ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet40c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB063117.1| Hordeum vulgare HvAPX1 mRNA for peroxisome type ... 486 e-134
2ref|XM_483666.1| Oryza sativa (japonica cultivar-group), mRNA 123 3e-25
3ref|XM_507324.1| PREDICTED Oryza sativa (japonica cultivar-group... 123 3e-25
4gb|AY459336.1| Oryza sativa (japonica cultivar-group) clone CL03... 123 3e-25
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 123 3e-25
6dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic D... 123 3e-25
7dbj|AK104490.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 3e-25
8dbj|AK070842.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 3e-25
9gb|BT016732.1| Zea mays clone Contig565 mRNA sequence 84 3e-13
10gb|AY109419.1| Zea mays CL26634_1 mRNA sequence 84 3e-13
11gb|AY789051.1| Populus tomentosa ascorbate peroxidase mRNA, comp... 42 0.94
12ref|XM_456196.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F25036g ... 42 0.94
13emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 42 0.94
14gb|AC109359.4| Homo sapiens BAC clone RP11-679M12 from 4, comple... 42 0.94
15ref|XM_639988.1| Dictyostelium discoideum hypothetical protein (... 40 3.7
16ref|XM_639242.1| Dictyostelium discoideum hypothetical protein (... 40 3.7
17emb|AL035665.32|HS644L1 Human DNA sequence from clone RP4-644L1 ... 40 3.7
18emb|Z99108.2|BSUB0005 Bacillus subtilis complete genome (section... 40 3.7
19emb|X96983.1|BS75DGREG B.subtilis chromosomal DNA (region 75 deg... 40 3.7
20emb|AJ235271.1|RPXX02 Rickettsia prowazekii strain Madrid E, com... 40 3.7
21emb|CR394542.5| Zebrafish DNA sequence from clone DKEY-91I10 in ... 40 3.7
22gb|AY119006.1| Drosophila melanogaster LP03361 full insert cDNA 40 3.7
23gb|AC010695.5| Drosophila melanogaster 3L BAC RP98-20J4 (Roswell... 40 3.7
24gb|AC010574.5| Drosophila melanogaster 3L BAC RP98-7L7 (Roswell ... 40 3.7
25ref|NM_079368.2| Drosophila melanogaster Ecdysone-induced gene 7... 40 3.7
26gb|U23836.1|DMU23836 Drosophila melanogaster third instar late g... 40 3.7
27gb|U24246.1|DMU24246 Drosophila melanogaster I71-7 mRNA, complet... 40 3.7
28gb|AF289544.1|AF289544 Oryza sativa copI gene, complete cds 40 3.7
29dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
30gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470... 40 3.7
31dbj|AP004058.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
32emb|Z82546.1|RPZ82546 R.prowazekii genomic DNA fragment (clone A... 40 3.7
33gb|AE003530.3| Drosophila melanogaster chromosome 3L, section 55... 40 3.7

>dbj|AB063117.1| Hordeum vulgare HvAPX1 mRNA for peroxisome type ascorbate peroxidase,
            complete cds
          Length = 1089

 Score =  486 bits (245), Expect = e-134
 Identities = 271/282 (96%)
 Strand = Plus / Minus

                                                                        
Query: 3    cctcaagaatgtatgaaatattttgagactactgttggttgttcatcactagagttctgt 62
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 cctcaagaatgtatgaaatattttgagactactgttggttgttcatcactagagttctgt 980

                                                                        
Query: 63   tatttgcacttggcacttannnnnnnagaataataacttgatccttactaaataagggaa 122
            |||||||||||||||||||       |||||||||||||||| |||||||||||||||||
Sbjct: 979  tatttgcacttggcacttatttttttagaataataacttgatacttactaaataagggaa 920

                                                                        
Query: 123  tgtcatccaagaactcacgaaccccttacttgctccttttggaagcttcgtacaggtagc 182
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 919  tgtcatccaagaactcacgaaccccttacttgctcctcttggaagcttcgtacaggtagc 860

                                                                        
Query: 183  ccgcgataactacagctgcagcaactgctaccccgactgctctctgtgcaagtacaacag 242
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 859  ccgcgataactacagctgcagcaactgctaccccgactgcactctgtgcaagtacaacag 800

