Clone Information

BLAST Search Result

Clone Name	rbaet40b12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_473854.1\| Oryza sativa (japonica cultivar-group), predic...	208	9e-51
2	emb\|AL731610.4\|OSJN00255 Oryza sativa genomic DNA, chromosome 4,...	208	9e-51
3	emb\|AL606684.3\|OSJN00088 Oryza sativa genomic DNA, chromosome 4,...	208	9e-51
4	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	208	9e-51
5	emb\|X88779.1\|ZMGLOSSY Z.mays Glossy2 locus DNA	182	5e-43
6	gb\|AY109951.1\| Zea mays CL2305_1 mRNA sequence	119	7e-24
7	gb\|AE006033.1\| Caulobacter crescentus CB15 section 359 of 359 of...	44	0.32
8	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	44	0.32
9	gb\|U87804.2\|CCU87804 Caulobacter crescentus 50 kDa protein (ogt)...	44	0.32
10	ref\|NM_187497.1\| Oryza sativa (japonica cultivar-group), predic...	42	1.3
11	ref\|XM_594248.2\| PREDICTED: Bos taurus similar to CG2446-PC, iso...	42	1.3
12	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	42	1.3
13	dbj\|AP007255.1\| Magnetospirillum magneticum AMB-1 DNA, complete ...	42	1.3
14	gb\|AC135209.2\| Oryza sativa (japonica cultivar-group) chromosome...	42	1.3
15	gb\|AC135207.2\| Oryza sativa (japonica cultivar-group) chromosome...	42	1.3
16	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.3
17	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	42	1.3
18	gb\|AE005111.1\| Halobacterium sp. NRC-1 section 142 of 170 of the...	42	1.3
19	dbj\|AK106069.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.3
20	dbj\|AK061579.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.3
21	ref\|NM_188790.1\| Oryza sativa (japonica cultivar-group), predic...	40	5.0
22	ref\|XM_469291.1\| Oryza sativa (japonica cultivar-group), mRNA	40	5.0
23	gb\|CP000010.1\| Burkholderia mallei ATCC 23344 chromosome 1, comp...	40	5.0
24	gb\|AC133335.4\| Oryza sativa chromosome 3 BAC OSJNBa0005H05 genom...	40	5.0
25	ref\|XM_368192.1\| Magnaporthe grisea 70-15 chromosome VI hypothet...	40	5.0
26	gb\|CP000124.1\| Burkholderia pseudomallei 1710b chromosome I, com...	40	5.0
27	gb\|AY261359.1\| Bovine herpesvirus 5 strain SV507/99, complete ge...	40	5.0
28	ref\|XM_752403.1\| Ustilago maydis 521 hypothetical protein (UM013...	40	5.0
29	gb\|AC132427.4\| Mus musculus BAC clone RP23-326N11 from chromosom...	40	5.0
30	gb\|AC007789.1\| Oryza sativa BAC OSJNBa0049B20 genomic sequence, ...	40	5.0
31	gb\|AC142284.1\| Pan troglodytes BAC clone RP43-163P11 from 7, com...	40	5.0
32	gb\|CP000283.1\| Rhodopseudomonas palustris BisB5, complete genome	40	5.0
33	emb\|BX571965.1\| Burkholderia pseudomallei strain K96243, chromos...	40	5.0
34	emb\|AL939115.1\|SCO939115 Streptomyces coelicolor A3(2) complete ...	40	5.0
35	gb\|DQ354110.1\| Streptomyces violaceusniger strain DSM 4137 polye...	40	5.0
36	gb\|AC090485.3\|AC090485 Genomic Sequence for Oryza sativa, Nippon...	40	5.0
37	gb\|AC004886.1\| Homo sapiens PAC clone RP4-784G16 from 7, complet...	40	5.0
38	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.0
39	gb\|AC079889.20\| Oryza sativa chromosome 3 BAC OSJNBa0092M19 geno...	40	5.0
40	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	5.0
41	gb\|AC119796.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.0
42	dbj\|AP002865.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.0
43	dbj\|AP006618.1\| Nocardia farcinica IFM 10152 DNA, complete genome	40	5.0
44	gb\|AE005110.1\| Halobacterium sp. NRC-1 section 141 of 170 of the...	40	5.0
45	dbj\|AK111100.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	5.0
46	emb\|AJ337526.1\|HSA337526 Homo sapiens genomic sequence surroundi...	40	5.0
47	dbj\|AK065520.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	5.0
48	gb\|AY108297.1\| Zea mays PCO134827 mRNA sequence	40	5.0
49	gb\|CP000085.1\| Burkholderia thailandensis E264 chromosome II, co...	40	5.0

