ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet40b12 |
|---|---|
| Clone Library Name | barley_pub |
>RS13_METMA (Q8PV19) 30S ribosomal protein S13P| Length = 162 Score = 32.0 bits (71), Expect = 0.38 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = -2 Query: 356 EIKGQRPAHVEY---GLDGVGEEGAVLVQPDADGRGRVVTAVLPKDEAEALRAALG 198 ++KG +P VEY GL G+G A+L+ A LP +E L AA+G Sbjct: 30 DLKGAKP--VEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDAAIG 83
>APOL2_HUMAN (Q9BQE5) Apolipoprotein-L2 (Apolipoprotein L-II) (ApoL-II)| Length = 337 Score = 31.2 bits (69), Expect = 0.64 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -2 Query: 332 HVEYGLDGVGEEGAV-LVQPDADGRGRVVTAVLPKDEAEALRAALGSTLLH 183 +++Y D V E + L+ D G V A LP+DEA+ LR AL H Sbjct: 12 YLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLASH 62
>RS13_METBF (Q46GC7) 30S ribosomal protein S13P| Length = 162 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Frame = -2 Query: 356 EIKGQRPAHVEY---GLDGVGEEGAVLVQPDADGRGRVVTAVLPKDEAEALRAALGS 195 ++KG +P VEY GL G+G A+L+ A LP +E L A+G+ Sbjct: 30 DLKGAKP--VEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDRAIGN 84
>SODM_NEUCR (Q9Y783) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 245 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/44 (31%), Positives = 20/44 (45%) Frame = +1 Query: 52 HSQSHHTRIDHRNNLRKPRSKTIKGKLVPSDILITTQLKFQGAG 183 HS+ H T + + NN K I +P+ I +KF G G Sbjct: 59 HSKHHQTYVTNLNNALKVHVAAIASSDIPAQIAQQPAIKFNGGG 102
>CH10_BURCE (Q9ZFE1) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 97 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +3 Query: 150 DYHPTEVSGSRVQERAAERGAEGLRLVLGEHRRDDAAAPVGV 275 D SG + + AAE+ +G L +G +RDD AP+ + Sbjct: 16 DQETKTASGIVIPDAAAEKPDQGEVLAIGPGKRDDKGAPIAL 57
>BNC1_HUMAN (Q01954) Zinc finger protein basonuclin-1| Length = 994 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = -2 Query: 353 IKGQRPAHVEYGLDGVGEEGAVLVQPDADGRGRVVTAVLPKDE 225 +K + +H + DGV EEG VL++ D+DG + V +DE Sbjct: 864 MKSESSSHSSWDSDGVSEEGTVLME-DSDGNCEGSSLVPGEDE 905
>MURC_NOCFA (Q5YYX8) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)| (UDP-N-acetylmuramoyl-L-alanine synthetase) Length = 501 Score = 29.3 bits (64), Expect = 2.4 Identities = 19/35 (54%), Positives = 19/35 (54%) Frame = +3 Query: 180 RVQERAAERGAEGLRLVLGEHRRDDAAAPVGVRLH 284 RV R AERG L GE DA PVGVRLH Sbjct: 245 RVGPRLAERGVRVLGYGSGELA--DAPVPVGVRLH 277
>BTBDA_PONPY (Q5R585) BTB/POZ domain-containing protein 10| Length = 475 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Frame = -2 Query: 266 GRGRVVTAVLPKDEAE-ALRAALGSTLLHPAP*NFSWVVIRISDGTSLPLIVFERGFLRL 90 G GR P ++ E + +GST+ + +IR DG S+P Sbjct: 198 GSGREHNFTRPNEKGEYEVAEGIGSTVFRAILDYYKTGIIRCPDGISIP----------- 246 Query: 89 FR*SMRVWCDWLCVRYE 39 +R CD+LC+ +E Sbjct: 247 ---ELREACDYLCISFE 260
>BTBDA_MOUSE (Q80X66) BTB/POZ domain-containing protein 10| Length = 475 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Frame = -2 Query: 266 GRGRVVTAVLPKDEAE-ALRAALGSTLLHPAP*NFSWVVIRISDGTSLPLIVFERGFLRL 90 G GR P ++ E + +GST+ + +IR DG S+P Sbjct: 198 GSGREHNFTRPNEKGEYEVAEGIGSTVFRAILDYYKTGIIRCPDGISIP----------- 246 Query: 89 FR*SMRVWCDWLCVRYE 39 +R CD+LC+ +E Sbjct: 247 ---ELREACDYLCISFE 260
>BTBDA_HUMAN (Q9BSF8) BTB/POZ domain-containing protein 10| Length = 475 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Frame = -2 Query: 266 GRGRVVTAVLPKDEAE-ALRAALGSTLLHPAP*NFSWVVIRISDGTSLPLIVFERGFLRL 90 G GR P ++ E + +GST+ + +IR DG S+P Sbjct: 198 GSGREHNFTRPNEKGEYEVAEGIGSTVFRAILDYYKTGIIRCPDGISIP----------- 246 Query: 89 FR*SMRVWCDWLCVRYE 39 +R CD+LC+ +E Sbjct: 247 ---ELREACDYLCISFE 260
>Y1686_STRPN (Q54728) Hypothetical oxidoreductase SP1686 (EC 1.-.-.-)| Length = 367 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = -2 Query: 329 VEYGLDGVGEEGAVLVQPDADGRGRVVTAVLPKDEAEALRAALGS 195 V+YG+ G G GA L + G +T + D AEA+ LG+ Sbjct: 2 VKYGVVGTGYFGAELARYMQKNDGAEITLLYDPDNAEAIAEELGA 46
