| Clone Name | rbaet40c06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB063117.1| Hordeum vulgare HvAPX1 mRNA for peroxisome type ascorbate peroxidase, complete cds Length = 1089 Score = 486 bits (245), Expect = e-134 Identities = 271/282 (96%) Strand = Plus / Minus Query: 3 cctcaagaatgtatgaaatattttgagactactgttggttgttcatcactagagttctgt 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1039 cctcaagaatgtatgaaatattttgagactactgttggttgttcatcactagagttctgt 980 Query: 63 tatttgcacttggcacttannnnnnnagaataataacttgatccttactaaataagggaa 122 ||||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct: 979 tatttgcacttggcacttatttttttagaataataacttgatacttactaaataagggaa 920 Query: 123 tgtcatccaagaactcacgaaccccttacttgctccttttggaagcttcgtacaggtagc 182 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 919 tgtcatccaagaactcacgaaccccttacttgctcctcttggaagcttcgtacaggtagc 860 Query: 183 ccgcgataactacagctgcagcaactgctaccccgactgctctctgtgcaagtacaacag 242 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 859 ccgcgataactacagctgcagcaactgctaccccgactgcactctgtgcaagtacaacag 800 Query: 243 cagttgaaacatctgattttgtaaatgctgggccactgctcc 284 ||||||||||||||||||||||| |||||||||||||||||| Sbjct: 799 cagttgaaacatctgattttgtagatgctgggccactgctcc 758
>ref|XM_483666.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1158 Score = 123 bits (62), Expect = 3e-25 Identities = 119/138 (86%) Strand = Plus / Minus Query: 147 cttacttgctccttttggaagcttcgtacaggtagcccgcgataactacagctgcagcaa 206 ||||||||||| | || ||||| ||||| ||||||| | ||||||||||||||||||||| Sbjct: 983 cttacttgctcttcttagaagcctcgtataggtagctcacgataactacagctgcagcaa 924 Query: 207 ctgctaccccgactgctctctgtgcaagtacaacagcagttgaaacatctgattttgtaa 266 | ||||||||||| || |||||||| |||||| || ||||||||| ||| ||||| ||| Sbjct: 923 cagctaccccgacagcactctgtgcgagtacagcaccagttgaaagatcagatttcgtag 864 Query: 267 atgctgggccactgctcc 284 |||| ||||| ||||||| Sbjct: 863 atgcagggccgctgctcc 846 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 45 tcatcactagagttctgttatttg 68 ||||||||||| |||||||||||| Sbjct: 1053 tcatcactagaattctgttatttg 1030
>ref|XM_507324.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1479_B11.9 mRNA Length = 1229 Score = 123 bits (62), Expect = 3e-25 Identities = 119/138 (86%) Strand = Plus / Minus Query: 147 cttacttgctccttttggaagcttcgtacaggtagcccgcgataactacagctgcagcaa 206 ||||||||||| | || ||||| ||||| ||||||| | ||||||||||||||||||||| Sbjct: 994 cttacttgctcttcttagaagcctcgtataggtagctcacgataactacagctgcagcaa 935 Query: 207 ctgctaccccgactgctctctgtgcaagtacaacagcagttgaaacatctgattttgtaa 266 | ||||||||||| || |||||||| |||||| || ||||||||| ||| ||||| ||| Sbjct: 934 cagctaccccgacagcactctgtgcgagtacagcaccagttgaaagatcagatttcgtag 875 Query: 267 atgctgggccactgctcc 284 |||| ||||| ||||||| Sbjct: 874 atgcagggccgctgctcc 857 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 45 tcatcactagagttctgttatttg 68 ||||||||||| |||||||||||| Sbjct: 1064 tcatcactagaattctgttatttg 1041
>gb|AY459336.1| Oryza sativa (japonica cultivar-group) clone CL034244.2 R2R3-MYB gene region Length = 65993 Score = 123 bits (62), Expect = 3e-25 Identities = 119/138 (86%) Strand = Plus / Plus Query: 147 cttacttgctccttttggaagcttcgtacaggtagcccgcgataactacagctgcagcaa 206 ||||||||||| | || ||||| ||||| ||||||| | ||||||||||||||||||||| Sbjct: 53367 cttacttgctcttcttagaagcctcgtataggtagctcacgataactacagctgcagcaa 53426 Query: 207 ctgctaccccgactgctctctgtgcaagtacaacagcagttgaaacatctgattttgtaa 266 | ||||||||||| || |||||||| |||||| || ||||||||| ||| ||||| ||| Sbjct: 53427 cagctaccccgacagcactctgtgcgagtacagcaccagttgaaagatcagatttcgtag 53486 Query: 267 atgctgggccactgctcc 284 |||| ||||| ||||||| Sbjct: 53487 atgcagggccgctgctcc 53504 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 45 tcatcactagagttctgttatttg 68 ||||||||||| |||||||||||| Sbjct: 53297 tcatcactagaattctgttatttg 53320