                                                      
Query: 243  cagttgaaacatctgattttgtaaatgctgggccactgctcc 284
            ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 799  cagttgaaacatctgattttgtagatgctgggccactgctcc 758



to top

>ref|XM_483666.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1158

 Score =  123 bits (62), Expect = 3e-25
 Identities = 119/138 (86%)
 Strand = Plus / Minus

                                                                       
Query: 147 cttacttgctccttttggaagcttcgtacaggtagcccgcgataactacagctgcagcaa 206
           ||||||||||| | || ||||| ||||| ||||||| | |||||||||||||||||||||
Sbjct: 983 cttacttgctcttcttagaagcctcgtataggtagctcacgataactacagctgcagcaa 924

                                                                       
Query: 207 ctgctaccccgactgctctctgtgcaagtacaacagcagttgaaacatctgattttgtaa 266
           | ||||||||||| || |||||||| |||||| || ||||||||| ||| ||||| ||| 
Sbjct: 923 cagctaccccgacagcactctgtgcgagtacagcaccagttgaaagatcagatttcgtag 864

                             
Query: 267 atgctgggccactgctcc 284
           |||| ||||| |||||||
Sbjct: 863 atgcagggccgctgctcc 846



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 45   tcatcactagagttctgttatttg 68
            ||||||||||| ||||||||||||
Sbjct: 1053 tcatcactagaattctgttatttg 1030



to top

>ref|XM_507324.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1479_B11.9 mRNA
          Length = 1229

 Score =  123 bits (62), Expect = 3e-25
 Identities = 119/138 (86%)
 Strand = Plus / Minus

                                                                       
Query: 147 cttacttgctccttttggaagcttcgtacaggtagcccgcgataactacagctgcagcaa 206
           ||||||||||| | || ||||| ||||| ||||||| | |||||||||||||||||||||
Sbjct: 994 cttacttgctcttcttagaagcctcgtataggtagctcacgataactacagctgcagcaa 935

                                                                       
Query: 207 ctgctaccccgactgctctctgtgcaagtacaacagcagttgaaacatctgattttgtaa 266
           | ||||||||||| || |||||||| |||||| || ||||||||| ||| ||||| ||| 
Sbjct: 934 cagctaccccgacagcactctgtgcgagtacagcaccagttgaaagatcagatttcgtag 875

                             
Query: 267 atgctgggccactgctcc 284
           |||| ||||| |||||||
Sbjct: 874 atgcagggccgctgctcc 857



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 45   tcatcactagagttctgttatttg 68
            ||||||||||| ||||||||||||
Sbjct: 1064 tcatcactagaattctgttatttg 1041



to top

>gb|AY459336.1| Oryza sativa (japonica cultivar-group) clone CL034244.2 R2R3-MYB gene
             region
          Length = 65993

 Score =  123 bits (62), Expect = 3e-25
 Identities = 119/138 (86%)
 Strand = Plus / Plus

                                                                         
Query: 147   cttacttgctccttttggaagcttcgtacaggtagcccgcgataactacagctgcagcaa 206
             ||||||||||| | || ||||| ||||| ||||||| | |||||||||||||||||||||
Sbjct: 53367 cttacttgctcttcttagaagcctcgtataggtagctcacgataactacagctgcagcaa 53426

                                                                         
Query: 207   ctgctaccccgactgctctctgtgcaagtacaacagcagttgaaacatctgattttgtaa 266
             | ||||||||||| || |||||||| |||||| || ||||||||| ||| ||||| ||| 
Sbjct: 53427 cagctaccccgacagcactctgtgcgagtacagcaccagttgaaagatcagatttcgtag 53486

                               
Query: 267   atgctgggccactgctcc 284
             |||| ||||| |||||||
Sbjct: 53487 atgcagggccgctgctcc 53504



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 45    tcatcactagagttctgttatttg 68
             ||||||||||| ||||||||||||
Sbjct: 53297 tcatcactagaattctgttatttg 53320



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  123 bits (62), Expect = 3e-25
 Identities = 119/138 (86%)
 Strand = Plus / Plus

                                                                            
Query: 147      cttacttgctccttttggaagcttcgtacaggtagcccgcgataactacagctgcagcaa 206
                ||||||||||| | || ||||| ||||| ||||||| | |||||||||||||||||||||
Sbjct: 27548327 cttacttgctcttcttagaagcctcgtataggtagctcacgataactacagctgcagcaa 27548386

