN clone RP23-306C20, complete sequence
          Length = 173113

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 10    acaataaattaataattc 27
             ||||||||||||||||||
Sbjct: 36547 acaataaattaataattc 36530
to top
>gb|AC150881.4| Bos taurus  BAC CH240-354J15 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 174996

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 12    aataaattaataattcat 29
             ||||||||||||||||||
Sbjct: 28379 aataaattaataattcat 28362
to top
>gb|AC138654.4| Mus musculus BAC clone RP23-344O11 from chromosome 5, complete sequence
          Length = 198036

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 7      cacacaataaattaataa 24
              ||||||||||||||||||
Sbjct: 160678 cacacaataaattaataa 160695
to top
>gb|DQ452068.1| Homo sapiens lipoprotein, Lp(a) (LPA) gene, complete cds
          Length = 136345

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 7    cacacaataaattaataa 24
            ||||||||||||||||||
Sbjct: 5409 cacacaataaattaataa 5392
to top
>gb|AC125014.8| Mus musculus chromosome 16, clone RP24-149C21, complete sequence
          Length = 177471

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 10     acaataaattaataattc 27
              ||||||||||||||||||
Sbjct: 114132 acaataaattaataattc 114149



 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 10    acaataaattaataattc 27
             ||||||||||||||||||
Sbjct: 61069 acaataaattaataattc 61086
to top
>gb|AC121290.6| Mus musculus chromosome 16, clone RP23-84N4, complete sequence
          Length = 241184

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 10     acaataaattaataattc 27
              ||||||||||||||||||
Sbjct: 228895 acaataaattaataattc 228912
to top
>gb|AC137525.3| Mus musculus BAC clone RP23-68H24 from chromosome 3, complete sequence
          Length = 203159

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 10    acaataaattaataattc 27
             ||||||||||||||||||
Sbjct: 23677 acaataaattaataattc 23660
to top
>gb|AF069113.1| Acyrthosiphon pisum large subunit ribosomal RNA gene, partial
           sequence; tRNA-Val gene, complete sequence; and small
           subunit ribosomal RNA gene, partial sequence
          Length = 1117

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 8   acacaataaattaataat 25
           ||||||||||||||||||
Sbjct: 367 acacaataaattaataat 384
to top
>gb|AF069110.1| Macrosiphoniella ludovicianae large subunit ribosomal RNA gene,
           partial sequence; tRNA-Val gene, complete sequence; and
           small subunit ribosomal RNA gene, partial sequence
          Length = 1052

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 8   acacaataaattaataat 25
           ||||||||||||||||||
Sbjct: 304 acacaataaattaataat 321
to top
>gb|AC123936.4| Mus musculus BAC clone RP23-408L3 from chromosome 15, complete sequence
          Length = 221204

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 8     acacaataaattaataattcat 29
             |||||||| |||||||||||||
Sbjct: 63757 acacaatatattaataattcat 63736
to top
>emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16,
             complete sequence
          Length = 163738

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 12    aataaattaataattcat 29
             ||||||||||||||||||
Sbjct: 97547 aataaattaataattcat 97564
to top
>gb|AC105075.6| Mus musculus chromosome 1, clone RP23-366P11, complete sequence
          Length = 195511

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 8     acacaataaattaataat 25
             ||||||||||||||||||
Sbjct: 40764 acacaataaattaataat 40781
to top
>emb|CR376761.19| Zebrafish DNA sequence from clone DKEY-6F24 in linkage group 2, complete
              sequence
          Length = 231384

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 12     aataaattaataattcat 29
              ||||||||||||||||||
Sbjct: 208687 aataaattaataattcat 208670
to top
>emb|AL732395.9| Human DNA sequence from clone RP11-77F5 on chromosome 10 Contains the
             3' end of the gene for uncharacterized hematopoietic
             stem/progenitor cells (MDS026), complete sequence
          Length = 54050