>ref|XM_473854.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1314

 Score =  208 bits (105), Expect = 9e-51
 Identities = 162/181 (89%)
 Strand = Plus / Minus

                                                                        
Query: 185  gcaggagcgtgctgccgagcgcggcgcggagggcctccgcctcgtccttggggagcaccg 244
            ||||||||||||| ||||||||||||||||||   ||  |||||||| |||||| |||| 
Sbjct: 1297 gcaggagcgtgctcccgagcgcggcgcggaggctgtcgacctcgtccctggggatcacca 1238

                                                                        
Query: 245  ccgtgacgacgcggccgcgcccgtcggcgtccggctgcaccagcacggcgccctcctcgc 304
            ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1237 ccgtgacgacgcggccgcggccgccggcgtccggctgcaccagcacggcgccctcctcgc 1178

                                                                        
Query: 305  cgacgccgtccaggccgtactcgacgtgcgccggccgctgccccttgatctccagcccgt 364
            |||||||||| ||||||||||| |||||  | |||||||||||||| | ||||||| |||
Sbjct: 1177 cgacgccgtcgaggccgtactccacgtggacgggccgctgccccttcagctccagctcgt 1118

             
Query: 365  a 365
            |
Sbjct: 1117 a 1117

to top

>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
             complete sequence
          Length = 160484

 Score =  208 bits (105), Expect = 9e-51
 Identities = 162/181 (89%)
 Strand = Plus / Minus

                                                                         
Query: 185   gcaggagcgtgctgccgagcgcggcgcggagggcctccgcctcgtccttggggagcaccg 244
             ||||||||||||| ||||||||||||||||||   ||  |||||||| |||||| |||| 
Sbjct: 15144 gcaggagcgtgctcccgagcgcggcgcggaggctgtcgacctcgtccctggggatcacca 15085

                                                                         
Query: 245   ccgtgacgacgcggccgcgcccgtcggcgtccggctgcaccagcacggcgccctcctcgc 304
             ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 15084 ccgtgacgacgcggccgcggccgccggcgtccggctgcaccagcacggcgccctcctcgc 15025

                                                                         
Query: 305   cgacgccgtccaggccgtactcgacgtgcgccggccgctgccccttgatctccagcccgt 364
             |||||||||| ||||||||||| |||||  | |||||||||||||| | ||||||| |||
Sbjct: 15024 cgacgccgtcgaggccgtactccacgtggacgggccgctgccccttcagctccagctcgt 14965

              
Query: 365   a 365
             |
Sbjct: 14964 a 14964

to top

>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10,
              complete sequence
          Length = 150551

 Score =  208 bits (105), Expect = 9e-51
 Identities = 162/181 (89%)
 Strand = Plus / Minus

                                                                          
Query: 185    gcaggagcgtgctgccgagcgcggcgcggagggcctccgcctcgtccttggggagcaccg 244
              ||||||||||||| ||||||||||||||||||   ||  |||||||| |||||| |||| 
Sbjct: 130437 gcaggagcgtgctcccgagcgcggcgcggaggctgtcgacctcgtccctggggatcacca 130378

                                                                          
Query: 245    ccgtgacgacgcggccgcgcccgtcggcgtccggctgcaccagcacggcgccctcctcgc 304
              ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 130377 ccgtgacgacgcggccgcggccgccggcgtccggctgcaccagcacggcgccctcctcgc 130318

                                                                          
Query: 305    cgacgccgtccaggccgtactcgacgtgcgccggccgctgccccttgatctccagcccgt 364
              |||||||||| ||||||||||| |||||  | |||||||||||||| | ||||||| |||
Sbjct: 130317 cgacgccgtcgaggccgtactccacgtggacgggccgctgccccttcagctccagctcgt 130258

               
Query: 365    a 365
              |
Sbjct: 130257 a 130257

to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  208 bits (105), Expect = 9e-51
 Identities = 162/181 (89%)
 Strand = Plus / Minus

                                                                            
Query: 185      gcaggagcgtgctgccgagcgcggcgcggagggcctccgcctcgtccttggggagcaccg 244
                ||||||||||||| ||||||||||||||||||   ||  |||||||| |||||| |||| 
Sbjct: 31033064 gcaggagcgtgctcccgagcgcggcgcggaggctgtcgacctcgtccctggggatcacca 31033005

                                                                            
Query: 245      ccgtgacgacgcggccgcgcccgtcggcgtccggctgcaccagcacggcgccctcctcgc 304
                ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 31033004 ccgtgacgacgcggccgcggccgccggcgtccggctgcaccagcacggcgccctcctcgc 31032945