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 123 bits (62), Expect = 3e-25 Identities = 119/138 (86%) Strand = Plus / Plus Query: 147 cttacttgctccttttggaagcttcgtacaggtagcccgcgataactacagctgcagcaa 206 ||||||||||| | || ||||| ||||| ||||||| | ||||||||||||||||||||| Sbjct: 27548327 cttacttgctcttcttagaagcctcgtataggtagctcacgataactacagctgcagcaa 27548386 Query: 207 ctgctaccccgactgctctctgtgcaagtacaacagcagttgaaacatctgattttgtaa 266 | ||||||||||| || |||||||| |||||| || ||||||||| ||| ||||| ||| Sbjct: 27548387 cagctaccccgacagcactctgtgcgagtacagcaccagttgaaagatcagatttcgtag 27548446 Query: 267 atgctgggccactgctcc 284 |||| ||||| ||||||| Sbjct: 27548447 atgcagggccgctgctcc 27548464 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 45 tcatcactagagttctgttatttg 68 ||||||||||| |||||||||||| Sbjct: 27548257 tcatcactagaattctgttatttg 27548280
>dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1479_B11 Length = 105702 Score = 123 bits (62), Expect = 3e-25 Identities = 119/138 (86%) Strand = Plus / Plus Query: 147 cttacttgctccttttggaagcttcgtacaggtagcccgcgataactacagctgcagcaa 206 ||||||||||| | || ||||| ||||| ||||||| | ||||||||||||||||||||| Sbjct: 30617 cttacttgctcttcttagaagcctcgtataggtagctcacgataactacagctgcagcaa 30676 Query: 207 ctgctaccccgactgctctctgtgcaagtacaacagcagttgaaacatctgattttgtaa 266 | ||||||||||| || |||||||| |||||| || ||||||||| ||| ||||| ||| Sbjct: 30677 cagctaccccgacagcactctgtgcgagtacagcaccagttgaaagatcagatttcgtag 30736 Query: 267 atgctgggccactgctcc 284 |||| ||||| ||||||| Sbjct: 30737 atgcagggccgctgctcc 30754 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 45 tcatcactagagttctgttatttg 68 ||||||||||| |||||||||||| Sbjct: 30547 tcatcactagaattctgttatttg 30570
>dbj|AK104490.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B09, full insert sequence Length = 1158 Score = 123 bits (62), Expect = 3e-25 Identities = 119/138 (86%) Strand = Plus / Minus Query: 147 cttacttgctccttttggaagcttcgtacaggtagcccgcgataactacagctgcagcaa 206 ||||||||||| | || ||||| ||||| ||||||| | ||||||||||||||||||||| Sbjct: 983 cttacttgctcttcttagaagcctcgtataggtagctcacgataactacagctgcagcaa 924 Query: 207 ctgctaccccgactgctctctgtgcaagtacaacagcagttgaaacatctgattttgtaa 266 | ||||||||||| || |||||||| |||||| || ||||||||| ||| ||||| ||| Sbjct: 923 cagctaccccgacagcactctgtgcgagtacagcaccagttgaaagatcagatttcgtag 864 Query: 267 atgctgggccactgctcc 284 |||| ||||| ||||||| Sbjct: 863 atgcagggccgctgctcc 846 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 45 tcatcactagagttctgttatttg 68 ||||||||||| |||||||||||| Sbjct: 1053 tcatcactagaattctgttatttg 1030
>dbj|AK070842.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074O14, full insert sequence Length = 1229 Score = 123 bits (62), Expect = 3e-25 Identities = 119/138 (86%) Strand = Plus / Minus Query: 147 cttacttgctccttttggaagcttcgtacaggtagcccgcgataactacagctgcagcaa 206 ||||||||||| | || ||||| ||||| ||||||| | ||||||||||||||||||||| Sbjct: 994 cttacttgctcttcttagaagcctcgtataggtagctcacgataactacagctgcagcaa 935 Query: 207 ctgctaccccgactgctctctgtgcaagtacaacagcagttgaaacatctgattttgtaa 266 | ||||||||||| || |||||||| |||||| || ||||||||| ||| ||||| ||| Sbjct: 934 cagctaccccgacagcactctgtgcgagtacagcaccagttgaaagatcagatttcgtag 875 Query: 267 atgctgggccactgctcc 284 |||| ||||| ||||||| Sbjct: 874 atgcagggccgctgctcc 857 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 45 tcatcactagagttctgttatttg 68 ||||||||||| |||||||||||| Sbjct: 1064 tcatcactagaattctgttatttg 1041
>gb|BT016732.1| Zea mays clone Contig565 mRNA sequence Length = 1248 Score = 83.8 bits (42), Expect = 3e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 161 ttggaagcttcgtacaggtagcccgcgataactacagctgcagcaactgctaccccgact 220 |||||||| ||||||| |||||| ||||||||||| |||||||||||||||||||| | Sbjct: 993 ttggaagcctcgtacaagtagccagcgataactacggctgcagcaactgctaccccaaag 934 Query: 221 gctctctgtgcaag 234 || ||||||||||| Sbjct: 933 gcactctgtgcaag 920
