ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet40d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY105945.1| Zea mays PCO115682 mRNA sequence 74 3e-10
2gb|L37070.1|WHTHSP169L Triticum aestivum clone 17LC3 heat shock ... 70 5e-09
3ref|XM_474092.1| Oryza sativa (japonica cultivar-group), predic... 62 1e-06
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
5dbj|AK105903.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
6dbj|AK105778.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
7dbj|AK104623.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
8dbj|AK071989.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
9dbj|AK061322.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
10emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 62 1e-06
11emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4,... 62 1e-06
12gb|AC154039.17| Mus musculus 10 BAC RP23-282M20 (Roswell Park Ca... 44 0.30
13gb|AC160060.20| Mus musculus 10 BAC RP23-360L4 (Roswell Park Can... 44 0.30
14gb|DQ393975.1| Cydia pomonella clone Cp4.161 microsatellite sequ... 42 1.2
15ref|XM_636462.1| Dictyostelium discoideum aldehyde dehydrogenase... 40 4.6
16ref|NM_194617.1| Oryza sativa (japonica cultivar-group) putative... 40 4.6
17ref|XM_467171.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.6
18ref|NM_197679.1| Oryza sativa (japonica cultivar-group) putative... 40 4.6
19ref|XM_473863.1| Oryza sativa (japonica cultivar-group), predic... 40 4.6
20ref|XM_473862.1| Oryza sativa (japonica cultivar-group), predic... 40 4.6
21ref|XM_473581.1| Oryza sativa (japonica cultivar-group), predic... 40 4.6
22gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.6
23emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4,... 40 4.6
24emb|AJ536588.1|SCI536588 Streptomyces cinnamoneus cinnamycin bio... 40 4.6
25emb|AL807799.5| Zebrafish DNA sequence from clone CH211-257P7 in... 40 4.6
26emb|AL929566.30| Zebrafish DNA sequence from clone CH211-159C13 ... 40 4.6
27gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 geno... 40 4.6
28gb|AC079037.3| Oryza sativa chromosome 10 clone OSJNBa0023I19, c... 40 4.6
29emb|BX548249.13| Zebrafish DNA sequence from clone CH211-93A2 in... 40 4.6
30gb|AC154028.7| Mus musculus 10 BAC RP23-246J13 (Roswell Park Can... 40 4.6
31gb|AC158598.7| Mus musculus 10 BAC RP24-286B23 (Roswell Park Can... 40 4.6
32dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
33dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
34gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.6
35emb|AL840636.10| Zebrafish DNA sequence from clone CH211-262K7 i... 40 4.6
36emb|BX842600.1| Neurospora crassa DNA linkage group II BAC clone... 40 4.6
37dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
38dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
39dbj|AP004883.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
40dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
41emb|AL929281.7| Zebrafish DNA sequence from clone CH211-237I22, ... 40 4.6
42dbj|AK121041.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.6
43dbj|AK069178.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.6
44dbj|AK062781.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.6
45dbj|AK062911.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.6
46dbj|AK061150.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.6
47dbj|AK058218.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.6
48gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 4.6
49dbj|AP002008.5| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 4.6
50gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.6
51emb|AL606640.4|OSJN00071 Oryza sativa genomic DNA, chromosome 4,... 40 4.6 
>gb|AY105945.1| Zea mays PCO115682 mRNA sequence
          Length = 947

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 81/95 (85%), Gaps = 3/95 (3%)
 Strand = Plus / Minus

                                                                       
Query: 253 ggcggcacggcgcagccgcagtcgttgacgagcagctggagggcgaggggcacgtacagg 312
           ||||| ||||||||||||||||   ||||||||| || ||| |||| ||||||||| | |
Sbjct: 631 ggcgggacggcgcagccgcagt---tgacgagcacctcgagcgcgatgggcacgtagacg 575

                                              
Query: 313 gcgaggttgagcaccttggccttgatggcgatgca 347
           | || || |||||||||||||||||||||| ||||
Sbjct: 574 gagatgtcgagcaccttggccttgatggcggtgca 540
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>gb|L37070.1|WHTHSP169L Triticum aestivum clone 17LC3 heat shock protein 16.9
           (hsp16.9-17LC3) mRNA, partial cds
          Length = 440

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 64/74 (86%), Gaps = 6/74 (8%)
 Strand = Plus / Plus

