ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet40f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL445932.12| Human DNA sequence from clone RP11-533L1 on chr... 40 3.7
2dbj|AP000478.6| Homo sapiens genomic DNA, chromosome 11 clone:CM... 40 3.7
3emb|AL805921.7| Mouse DNA sequence from clone RP23-293N9 on chro... 40 3.7

>emb|AL445932.12| Human DNA sequence from clone RP11-533L1 on chromosome 6 Contains the
             5' end of a novel gene, complete sequence
          Length = 163650

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 25    ctattttaacattaatttagcagt 48
             ||||||||||||||||| ||||||
Sbjct: 16208 ctattttaacattaattcagcagt 16185



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>dbj|AP000478.6| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-14E22, complete
              sequence
          Length = 121689

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 250    ccatcatgcctgggtttctt 269
              ||||||||||||||||||||
Sbjct: 103761 ccatcatgcctgggtttctt 103742



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>emb|AL805921.7| Mouse DNA sequence from clone RP23-293N9 on chromosome 4, complete
              sequence
          Length = 162090

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     attttaacattaatttagca 46
              ||||||||||||||||||||
Sbjct: 138324 attttaacattaatttagca 138305


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,624,811
Number of Sequences: 3902068
Number of extensions: 1624811
Number of successful extensions: 29520
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29517
Number of HSP's gapped (non-prelim): 3
length of query: 285
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 263
effective length of database: 17,147,199,772
effective search space: 4509713540036
effective search space used: 4509713540036
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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