>gb|AY109419.1| Zea mays CL26634_1 mRNA sequence Length = 1373 Score = 83.8 bits (42), Expect = 3e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 161 ttggaagcttcgtacaggtagcccgcgataactacagctgcagcaactgctaccccgact 220 |||||||| ||||||| |||||| ||||||||||| |||||||||||||||||||| | Sbjct: 416 ttggaagcctcgtacaagtagccagcgataactacggctgcagcaactgctaccccaaag 475 Query: 221 gctctctgtgcaag 234 || ||||||||||| Sbjct: 476 gcactctgtgcaag 489
>gb|AY789051.1| Populus tomentosa ascorbate peroxidase mRNA, complete cds Length = 969 Score = 42.1 bits (21), Expect = 0.94 Identities = 39/45 (86%) Strand = Plus / Minus Query: 194 acagctgcagcaactgctaccccgactgctctctgtgcaagtaca 238 |||||||| ||||||||||| || ||||| || ||||| |||||| Sbjct: 831 acagctgccgcaactgctactccaactgcactttgtgctagtaca 787
>ref|XM_456196.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F25036g predicted mRNA Length = 1170 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 gcagttgaaacatctgatttt 262 ||||||||||||||||||||| Sbjct: 369 gcagttgaaacatctgatttt 389
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 gcagttgaaacatctgatttt 262 ||||||||||||||||||||| Sbjct: 2329833 gcagttgaaacatctgatttt 2329853
>gb|AC109359.4| Homo sapiens BAC clone RP11-679M12 from 4, complete sequence Length = 134897 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 agttctgttatttgcacttgg 75 ||||||||||||||||||||| Sbjct: 53242 agttctgttatttgcacttgg 53262
>ref|XM_639988.1| Dictyostelium discoideum hypothetical protein (DDB0168011), partial mRNA Length = 4611 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 acaacagcagttgaaacatc 255 |||||||||||||||||||| Sbjct: 1870 acaacagcagttgaaacatc 1889
>ref|XM_639242.1| Dictyostelium discoideum hypothetical protein (DDB0217388), partial mRNA Length = 4611 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 acaacagcagttgaaacatc 255 |||||||||||||||||||| Sbjct: 1870 acaacagcagttgaaacatc 1889
>emb|AL035665.32|HS644L1 Human DNA sequence from clone RP4-644L1 on chromosome 20q12 Contains the MAFB gene for v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian), a novel gene and two CpG islands, complete sequence Length = 145593 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 atctgattttgtaaatgctg 272 |||||||||||||||||||| Sbjct: 115360 atctgattttgtaaatgctg 115341
>emb|Z99108.2|BSUB0005 Bacillus subtilis complete genome (section 5 of 21): from 813670 to 1011078 Length = 197409 Score = 40.1 bits (20), Expect = 3.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 184 cgcgataactacagctgcagcaactgct 211 ||||||| | |||||||||||||||||| Sbjct: 173030 cgcgataccgacagctgcagcaactgct 173003
>emb|X96983.1|BS75DGREG B.subtilis chromosomal DNA (region 75 degrees: cspB upstream of glpPFKD operon) Length = 21808 Score = 40.1 bits (20), Expect = 3.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 184 cgcgataactacagctgcagcaactgct 211 ||||||| | |||||||||||||||||| Sbjct: 8245 cgcgataccgacagctgcagcaactgct 8218
>emb|AJ235271.1|RPXX02 Rickettsia prowazekii strain Madrid E, complete genome; segment 2/4 Length = 312430 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 tatgaaatattttgagacta 33 |||||||||||||||||||| Sbjct: 113468 tatgaaatattttgagacta 113487
>emb|CR394542.5| Zebrafish DNA sequence from clone DKEY-91I10 in linkage group 9, complete sequence Length = 193811 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 ttgaaacatctgattttgtaaatg 269 ||||||||| |||||||||||||| Sbjct: 78094 ttgaaacatttgattttgtaaatg 78117