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 3     gccccacacaataaattaataa 24
             |||||||||||||||| |||||
Sbjct: 36767 gccccacacaataaataaataa 36788
to top
>emb|AL592310.6| Human DNA sequence from clone RP4-566D2 on chromosome 1 Contains a
             novel pseudogene and the 3' end of a novel gene
             (MGC42493), complete sequence
          Length = 111140

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 12    aataaattaataattcat 29
             ||||||||||||||||||
Sbjct: 11884 aataaattaataattcat 11901
to top
>gb|AC132566.17| Mus musculus strain 129S6/SvEvTac clone rp22-554j24, complete sequence
          Length = 132342

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 10    acaataaattaataattc 27
             ||||||||||||||||||
Sbjct: 52616 acaataaattaataattc 52599
to top
>emb|AL158066.12| Human DNA sequence from clone RP11-64P12 on chromosome 13q14.2-21.2
             Contains part of a novel gene, a mitochondrial ribosomal
             protein S31 (MRPS31) pseudogene and two CpG islands,
             complete sequence
          Length = 138201

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 12    aataaattaataattcat 29
             ||||||||||||||||||
Sbjct: 90673 aataaattaataattcat 90690
to top
>emb|AL138709.19| Human DNA sequence from clone RP11-460G11 on chromosome 13 Contains
             part of a novel gene, complete sequence
          Length = 96874

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 7     cacacaataaattaataattca 28
             |||||||||||||||| |||||
Sbjct: 78038 cacacaataaattaattattca 78017
to top
>emb|AL138762.20| Human DNA sequence from clone RP11-179B2 on chromosome 10, complete
             sequence
          Length = 113297

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 8     acacaataaattaataat 25
             ||||||||||||||||||
Sbjct: 42063 acacaataaattaataat 42080
to top
>emb|AL137058.8| Human DNA sequence from clone RP11-78J21 on chromosome 13q32.2-33.3
             Contains 2 novel genes, a pseudogene similar to part of
             TPTE and PTEN homologous inositol lipid phosphatase
             (TPIP), a pseudogene similar to part of mitochondrial
             ribosomal protein S31 (MRPS31), the gene for a novel
             protein similar to heterogeneous nuclear ribonucleoprotein
             A1 (HNRPA1) and 3 CpG islands, complete sequence
          Length = 163390

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 12    aataaattaataattcat 29
             ||||||||||||||||||
Sbjct: 65546 aataaattaataattcat 65529
to top
>emb|AL109933.25|HSDJ81D8 Human DNA sequence from clone RP1-81D8 on chromosome 6q25.3-26 Contains
             the PLG gene for plasminogen, the 5' end of the LPA gene
             for lipoprotein (Lp(a)), a novel gene, a pseudogene
             similar to part of plasminogen and a CpG island, complete
             sequence
          Length = 163599

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 7     cacacaataaattaataa 24
             ||||||||||||||||||
Sbjct: 11815 cacacaataaattaataa 11832
to top
>emb|CR936417.6| Mouse DNA sequence from clone RP23-365N15 on chromosome X, complete
              sequence
          Length = 164661

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 10     acaataaattaataattc 27
              ||||||||||||||||||
Sbjct: 111890 acaataaattaataattc 111873
to top
>gb|AC131602.4| Rattus norvegicus 2 BAC CH230-33J10 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 216155

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 4     ccccacacaataaattaa 21
             ||||||||||||||||||
Sbjct: 68597 ccccacacaataaattaa 68580
to top
>emb|AL132978.1|ATF3A4 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4
          Length = 108158

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 12    aataaattaataattcat 29
             ||||||||||||||||||
Sbjct: 43697 aataaattaataattcat 43714
to top
>emb|BX571897.12| Zebrafish DNA sequence from clone RP71-87M8 in linkage group 6,
             complete sequence
          Length = 149415

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 12    aataaattaataattcat 29
             ||||||||||||||||||
Sbjct: 89363 aataaattaataattcat 89346
to top
>gb|AC113389.2| Homo sapiens chromosome 5 clone RP11-35A11, complete sequence
          Length = 170706