                                                                            
Query: 207      ctgctaccccgactgctctctgtgcaagtacaacagcagttgaaacatctgattttgtaa 266
                | ||||||||||| || |||||||| |||||| || ||||||||| ||| ||||| ||| 
Sbjct: 27548387 cagctaccccgacagcactctgtgcgagtacagcaccagttgaaagatcagatttcgtag 27548446

                                  
Query: 267      atgctgggccactgctcc 284
                |||| ||||| |||||||
Sbjct: 27548447 atgcagggccgctgctcc 27548464



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 45       tcatcactagagttctgttatttg 68
                ||||||||||| ||||||||||||
Sbjct: 27548257 tcatcactagaattctgttatttg 27548280



to top

>dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1479_B11
          Length = 105702

 Score =  123 bits (62), Expect = 3e-25
 Identities = 119/138 (86%)
 Strand = Plus / Plus

                                                                         
Query: 147   cttacttgctccttttggaagcttcgtacaggtagcccgcgataactacagctgcagcaa 206
             ||||||||||| | || ||||| ||||| ||||||| | |||||||||||||||||||||
Sbjct: 30617 cttacttgctcttcttagaagcctcgtataggtagctcacgataactacagctgcagcaa 30676

                                                                         
Query: 207   ctgctaccccgactgctctctgtgcaagtacaacagcagttgaaacatctgattttgtaa 266
             | ||||||||||| || |||||||| |||||| || ||||||||| ||| ||||| ||| 
Sbjct: 30677 cagctaccccgacagcactctgtgcgagtacagcaccagttgaaagatcagatttcgtag 30736

                               
Query: 267   atgctgggccactgctcc 284
             |||| ||||| |||||||
Sbjct: 30737 atgcagggccgctgctcc 30754



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 45    tcatcactagagttctgttatttg 68
             ||||||||||| ||||||||||||
Sbjct: 30547 tcatcactagaattctgttatttg 30570



to top

>dbj|AK104490.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B09, full
           insert sequence
          Length = 1158

 Score =  123 bits (62), Expect = 3e-25
 Identities = 119/138 (86%)
 Strand = Plus / Minus

                                                                       
Query: 147 cttacttgctccttttggaagcttcgtacaggtagcccgcgataactacagctgcagcaa 206
           ||||||||||| | || ||||| ||||| ||||||| | |||||||||||||||||||||
Sbjct: 983 cttacttgctcttcttagaagcctcgtataggtagctcacgataactacagctgcagcaa 924

                                                                       
Query: 207 ctgctaccccgactgctctctgtgcaagtacaacagcagttgaaacatctgattttgtaa 266
           | ||||||||||| || |||||||| |||||| || ||||||||| ||| ||||| ||| 
Sbjct: 923 cagctaccccgacagcactctgtgcgagtacagcaccagttgaaagatcagatttcgtag 864

                             
Query: 267 atgctgggccactgctcc 284
           |||| ||||| |||||||
Sbjct: 863 atgcagggccgctgctcc 846



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 45   tcatcactagagttctgttatttg 68
            ||||||||||| ||||||||||||
Sbjct: 1053 tcatcactagaattctgttatttg 1030



to top

>dbj|AK070842.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074O14, full
           insert sequence
          Length = 1229

 Score =  123 bits (62), Expect = 3e-25
 Identities = 119/138 (86%)
 Strand = Plus / Minus

                                                                       
Query: 147 cttacttgctccttttggaagcttcgtacaggtagcccgcgataactacagctgcagcaa 206
           ||||||||||| | || ||||| ||||| ||||||| | |||||||||||||||||||||
Sbjct: 994 cttacttgctcttcttagaagcctcgtataggtagctcacgataactacagctgcagcaa 935

                                                                       
Query: 207 ctgctaccccgactgctctctgtgcaagtacaacagcagttgaaacatctgattttgtaa 266
           | ||||||||||| || |||||||| |||||| || ||||||||| ||| ||||| ||| 
Sbjct: 934 cagctaccccgacagcactctgtgcgagtacagcaccagttgaaagatcagatttcgtag 875

                             
Query: 267 atgctgggccactgctcc 284
           |||| ||||| |||||||
Sbjct: 874 atgcagggccgctgctcc 857



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 45   tcatcactagagttctgttatttg 68
            ||||||||||| ||||||||||||
Sbjct: 1064 tcatcactagaattctgttatttg 1041



to top

>gb|BT016732.1| Zea mays clone Contig565 mRNA sequence
          Length = 1248

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 66/74 (89%)
 Strand = Plus / Minus