>gb|AY119006.1| Drosophila melanogaster LP03361 full insert cDNA Length = 1525 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 tgctctctgtgcaagtacaa 239 |||||||||||||||||||| Sbjct: 715 tgctctctgtgcaagtacaa 696
>gb|AC010695.5| Drosophila melanogaster 3L BAC RP98-20J4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 160650 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tgctctctgtgcaagtacaa 239 |||||||||||||||||||| Sbjct: 7053 tgctctctgtgcaagtacaa 7072
>gb|AC010574.5| Drosophila melanogaster 3L BAC RP98-7L7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 162402 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tgctctctgtgcaagtacaa 239 |||||||||||||||||||| Sbjct: 152988 tgctctctgtgcaagtacaa 153007
>ref|NM_079368.2| Drosophila melanogaster Ecdysone-induced gene 71Ee CG7604-RA (Eig71Ee), mRNA Length = 1358 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 tgctctctgtgcaagtacaa 239 |||||||||||||||||||| Sbjct: 723 tgctctctgtgcaagtacaa 704
>gb|U23836.1|DMU23836 Drosophila melanogaster third instar late genes L71-1 to L71-11 and intermolt gene I71-7 Length = 13865 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tgctctctgtgcaagtacaa 239 |||||||||||||||||||| Sbjct: 7433 tgctctctgtgcaagtacaa 7452 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tgctctctgtgcaagtacaa 239 |||||||||||||||||||| Sbjct: 7229 tgctctctgtgcaagtacaa 7248 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tgctctctgtgcaagtacaa 239 |||||||||||||||||||| Sbjct: 7025 tgctctctgtgcaagtacaa 7044
>gb|U24246.1|DMU24246 Drosophila melanogaster I71-7 mRNA, complete cds Length = 1704 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 tgctctctgtgcaagtacaa 239 |||||||||||||||||||| Sbjct: 926 tgctctctgtgcaagtacaa 907 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 tgctctctgtgcaagtacaa 239 |||||||||||||||||||| Sbjct: 722 tgctctctgtgcaagtacaa 703 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 tgctctctgtgcaagtacaa 239 |||||||||||||||||||| Sbjct: 518 tgctctctgtgcaagtacaa 499
>gb|AF289544.1|AF289544 Oryza sativa copI gene, complete cds Length = 5363 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 ttgttcatcactagagttct 60 |||||||||||||||||||| Sbjct: 956 ttgttcatcactagagttct 975
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 ttgttcatcactagagttct 60 |||||||||||||||||||| Sbjct: 32550983 ttgttcatcactagagttct 32550964
>gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence Length = 541399 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 acaacagcagttgaaacatc 255 |||||||||||||||||||| Sbjct: 177343 acaacagcagttgaaacatc 177324
>dbj|AP004058.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1353_F08 Length = 101988 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 ttgttcatcactagagttct 60 |||||||||||||||||||| Sbjct: 47956 ttgttcatcactagagttct 47937
>emb|Z82546.1|RPZ82546 R.prowazekii genomic DNA fragment (clone A188R) Length = 457 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 tatgaaatattttgagacta 33 |||||||||||||||||||| Sbjct: 260 tatgaaatattttgagacta 241
>gb|AE003530.3| Drosophila melanogaster chromosome 3L, section 55 of 83 of the complete sequence Length = 279152 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tgctctctgtgcaagtacaa 239 |||||||||||||||||||| Sbjct: 166020 tgctctctgtgcaagtacaa 166039 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,734,606 Number of Sequences: 3902068 Number of extensions: 2734606 Number of successful extensions: 51505 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51427 Number of HSP's gapped (non-prelim): 77 length of query: 284 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 262 effective length of database: 17,147,199,772 effective search space: 4492566340264 effective search space used: 4492566340264 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)