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 5     cccacacaataaattaataatt 26
             |||||| |||||||||||||||
Sbjct: 43456 cccacagaataaattaataatt 43477
to top
>emb|BX470095.12| Zebrafish DNA sequence from clone DKEY-162H1 in linkage group 24,
           complete sequence
          Length = 209513

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 11  caataaattaataattca 28
           ||||||||||||||||||
Sbjct: 601 caataaattaataattca 584
to top
>emb|AL929595.5| Zebrafish DNA sequence from clone CH211-59N3 in linkage group 18,
             complete sequence
          Length = 106248

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 9     cacaataaattaataatt 26
             ||||||||||||||||||
Sbjct: 53085 cacaataaattaataatt 53068
to top
>gb|AC126779.19| Medicago truncatula clone mth2-34m14, complete sequence
          Length = 128856

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 9      cacaataaattaataatt 26
              ||||||||||||||||||
Sbjct: 113046 cacaataaattaataatt 113029
to top
>gb|AF275251.1| Pterocomma populifoliae 12S small subunit ribosomal RNA gene,
           partial sequence; tRNA-Val gene, complete sequence; and
           16S large subunit ribosomal RNA gene, partial sequence;
           mitochondrial genes for mitochondrial products
          Length = 1635

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 8   acacaataaattaataat 25
           ||||||||||||||||||
Sbjct: 722 acacaataaattaataat 705
to top
>gb|AF275250.1| Acyrthosiphon pisum 12S small subunit ribosomal RNA gene, partial
           sequence; tRNA-Val gene, complete sequence; and 16S
           large subunit ribosomal RNA gene, partial sequence;
           mitochondrial genes for mitochondrial products
          Length = 1578

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 8   acacaataaattaataat 25
           ||||||||||||||||||
Sbjct: 674 acacaataaattaataat 657
to top
>gb|AF275248.1| Rhopalosiphum maidis 12S small subunit ribosomal RNA gene, partial
           sequence; tRNA-Val gene, complete sequence; and 16S
           large subunit ribosomal RNA gene, partial sequence;
           mitochondrial genes for mitochondrial products
          Length = 1575

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 8   acacaataaattaataat 25
           ||||||||||||||||||
Sbjct: 664 acacaataaattaataat 647
to top
>gb|AC158233.2| Mus musculus BAC clone RP23-240E15 from chromosome 3, complete sequence
          Length = 209923

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 10     acaataaattaataattc 27
              ||||||||||||||||||
Sbjct: 187345 acaataaattaataattc 187328
to top
>gb|AC134467.5| Mus musculus BAC clone RP24-91C4 from chromosome unknown, complete
              sequence
          Length = 191263

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 10     acaataaattaataattc 27
              ||||||||||||||||||
Sbjct: 169905 acaataaattaataattc 169922



 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 10    acaataaattaataattc 27
             ||||||||||||||||||
Sbjct: 34539 acaataaattaataattc 34556
to top
>dbj|AK029093.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
            library, clone:4732490P15 product:hypothetical protein,
            full insert sequence
          Length = 2974

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 7    cacacaataaattaataa 24
            ||||||||||||||||||
Sbjct: 2327 cacacaataaattaataa 2310
to top
>gb|AC009220.10|AC009220 Homo sapiens chromosome 7 clone RP11-365F18, complete sequence
          Length = 184520

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 7     cacacaataaattaataattca 28
             ||||||||||| ||||||||||
Sbjct: 41086 cacacaataaaataataattca 41065
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 12       aataaattaataattcat 29
                ||||||||||||||||||
Sbjct: 21284073 aataaattaataattcat 21284090
to top
>gb|AC082649.4| Homo sapiens BAC clone RP11-99E17 from 4, complete sequence
          Length = 173146

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 9     cacaataaattaataatt 26
             ||||||||||||||||||
Sbjct: 38802 cacaataaattaataatt 38785
to top
>gb|L07899.1|HUMAPOLIAA Human apolipoprotein (a) gene, exon 1
          Length = 4804