                                                                       
Query: 104 gtagcactaaatgaacaaaccggaagcgagtggcttcatcgac------acaaccttgat 157
           |||| ||||||||||||||| |||||||| |||||||||||||      |||||||||||
Sbjct: 294 gtagtactaaatgaacaaacaggaagcgactggcttcatcgaccgaacaacaaccttgat 353

                         
Query: 158 ttcaaactcgtggc 171
           |||||||| |||||
Sbjct: 354 ttcaaacttgtggc 367



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 219 ggacggacggacggatcaggcgcaggtgtatcccggcggcacgg 262
           |||||||||| ||||||||||||||||||| ||||| |||||||
Sbjct: 390 ggacggacgggcggatcaggcgcaggtgtagcccgggggcacgg 433
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>ref|XM_474092.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 783

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 93/113 (82%), Gaps = 3/113 (2%)
 Strand = Plus / Minus

                                                                       
Query: 236 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 295
           ||||||||||||| || ||||| ||| ||||||||||||   ||||||| |||| ||| |
Sbjct: 781 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 725

                                                                
Query: 296 cgaggggcacgtacagggcgaggttgagcaccttggccttgatggcgatgcag 348
           ||| ||| | ||| | |  || || |||||||||||||||||||||| |||||
Sbjct: 724 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgcag 672
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 93/113 (82%), Gaps = 3/113 (2%)
 Strand = Plus / Plus

                                                                            
Query: 236      aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 295
                ||||||||||||| || ||||| ||| ||||||||||||   ||||||| |||| ||| |
Sbjct: 32827138 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 32827194

                                                                     
Query: 296      cgaggggcacgtacagggcgaggttgagcaccttggccttgatggcgatgcag 348
                ||| ||| | ||| | |  || || |||||||||||||||||||||| |||||
Sbjct: 32827195 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgcag 32827247



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 321      gagcaccttggccttgatggcgatgcag 348
                |||| ||||||||||||||||| |||||
Sbjct: 31096025 gagcgccttggccttgatggcggtgcag 31095998



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 321      gagcaccttggccttgatggcgatgcag 348
                |||| ||||||||||||||||| |||||
Sbjct: 31085606 gagcgccttggccttgatggcggtgcag 31085579



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 279      gacgagcagctggagggcga 298
                ||||||||||||||||||||
Sbjct: 28874424 gacgagcagctggagggcga 28874405
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>dbj|AK105903.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F11, full
           insert sequence
          Length = 1255

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 93/113 (82%), Gaps = 3/113 (2%)
 Strand = Plus / Minus

                                                                       
Query: 236 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 295
           ||||||||||||| || ||||| ||| ||||||||||||   ||||||| |||| ||| |
Sbjct: 931 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 875

                                                                
Query: 296 cgaggggcacgtacagggcgaggttgagcaccttggccttgatggcgatgcag 348
           ||| ||| | ||| | |  || || |||||||||||||||||||||| |||||
Sbjct: 874 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgcag 822
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>dbj|AK105778.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-F10, full
           insert sequence
          Length = 1242

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 93/113 (82%), Gaps = 3/113 (2%)
 Strand = Plus / Minus

                                                                       
Query: 236 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 295
           ||||||||||||| || ||||| ||| ||||||||||||   ||||||| |||| ||| |
Sbjct: 931 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 875

                                                                
Query: 296 cgaggggcacgtacagggcgaggttgagcaccttggccttgatggcgatgcag 348
           ||| ||| | ||| | |  || || |||||||||||||||||||||| |||||
Sbjct: 874 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgcag 822
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>dbj|AK104623.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-H11, full
           insert sequence
          Length = 1251

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 93/113 (82%), Gaps = 3/113 (2%)
 Strand = Plus / Minus

                                                                       
Query: 236 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 295
           ||||||||||||| || ||||| ||| ||||||||||||   ||||||| |||| ||| |
Sbjct: 927 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 871

                                                                
Query: 296 cgaggggcacgtacagggcgaggttgagcaccttggccttgatggcgatgcag 348
           ||| ||| | ||| | |  || || |||||||||||||||||||||| |||||
Sbjct: 870 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgcag 818
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>dbj|AK071989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094H13, full
           insert sequence
          Length = 1272