                                                                       
Query: 161 ttggaagcttcgtacaggtagcccgcgataactacagctgcagcaactgctaccccgact 220
           |||||||| ||||||| |||||| ||||||||||| |||||||||||||||||||| |  
Sbjct: 993 ttggaagcctcgtacaagtagccagcgataactacggctgcagcaactgctaccccaaag 934

                         
Query: 221 gctctctgtgcaag 234
           || |||||||||||
Sbjct: 933 gcactctgtgcaag 920



to top

>gb|AY109419.1| Zea mays CL26634_1 mRNA sequence
          Length = 1373

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                       
Query: 161 ttggaagcttcgtacaggtagcccgcgataactacagctgcagcaactgctaccccgact 220
           |||||||| ||||||| |||||| ||||||||||| |||||||||||||||||||| |  
Sbjct: 416 ttggaagcctcgtacaagtagccagcgataactacggctgcagcaactgctaccccaaag 475

                         
Query: 221 gctctctgtgcaag 234
           || |||||||||||
Sbjct: 476 gcactctgtgcaag 489



to top

>gb|AY789051.1| Populus tomentosa ascorbate peroxidase mRNA, complete cds
          Length = 969

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 194 acagctgcagcaactgctaccccgactgctctctgtgcaagtaca 238
           |||||||| ||||||||||| || ||||| || ||||| ||||||
Sbjct: 831 acagctgccgcaactgctactccaactgcactttgtgctagtaca 787



to top

>ref|XM_456196.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F25036g predicted mRNA
          Length = 1170

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 242 gcagttgaaacatctgatttt 262
           |||||||||||||||||||||
Sbjct: 369 gcagttgaaacatctgatttt 389



to top

>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2602197

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 242     gcagttgaaacatctgatttt 262
               |||||||||||||||||||||
Sbjct: 2329833 gcagttgaaacatctgatttt 2329853



to top

>gb|AC109359.4| Homo sapiens BAC clone RP11-679M12 from 4, complete sequence
          Length = 134897

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 55    agttctgttatttgcacttgg 75
             |||||||||||||||||||||
Sbjct: 53242 agttctgttatttgcacttgg 53262



to top

>ref|XM_639988.1| Dictyostelium discoideum hypothetical protein (DDB0168011), partial
            mRNA
          Length = 4611

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 236  acaacagcagttgaaacatc 255
            ||||||||||||||||||||
Sbjct: 1870 acaacagcagttgaaacatc 1889



to top

>ref|XM_639242.1| Dictyostelium discoideum hypothetical protein (DDB0217388), partial
            mRNA
          Length = 4611

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 236  acaacagcagttgaaacatc 255
            ||||||||||||||||||||
Sbjct: 1870 acaacagcagttgaaacatc 1889



to top

>emb|AL035665.32|HS644L1 Human DNA sequence from clone RP4-644L1 on chromosome 20q12 Contains the
              MAFB gene for v-maf musculoaponeurotic fibrosarcoma
              oncogene homolog B (avian), a novel gene and two CpG
              islands, complete sequence
          Length = 145593

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 253    atctgattttgtaaatgctg 272
              ||||||||||||||||||||
Sbjct: 115360 atctgattttgtaaatgctg 115341



to top

>emb|Z99108.2|BSUB0005 Bacillus subtilis complete genome (section 5 of 21): from 813670 to
              1011078
          Length = 197409

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 184    cgcgataactacagctgcagcaactgct 211
              ||||||| | ||||||||||||||||||
Sbjct: 173030 cgcgataccgacagctgcagcaactgct 173003



to top

>emb|X96983.1|BS75DGREG B.subtilis chromosomal DNA (region 75 degrees: cspB upstream of
            glpPFKD operon)
          Length = 21808

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 184  cgcgataactacagctgcagcaactgct 211
            ||||||| | ||||||||||||||||||
Sbjct: 8245 cgcgataccgacagctgcagcaactgct 8218



to top

>emb|AJ235271.1|RPXX02 Rickettsia prowazekii strain Madrid E, complete genome; segment 2/4
          Length = 312430

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     tatgaaatattttgagacta 33
              ||||||||||||||||||||
Sbjct: 113468 tatgaaatattttgagacta 113487



to top

>emb|CR394542.5| Zebrafish DNA sequence from clone DKEY-91I10 in linkage group 9,
             complete sequence
          Length = 193811

