ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet40e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL929414.5| Mouse DNA sequence from clone RP23-222A19 on chr... 40 2.0
2gb|AC102756.8| Mus musculus chromosome 3, clone RP24-167K1, comp... 38 7.8
3gb|AC154528.2| Mus musculus BAC clone RP23-460I18 from chromosom... 38 7.8
4gb|AC122409.4| Mus musculus BAC clone RP24-140P18 from chromosom... 38 7.8
5gb|AC005817.8| Mus musculus strain 129/Sv clone ct7-581i11 map 1... 38 7.8
6emb|AL161913.11| Human DNA sequence from clone RP11-64P11 on chr... 38 7.8
7gb|AC157815.9| Mus musculus chromosome 3, clone RP24-175G5, comp... 38 7.8
8gb|AC155228.11| Medicago truncatula clone mth2-139i19, complete ... 38 7.8
9gb|AC107976.4| Homo sapiens chromosome 15, clone CTD-2576F9, com... 38 7.8
10gb|AC006082.22| Mus musculus strain 129/Sv ES cell line CJ7 chro... 38 7.8
11gb|AC147870.3| Monodelphis domestica clone VMRC6-297C9, complete... 38 7.8
12gb|AC132220.10| Homo sapiens chromosome 15, clone RP11-1142D4, c... 38 7.8
13gb|AC079043.27| Mus musculus strain C57BL/6J chromosome 16 clone... 38 7.8
14gb|AC118542.20| Mus musculus strain C57BL/6J chromosome 16 clone... 38 7.8
15emb|AL935270.6| Mouse DNA sequence from clone RP23-391A14 on chr... 38 7.8
16gb|AC087064.27| Mus musculus strain C57BL/6J chromosome 16 clone... 38 7.8
17gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold 38 7.8

>emb|AL929414.5| Mouse DNA sequence from clone RP23-222A19 on chromosome 11, complete
             sequence
          Length = 153928

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    atgtaaaactacttgagatt 110
             ||||||||||||||||||||
Sbjct: 39300 atgtaaaactacttgagatt 39281



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>gb|AC102756.8| Mus musculus chromosome 3, clone RP24-167K1, complete sequence
          Length = 175712

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 2     tgaattgtatgcatgcttg 20
             |||||||||||||||||||
Sbjct: 54335 tgaattgtatgcatgcttg 54317



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>gb|AC154528.2| Mus musculus BAC clone RP23-460I18 from chromosome 14, complete sequence
          Length = 207430

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 134    ctccccacagctttctgggtcag 156
              ||||||| |||||||||||||||
Sbjct: 144596 ctccccatagctttctgggtcag 144574



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>gb|AC122409.4| Mus musculus BAC clone RP24-140P18 from chromosome 8, complete sequence
          Length = 178068

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 92     tgtaaaactacttgagatt 110
              |||||||||||||||||||
Sbjct: 132342 tgtaaaactacttgagatt 132324



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>gb|AC005817.8| Mus musculus strain 129/Sv clone ct7-581i11 map 16, complete sequence
          Length = 188708

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 134    ctccccacagctttctggg 152
              |||||||||||||||||||
Sbjct: 168737 ctccccacagctttctggg 168755



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>emb|AL161913.11| Human DNA sequence from clone RP11-64P11 on chromosome 9, complete
             sequence
          Length = 137897

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 12    gcatgcttggattcatcca 30
             |||||||||||||||||||
Sbjct: 44243 gcatgcttggattcatcca 44261



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>gb|AC157815.9| Mus musculus chromosome 3, clone RP24-175G5, complete sequence
          Length = 170361

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     tgaattgtatgcatgcttg 20
             |||||||||||||||||||
Sbjct: 15535 tgaattgtatgcatgcttg 15553



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>gb|AC155228.11| Medicago truncatula clone mth2-139i19, complete sequence
          Length = 112322

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 9    tatgcatgcttggattcat 27
            |||||||||||||||||||
Sbjct: 6182 tatgcatgcttggattcat 6164



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>gb|AC107976.4| Homo sapiens chromosome 15, clone CTD-2576F9, complete sequence
          Length = 131548

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 139   cacagctttctgggtcagtgaaa 161
             |||||||||||||| ||||||||
Sbjct: 79713 cacagctttctggggcagtgaaa 79735



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>gb|AC006082.22| Mus musculus strain 129/Sv ES cell line CJ7 chromosome 16 clone
              ct7-342a4, complete sequence
          Length = 154201

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 134    ctccccacagctttctggg 152
              |||||||||||||||||||
Sbjct: 153898 ctccccacagctttctggg 153880



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>gb|AC147870.3| Monodelphis domestica clone VMRC6-297C9, complete sequence
          Length = 130886

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 91    atgtaaaactacttgagat 109
             |||||||||||||||||||
Sbjct: 93857 atgtaaaactacttgagat 93839



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>gb|AC132220.10| Homo sapiens chromosome 15, clone RP11-1142D4, complete sequence
          Length = 162101

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 139   cacagctttctgggtcagtgaaa 161
             |||||||||||||| ||||||||
Sbjct: 51840 cacagctttctggggcagtgaaa 51818



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>gb|AC079043.27| Mus musculus strain C57BL/6J chromosome 16 clone rp23-397e16, complete
              sequence
          Length = 214471

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 134    ctccccacagctttctggg 152
              |||||||||||||||||||
Sbjct: 168771 ctccccacagctttctggg 168789



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>gb|AC118542.20| Mus musculus strain C57BL/6J chromosome 16 clone rp23-117j21, complete
              sequence
          Length = 215057

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 134    ctccccacagctttctggg 152
              |||||||||||||||||||
Sbjct: 156349 ctccccacagctttctggg 156331



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>emb|AL935270.6| Mouse DNA sequence from clone RP23-391A14 on chromosome 2, complete
             sequence
          Length = 127274

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 135   tccccacagctttctgggt 153
             |||||||||||||||||||
Sbjct: 48662 tccccacagctttctgggt 48644



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>gb|AC087064.27| Mus musculus strain C57BL/6J chromosome 16 clone rp23-428i4, complete
             sequence
          Length = 211848

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 134   ctccccacagctttctggg 152
             |||||||||||||||||||
Sbjct: 66004 ctccccacagctttctggg 65986



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>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold
          Length = 1833844

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 91      atgtaaaactacttgagat 109
               |||||||||||||||||||
Sbjct: 1341535 atgtaaaactacttgagat 1341517


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 720,570
Number of Sequences: 3902068
Number of extensions: 720570
Number of successful extensions: 42909
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42880
Number of HSP's gapped (non-prelim): 29
length of query: 162
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 140
effective length of database: 17,147,199,772
effective search space: 2400607968080
effective search space used: 2400607968080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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