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 93/113 (82%), Gaps = 3/113 (2%)
 Strand = Plus / Minus

                                                                       
Query: 236 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 295
           ||||||||||||| || ||||| ||| ||||||||||||   ||||||| |||| ||| |
Sbjct: 935 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 879

                                                                
Query: 296 cgaggggcacgtacagggcgaggttgagcaccttggccttgatggcgatgcag 348
           ||| ||| | ||| | |  || || |||||||||||||||||||||| |||||
Sbjct: 878 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgcag 826
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>dbj|AK061322.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-F03, full
           insert sequence
          Length = 1257

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 93/113 (82%), Gaps = 3/113 (2%)
 Strand = Plus / Minus

                                                                       
Query: 236 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 295
           ||||||||||||| || ||||| ||| ||||||||||||   ||||||| |||| ||| |
Sbjct: 933 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 877

                                                                
Query: 296 cgaggggcacgtacagggcgaggttgagcaccttggccttgatggcgatgcag 348
           ||| ||| | ||| | |  || || |||||||||||||||||||||| |||||
Sbjct: 876 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgcag 824
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>emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0413E07, complete
             sequence
          Length = 76546

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 93/113 (82%), Gaps = 3/113 (2%)
 Strand = Plus / Plus

                                                                         
Query: 236   aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 295
             ||||||||||||| || ||||| ||| ||||||||||||   ||||||| |||| ||| |
Sbjct: 22373 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 22429

                                                                  
Query: 296   cgaggggcacgtacagggcgaggttgagcaccttggccttgatggcgatgcag 348
             ||| ||| | ||| | |  || || |||||||||||||||||||||| |||||
Sbjct: 22430 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgcag 22482
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>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05,
             complete sequence
          Length = 142556

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 93/113 (82%), Gaps = 3/113 (2%)
 Strand = Plus / Plus

                                                                         
Query: 236   aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 295
             ||||||||||||| || ||||| ||| ||||||||||||   ||||||| |||| ||| |
Sbjct: 89424 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 89480

                                                                  
Query: 296   cgaggggcacgtacagggcgaggttgagcaccttggccttgatggcgatgcag 348
             ||| ||| | ||| | |  || || |||||||||||||||||||||| |||||
Sbjct: 89481 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgcag 89533
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>gb|AC154039.17| Mus musculus 10 BAC RP23-282M20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 210923

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 217    acggacggacggacggatcagg 238
              ||||||||||||||||||||||
Sbjct: 171016 acggacggacggacggatcagg 170995
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>gb|AC160060.20| Mus musculus 10 BAC RP23-360L4 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 229681

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 217   acggacggacggacggatcagg 238
             ||||||||||||||||||||||
Sbjct: 70676 acggacggacggacggatcagg 70655
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>gb|DQ393975.1| Cydia pomonella clone Cp4.161 microsatellite sequence
          Length = 422

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 217 acggacggacggacggatcag 237
           |||||||||||||||||||||
Sbjct: 113 acggacggacggacggatcag 93
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>ref|XM_636462.1| Dictyostelium discoideum aldehyde dehydrogenase (DDB0231482),
           partial mRNA
          Length = 1770

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 40  acaaatcttacaagatttca 59
           ||||||||||||||||||||
Sbjct: 339 acaaatcttacaagatttca 358
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>ref|NM_194617.1| Oryza sativa (japonica cultivar-group) putative G-protein
           (OSJNBa0023I19.15), mRNA
          Length = 1752

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 251 ccggcggcacggcgcagccg 270
           ||||||||||||||||||||
Sbjct: 256 ccggcggcacggcgcagccg 237
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>ref|XM_467171.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 757

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 321 gagcaccttggccttgatggcgatgcag 348
           |||||| ||||||||||||||| |||||
Sbjct: 383 gagcacgttggccttgatggcggtgcag 356
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>ref|NM_197679.1| Oryza sativa (japonica cultivar-group) putative lipid transfer
           protein (OSJNBa0015J15.8), mRNA
          Length = 402

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 321 gagcaccttggccttgatggcgatgcag 348
           |||||| ||||||||||||||| |||||
Sbjct: 315 gagcacgttggccttgatggcggtgcag 288
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>ref|XM_473863.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 465

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 321 gagcaccttggccttgatggcgatgcag 348
           |||| ||||||||||||||||| |||||
Sbjct: 375 gagcgccttggccttgatggcggtgcag 348
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>ref|XM_473862.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 609