>KGUA_MANSM (Q65RR5) Guanylate kinase (EC 2.7.4.8) (GMP kinase)| Length = 208 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/65 (23%), Positives = 29/65 (44%) Frame = -2 Query: 290 VLVQPDADGRGRVVTAVLPKDEAEALRAALGSTLLHPAP*NFSWVVIRISDGTSLPLIVF 111 +L P G+ +++A+L +D+A + ++ T P P + V L++ Sbjct: 8 ILSAPSGAGKSSLISALLEQDQANTMMVSVSHTTRQPRPGEENGVHYHFVSVEEFELLIN 67 Query: 110 ERGFL 96 E FL Sbjct: 68 EGAFL 72
>CH16_DROGR (P24510) Chorion protein S16| Length = 142 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/22 (63%), Positives = 15/22 (68%) Frame = -2 Query: 266 GRGRVVTAVLPKDEAEALRAAL 201 GRGRV+ V P D AEA AAL Sbjct: 33 GRGRVIDVVKPVDTAEAQAAAL 54
>BIR1_YEAST (P47134) Protein BIR1| Length = 954 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/20 (55%), Positives = 17/20 (85%) Frame = +1 Query: 85 RNNLRKPRSKTIKGKLVPSD 144 R NL++PRS +I GK+VP++ Sbjct: 630 RKNLQEPRSLSISGKVVPTE 649
>BNC1_MOUSE (O35914) Zinc finger protein basonuclin-1| Length = 961 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = -2 Query: 353 IKGQRPAHVEYGLDGVGEEGAVLVQPDADGRGRVVTAVLPKDE 225 +K + +H + DGV EEG L++ D+DG + V +DE Sbjct: 831 MKSESSSHSSWDSDGVSEEGTALME-DSDGNCEGQSLVSGEDE 872
>IRX6_HUMAN (P78412) Iroquois-class homeodomain protein IRX-6 (Iroquois| homeobox protein 6) (Homeodomain protein IRXB3) Length = 445 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/53 (32%), Positives = 24/53 (45%) Frame = +3 Query: 93 PQETTLENYQR*ARAI*YSDYHPTEVSGSRVQERAAERGAEGLRLVLGEHRRD 251 P E TL YQ Y Y E+SG+ ++ A L+ L EHR++ Sbjct: 126 PYERTLGQYQ-------YERYGAVELSGAGRRKNATRETTSTLKAWLNEHRKN 171
>YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region| Length = 153 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = +3 Query: 36 TFVPHTQPITPHPHRSP 86 T PH P TPHPH +P Sbjct: 42 TPTPHPHPHTPHPHTTP 58
>RS13_METAC (Q8TRR2) 30S ribosomal protein S13P| Length = 162 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = -2 Query: 356 EIKGQRPAHVEY---GLDGVGEEGAVLVQPDADGRGRVVTAVLPKDEAEALRAALG 198 +++G +P V+Y GL GVG A L+ A + LP++E L A+G Sbjct: 30 DLQGAKP--VQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAKLDTAIG 83
>BBX_MOUSE (Q8VBW5) HMG box transcription factor BBX (Bobby sox homolog) (HMG| box-containing protein 2) Length = 907 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/37 (29%), Positives = 23/37 (62%) Frame = -2 Query: 326 EYGLDGVGEEGAVLVQPDADGRGRVVTAVLPKDEAEA 216 ++G+D +GE V+P + G+G ++ A PK + ++ Sbjct: 495 DWGVDKLGETPRKKVRPSSSGKGGILDAKPPKKKVKS 531
>RL7_STAS1 (Q49V50) 50S ribosomal protein L7/L12| Length = 122 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -2 Query: 269 DGRGRVVTAVLPKDEAEALRAAL 201 DG +V+ LPK+EAE L+ AL Sbjct: 90 DGAPKVIKEALPKEEAEKLKEAL 112
>GID_CAUCR (Q9A566) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gid Length = 474 Score = 27.7 bits (60), Expect = 7.1 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Frame = +3 Query: 147 SDYHPTEVSGSRV--QERAAERGAEGLRLVLGEHRRDDAAAPVGVRLHQ 287 S Y P V G + E A + G+ ++L E R+DDA V HQ Sbjct: 5 STYQPVHVIGGGLAGSEAAWQIAQSGVPVILHEMRKDDATGKVITDAHQ 53
>EAF6_YEAST (P47128) Chromatin modification-related protein EAF6| (ESA1-associated factor 6) Length = 113 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +1 Query: 13 SNLFGNILRSYRTHSQSHHTRIDHRNN 93 S+ GNI++ + T S+SHH+ D N Sbjct: 63 SHYSGNIIKGFDTFSKSHHSHADSAFN 89
>SYH_RHIME (Q92RR7) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 504 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/32 (37%), Positives = 22/32 (68%) Frame = +3 Query: 162 TEVSGSRVQERAAERGAEGLRLVLGEHRRDDA 257 T ++ R ++ + G EG+RL+LGE R+D++ Sbjct: 196 TRLTVLRAIDKLDKFGPEGVRLLLGEGRKDES 227 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,002,033 Number of Sequences: 219361 Number of extensions: 731527 Number of successful extensions: 2442 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2409 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2442 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