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 7    cacacaataaattaataa 24
            ||||||||||||||||||
Sbjct: 3812 cacacaataaattaataa 3795
to top
>gb|AC010209.14| Homo sapiens 12 BAC RP11-427C3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 191148

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 12     aataaattaataattcat 29
              ||||||||||||||||||
Sbjct: 138360 aataaattaataattcat 138343
to top
>gb|AC108057.3| Homo sapiens BAC clone RP11-374N13 from 2, complete sequence
          Length = 127242

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 12    aataaattaataattcat 29
             ||||||||||||||||||
Sbjct: 26484 aataaattaataattcat 26501
to top
>gb|AC018644.6|AC018644 Homo sapiens chromosome 7 clone RP11-383F6, complete sequence
          Length = 193643

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 7      cacacaataaattaataattca 28
              ||||||||||| ||||||||||
Sbjct: 143427 cacacaataaaataataattca 143406
to top
>gb|AC139718.1| Homo sapiens BAC clone RP11-269F21 from 4, complete sequence
          Length = 127342

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 15    aaattaataattcatgct 32
             ||||||||||||||||||
Sbjct: 81904 aaattaataattcatgct 81887
to top
>gb|AC018767.3|AC018767 Homo sapiens chromosome 16 clone RP11-279O17, complete sequence
          Length = 159857

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 15     aaattaataattcatgct 32
              ||||||||||||||||||
Sbjct: 115364 aaattaataattcatgct 115381
to top
>gb|AC144715.4| Mus musculus BAC clone RP23-295N8 from chromosome unknown, complete
             sequence
          Length = 208503

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 10    acaataaattaataattc 27
             ||||||||||||||||||
Sbjct: 18036 acaataaattaataattc 18019
to top
>gb|AC125036.5| Mus musculus BAC clone RP23-330P20 from chromosome unknown, complete
              sequence
          Length = 223530

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 10     acaataaattaataattc 27
              ||||||||||||||||||
Sbjct: 127954 acaataaattaataattc 127937
to top
>gb|AC134857.7| Mus musculus BAC clone RP23-336M11 from chromosome unknown, complete
              sequence
          Length = 200440

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 10     acaataaattaataattc 27
              ||||||||||||||||||
Sbjct: 154391 acaataaattaataattc 154408
to top
>gb|AC022314.5|AC022314 Genomic sequence for Arabidopsis thaliana BAC F9C16 from chromosome I,
             complete sequence
          Length = 122543

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 8     acacaataaattaataat 25
             ||||||||||||||||||
Sbjct: 63768 acacaataaattaataat 63785
to top
>emb|BX465847.15| Mouse DNA sequence from clone RP23-102L14 on chromosome X, complete
             sequence
          Length = 206399

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 10    acaataaattaataattc 27
             ||||||||||||||||||
Sbjct: 53448 acaataaattaataattc 53465
to top
>emb|BX322590.10| Mouse DNA sequence from clone RP23-14B5 on chromosome X, complete
              sequence
          Length = 223699

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 10     acaataaattaataattc 27
              ||||||||||||||||||
Sbjct: 217707 acaataaattaataattc 217724



 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 10     acaataaattaataattc 27
              ||||||||||||||||||
Sbjct: 201508 acaataaattaataattc 201491
to top
>emb|BX571733.5| Mouse DNA sequence from clone RP23-246N12 on chromosome X, complete
             sequence
          Length = 22498

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 10    acaataaattaataattc 27
             ||||||||||||||||||
Sbjct: 17388 acaataaattaataattc 17371
to top
>emb|BX649234.1| Mouse DNA sequence from clone RP24-281J6 on chromosome X, complete
             sequence
          Length = 95091

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 10    acaataaattaataattc 27
             ||||||||||||||||||
Sbjct: 32514 acaataaattaataattc 32497
to top
>emb|CR925763.5| Zebrafish DNA sequence from clone CH211-267K22 in linkage group 19,
             complete sequence
          Length = 109265