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 321 gagcaccttggccttgatggcgatgcag 348
           |||| ||||||||||||||||| |||||
Sbjct: 501 gagcgccttggccttgatggcggtgcag 474
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>ref|XM_473581.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1416

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 279 gacgagcagctggagggcga 298
           ||||||||||||||||||||
Sbjct: 93  gacgagcagctggagggcga 74
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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 251     ccggcggcacggcgcagccg 270
               ||||||||||||||||||||
Sbjct: 1104096 ccggcggcacggcgcagccg 1104077
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>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
             complete sequence
          Length = 160484

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 321   gagcaccttggccttgatggcgatgcag 348
             |||| ||||||||||||||||| |||||
Sbjct: 78106 gagcgccttggccttgatggcggtgcag 78079



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 321   gagcaccttggccttgatggcgatgcag 348
             |||| ||||||||||||||||| |||||
Sbjct: 67687 gagcgccttggccttgatggcggtgcag 67660
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>emb|AJ536588.1|SCI536588 Streptomyces cinnamoneus cinnamycin biosynthetic cluster
          Length = 17083

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 309   cagggcgaggttgagcaccttggc 332
             ||||||||||||| ||||||||||
Sbjct: 15740 cagggcgaggttgcgcaccttggc 15717
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>emb|AL807799.5| Zebrafish DNA sequence from clone CH211-257P7 in linkage group 2,
              complete sequence
          Length = 175342

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 214    ggaacggacggacggacgga 233
              ||||||||||||||||||||
Sbjct: 123816 ggaacggacggacggacgga 123797
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>emb|AL929566.30| Zebrafish DNA sequence from clone CH211-159C13 in linkage group 8,
             complete sequence
          Length = 137166

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   gaacggacggacggacggat 234
             ||||||||||||||||||||
Sbjct: 63584 gaacggacggacggacggat 63603
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>gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 genomic sequence, complete
             sequence
          Length = 144798

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 321   gagcaccttggccttgatggcgatgcag 348
             |||||| ||||||||||||||| |||||
Sbjct: 34194 gagcacgttggccttgatggcggtgcag 34167
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>gb|AC079037.3| Oryza sativa chromosome 10 clone OSJNBa0023I19, complete sequence
          Length = 157450

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 251    ccggcggcacggcgcagccg 270
              ||||||||||||||||||||
Sbjct: 101549 ccggcggcacggcgcagccg 101530
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>emb|BX548249.13| Zebrafish DNA sequence from clone CH211-93A2 in linkage group 21,
             complete sequence
          Length = 153142

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   ggaacggacggacggacgga 233
             ||||||||||||||||||||
Sbjct: 66734 ggaacggacggacggacgga 66715
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>gb|AC154028.7| Mus musculus 10 BAC RP23-246J13 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 206191

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 17    caccttccatagccactggatatacaaa 44
             ||||||||||||||||||  ||||||||
Sbjct: 41677 caccttccatagccactgtgtatacaaa 41650
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>gb|AC158598.7| Mus musculus 10 BAC RP24-286B23 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 162273

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 17     caccttccatagccactggatatacaaa 44
              ||||||||||||||||||  ||||||||
Sbjct: 153678 caccttccatagccactgtgtatacaaa 153651
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 321      gagcaccttggccttgatggcgatgcag 348
                |||||| ||||||||||||||| |||||
Sbjct: 21171512 gagcacgttggccttgatggcggtgcag 21171539



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 251     ccggcggcacggcgcagccg 270
               ||||||||||||||||||||
Sbjct: 1104096 ccggcggcacggcgcagccg 1104077
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 216      aacggacggacggacggatc 235
                ||||||||||||||||||||
Sbjct: 33695616 aacggacggacggacggatc 33695597



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 321      gagcaccttggccttgatggcgatgcag 348
                |||||| ||||||||||||||| |||||
Sbjct: 26833512 gagcacgttggccttgatggcggtgcag 26833485
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 287    gctggagggcgaggggcacg 306
              ||||||||||||||||||||
Sbjct: 781004 gctggagggcgaggggcacg 780985
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>emb|AL840636.10| Zebrafish DNA sequence from clone CH211-262K7 in linkage group 20,
              complete sequence
          Length = 174999