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 246   ttgaaacatctgattttgtaaatg 269
             ||||||||| ||||||||||||||
Sbjct: 78094 ttgaaacatttgattttgtaaatg 78117



to top

>gb|AY119006.1| Drosophila melanogaster LP03361 full insert cDNA
          Length = 1525

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 tgctctctgtgcaagtacaa 239
           ||||||||||||||||||||
Sbjct: 715 tgctctctgtgcaagtacaa 696



to top

>gb|AC010695.5| Drosophila melanogaster 3L BAC RP98-20J4 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 160650

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 220  tgctctctgtgcaagtacaa 239
            ||||||||||||||||||||
Sbjct: 7053 tgctctctgtgcaagtacaa 7072



to top

>gb|AC010574.5| Drosophila melanogaster 3L BAC RP98-7L7 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 162402

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 220    tgctctctgtgcaagtacaa 239
              ||||||||||||||||||||
Sbjct: 152988 tgctctctgtgcaagtacaa 153007



to top

>ref|NM_079368.2| Drosophila melanogaster Ecdysone-induced gene 71Ee CG7604-RA
           (Eig71Ee), mRNA
          Length = 1358

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 tgctctctgtgcaagtacaa 239
           ||||||||||||||||||||
Sbjct: 723 tgctctctgtgcaagtacaa 704



to top

>gb|U23836.1|DMU23836 Drosophila melanogaster third instar late genes L71-1 to L71-11 and
            intermolt gene I71-7
          Length = 13865

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 220  tgctctctgtgcaagtacaa 239
            ||||||||||||||||||||
Sbjct: 7433 tgctctctgtgcaagtacaa 7452



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 220  tgctctctgtgcaagtacaa 239
            ||||||||||||||||||||
Sbjct: 7229 tgctctctgtgcaagtacaa 7248



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 220  tgctctctgtgcaagtacaa 239
            ||||||||||||||||||||
Sbjct: 7025 tgctctctgtgcaagtacaa 7044



to top

>gb|U24246.1|DMU24246 Drosophila melanogaster I71-7 mRNA, complete cds
          Length = 1704

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 tgctctctgtgcaagtacaa 239
           ||||||||||||||||||||
Sbjct: 926 tgctctctgtgcaagtacaa 907



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 tgctctctgtgcaagtacaa 239
           ||||||||||||||||||||
Sbjct: 722 tgctctctgtgcaagtacaa 703



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 tgctctctgtgcaagtacaa 239
           ||||||||||||||||||||
Sbjct: 518 tgctctctgtgcaagtacaa 499



to top

>gb|AF289544.1|AF289544 Oryza sativa copI gene, complete cds
          Length = 5363

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 41  ttgttcatcactagagttct 60
           ||||||||||||||||||||
Sbjct: 956 ttgttcatcactagagttct 975



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 41       ttgttcatcactagagttct 60
                ||||||||||||||||||||
Sbjct: 32550983 ttgttcatcactagagttct 32550964



to top

>gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4,
              complete sequence
          Length = 541399

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 236    acaacagcagttgaaacatc 255
              ||||||||||||||||||||
Sbjct: 177343 acaacagcagttgaaacatc 177324



to top

>dbj|AP004058.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1353_F08
          Length = 101988

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    ttgttcatcactagagttct 60
             ||||||||||||||||||||
Sbjct: 47956 ttgttcatcactagagttct 47937



to top

>emb|Z82546.1|RPZ82546 R.prowazekii genomic DNA fragment (clone A188R)
          Length = 457

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 14  tatgaaatattttgagacta 33
           ||||||||||||||||||||
Sbjct: 260 tatgaaatattttgagacta 241



to top

>gb|AE003530.3| Drosophila melanogaster chromosome 3L, section 55 of 83 of the complete
              sequence
          Length = 279152

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 220    tgctctctgtgcaagtacaa 239
              ||||||||||||||||||||
Sbjct: 166020 tgctctctgtgcaagtacaa 166039


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,734,606
Number of Sequences: 3902068
Number of extensions: 2734606
Number of successful extensions: 51505
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51427
Number of HSP's gapped (non-prelim): 77
length of query: 284
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 262
effective length of database: 17,147,199,772
effective search space: 4492566340264
effective search space used: 4492566340264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top