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 9     cacaataaattaataatt 26
             ||||||||||||||||||
Sbjct: 62111 cacaataaattaataatt 62128
to top
>emb|BX247899.17| Zebrafish DNA sequence from clone CH211-229B6 in linkage group 19,
              complete sequence
          Length = 150160

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 11     caataaattaataattca 28
              ||||||||||||||||||
Sbjct: 123105 caataaattaataattca 123122
to top
>emb|AL935038.9| Zebrafish DNA sequence from clone CH211-187I23 in linkage group 18,
             complete sequence
          Length = 139077

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 9     cacaataaattaataatt 26
             ||||||||||||||||||
Sbjct: 52942 cacaataaattaataatt 52959
to top
>emb|AL929005.7| Zebrafish DNA sequence from clone CH211-223P8, complete sequence
          Length = 166364

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 12    aataaattaataattcat 29
             ||||||||||||||||||
Sbjct: 99431 aataaattaataattcat 99448
to top
>emb|BX640462.6| Zebrafish DNA sequence from clone CH211-153D8 in linkage group 24,
              complete sequence
          Length = 173882

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 11     caataaattaataattca 28
              ||||||||||||||||||
Sbjct: 172483 caataaattaataattca 172466
to top
>emb|CT025758.11| Mouse DNA sequence from clone RP23-385I6 on chromosome X, complete
             sequence
          Length = 138459

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 10    acaataaattaataattc 27
             ||||||||||||||||||
Sbjct: 74592 acaataaattaataattc 74609
to top
>emb|BX323833.4| Pig DNA sequence from clone XX-554F3, complete sequence
          Length = 121483

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 3     gccccacacaataaattaataa 24
             |||||||||||||||| |||||
Sbjct: 44496 gccccacacaataaataaataa 44517
to top
>gb|AC099584.8| Mus musculus chromosome 3, clone RP23-1A12, complete sequence
          Length = 217366

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 7      cacacaataaattaataa 24
              ||||||||||||||||||
Sbjct: 134008 cacacaataaattaataa 133991
to top
>emb|CT027595.5| Mouse DNA sequence from clone RP23-136N4 on chromosome X, complete
              sequence
          Length = 217637

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 10     acaataaattaataattc 27
              ||||||||||||||||||
Sbjct: 136936 acaataaattaataattc 136919



 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 10   acaataaattaataattc 27
            ||||||||||||||||||
Sbjct: 1568 acaataaattaataattc 1551
to top
>dbj|AP006096.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT10G09, TM0173b,
             complete sequence
          Length = 66866

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 12    aataaattaataattcat 29
             ||||||||||||||||||
Sbjct: 50794 aataaattaataattcat 50811
to top
>emb|X57625.1|MIMJND4 M. javanica mitochondrion ND4 (partial) and putative tRNA-Asp genes
          Length = 2038

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 12   aataaattaataattcat 29
            ||||||||||||||||||
Sbjct: 1502 aataaattaataattcat 1485
to top
>emb|AL606916.4| Mouse DNA sequence from clone RP23-144L24 on chromosome 4, complete
             sequence
          Length = 190214

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 7     cacacaataaattaataa 24
             ||||||||||||||||||
Sbjct: 37492 cacacaataaattaataa 37475
to top
>gb|AC125356.3| Mus musculus BAC clone RP23-186K8 from chromosome unknown, complete
            sequence
          Length = 239433

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 10   acaataaattaataattc 27
            ||||||||||||||||||
Sbjct: 9129 acaataaattaataattc 9112


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 610,277
Number of Sequences: 3902068
Number of extensions: 610277
Number of successful extensions: 182583
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 182287
Number of HSP's gapped (non-prelim): 296
length of query: 32
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 12
effective length of database: 17,155,003,908
effective search space: 205860046896
effective search space used: 205860046896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
to top