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 214    ggaacggacggacggacgga 233
              ||||||||||||||||||||
Sbjct: 123472 ggaacggacggacggacgga 123453
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>emb|BX842600.1| Neurospora crassa DNA linkage group II BAC clone B15P20
          Length = 74452

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   gaacggacggacggacggat 234
             ||||||||||||||||||||
Sbjct: 73734 gaacggacggacggacggat 73753
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>dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1001_D02
          Length = 129081

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 321   gagcaccttggccttgatggcgatgcag 348
             |||||| ||||||||||||||| |||||
Sbjct: 12055 gagcacgttggccttgatggcggtgcag 12028
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>dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1249_F12
          Length = 133205

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   aacggacggacggacggatc 235
             ||||||||||||||||||||
Sbjct: 64023 aacggacggacggacggatc 64004
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>dbj|AP004883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0516F12
          Length = 146364

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 321   gagcaccttggccttgatggcgatgcag 348
             |||||| ||||||||||||||| |||||
Sbjct: 99565 gagcacgttggccttgatggcggtgcag 99538
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>dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0700F06
          Length = 139277

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   aacggacggacggacggatc 235
             ||||||||||||||||||||
Sbjct: 26483 aacggacggacggacggatc 26464
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>emb|AL929281.7| Zebrafish DNA sequence from clone CH211-237I22, complete sequence
          Length = 148678

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 214    ggaacggacggacggacgga 233
              ||||||||||||||||||||
Sbjct: 124799 ggaacggacggacggacgga 124818
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>dbj|AK121041.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052A13, full
           insert sequence
          Length = 1774

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 279 gacgagcagctggagggcga 298
           ||||||||||||||||||||
Sbjct: 353 gacgagcagctggagggcga 334
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>dbj|AK069178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008D04, full
           insert sequence
          Length = 2067

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 279 gacgagcagctggagggcga 298
           ||||||||||||||||||||
Sbjct: 565 gacgagcagctggagggcga 546
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>dbj|AK062781.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-B03, full
           insert sequence
          Length = 713

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 321 gagcaccttggccttgatggcgatgcag 348
           |||| ||||||||||||||||| |||||
Sbjct: 235 gagcgccttggccttgatggcggtgcag 208
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>dbj|AK062911.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G07, full
           insert sequence
          Length = 757

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 321 gagcaccttggccttgatggcgatgcag 348
           |||||| ||||||||||||||| |||||
Sbjct: 402 gagcacgttggccttgatggcggtgcag 375
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>dbj|AK061150.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-E04, full
           insert sequence
          Length = 1634

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 279 gacgagcagctggagggcga 298
           ||||||||||||||||||||
Sbjct: 139 gacgagcagctggagggcga 120
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>dbj|AK058218.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F04, full
           insert sequence
          Length = 757

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 321 gagcaccttggccttgatggcgatgcag 348
           |||||| ||||||||||||||| |||||
Sbjct: 383 gagcacgttggccttgatggcggtgcag 356
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 275     cgttgacgagcagctggagggcga 298
               ||||||||||| ||||||||||||
Sbjct: 5613674 cgttgacgagcggctggagggcga 5613697
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>dbj|AP002008.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-794P6, complete
             sequences
          Length = 194973

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   gggcgaggggcacgtacagg 312
             ||||||||||||||||||||
Sbjct: 30682 gggcgaggggcacgtacagg 30663
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 321      gagcaccttggccttgatggcgatgcag 348
                |||||| ||||||||||||||| |||||
Sbjct: 21182776 gagcacgttggccttgatggcggtgcag 21182803



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 251     ccggcggcacggcgcagccg 270
               ||||||||||||||||||||
Sbjct: 1104093 ccggcggcacggcgcagccg 1104074
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>emb|AL606640.4|OSJN00071 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019K04,
             complete sequence
          Length = 154865

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   gacgagcagctggagggcga 298
             ||||||||||||||||||||
Sbjct: 86586 gacgagcagctggagggcga 86567


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,485,373
Number of Sequences: 3902068
Number of extensions: 2485373
Number of successful extensions: 62366
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61936
Number of HSP's gapped (non-prelim): 420
length of query: 348
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 326
effective length of database: 17,147,199,772
effective search space: 5589987125672
effective search space used: 5589987125672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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