                                                                            
Query: 305      cgacgccgtccaggccgtactcgacgtgcgccggccgctgccccttgatctccagcccgt 364
                |||||||||| ||||||||||| |||||  | |||||||||||||| | ||||||| |||
Sbjct: 31032944 cgacgccgtcgaggccgtactccacgtggacgggccgctgccccttcagctccagctcgt 31032885

                 
Query: 365      a 365
                |
Sbjct: 31032884 a 31032884

to top

>emb|X88779.1|ZMGLOSSY Z.mays Glossy2 locus DNA
          Length = 6343

 Score =  182 bits (92), Expect = 5e-43
 Identities = 122/132 (92%)
 Strand = Plus / Minus

                                                                        
Query: 241  accgccgtgacgacgcggccgcgcccgtcggcgtccggctgcaccagcacggcgccctcc 300
            ||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||| 
Sbjct: 4684 accgccgtgacgaggcggccgcgcccgtcggcgtcgggctgcaccagcaccgcgccctcg 4625

                                                                        
Query: 301  tcgccgacgccgtccaggccgtactcgacgtgcgccggccgctgccccttgatctccagc 360
            |||||||||||||||| ||||||||| |||||  |||| ||||||||||||||||| |||
Sbjct: 4624 tcgccgacgccgtccatgccgtactccacgtggaccgggcgctgccccttgatctcgagc 4565

                        
Query: 361  ccgtacaggtcc 372
            ||||||||||||
Sbjct: 4564 ccgtacaggtcc 4553

to top

>gb|AY109951.1| Zea mays CL2305_1 mRNA sequence
          Length = 1707

 Score =  119 bits (60), Expect = 7e-24
 Identities = 84/92 (91%)
 Strand = Plus / Minus

                                                                        
Query: 281  gcaccagcacggcgccctcctcgccgacgccgtccaggccgtactcgacgtgcgccggcc 340
            |||||||||| |||||||| |||||||||||||||| ||||||||| |||||  |||| |
Sbjct: 1350 gcaccagcaccgcgccctcgtcgccgacgccgtccatgccgtactccacgtggaccgggc 1291

                                            
Query: 341  gctgccccttgatctccagcccgtacaggtcc 372
            |||||||||||||||| |||||||||||||||
Sbjct: 1290 gctgccccttgatctcgagcccgtacaggtcc 1259

to top

>gb|AE006033.1| Caulobacter crescentus CB15 section 359 of 359 of the complete
           genome
          Length = 8050

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 200 cgagcgcggcgcggagggcctc 221
           ||||||||||||||||||||||
Sbjct: 328 cgagcgcggcgcggagggcctc 349

to top

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 300     ctcgccgacgccgtccaggccg 321
               ||||||||||||||||||||||
Sbjct: 8967852 ctcgccgacgccgtccaggccg 8967831

to top

>gb|U87804.2|CCU87804 Caulobacter crescentus 50 kDa protein (ogt) gene, partial cds; and
           GidA (gidA), GidB (gidB), ParA (parA), and ParB (parB)
           genes, complete cds
          Length = 5787

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 200 cgagcgcggcgcggagggcctc 221
           ||||||||||||||||||||||
Sbjct: 751 cgagcgcggcgcggagggcctc 730

to top

>ref|NM_187497.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 777

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 285 cagcacggcgccctcctcgcc 305
           |||||||||||||||||||||
Sbjct: 615 cagcacggcgccctcctcgcc 595

to top

>ref|XM_594248.2| PREDICTED: Bos taurus similar to CG2446-PC, isoform C (LOC516108),
           mRNA
          Length = 866

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 176 gagccgggtgcaggagcgtgc 196
           |||||||||||||||||||||
Sbjct: 547 gagccgggtgcaggagcgtgc 567

to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 285     cagcacggcgccctcctcgcc 305
               |||||||||||||||||||||
Sbjct: 8995672 cagcacggcgccctcctcgcc 8995652



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 292      gcgccctcctcgccgacgcc 311
                ||||||||||||||||||||
Sbjct: 26582678 gcgccctcctcgccgacgcc 26582697



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 199     ccgagcgcggcgcggagggc 218
               ||||||||||||||||||||
Sbjct: 2527750 ccgagcgcggcgcggagggc 2527769

to top

>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 299     cctcgccgacgccgtccaggc 319
               |||||||||||||||||||||
Sbjct: 3751991 cctcgccgacgccgtccaggc 3751971

to top

>gb|AC135209.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0071M09,
              complete sequence
          Length = 143595

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 285    cagcacggcgccctcctcgcc 305
              |||||||||||||||||||||
Sbjct: 120533 cagcacggcgccctcctcgcc 120513

to top

>gb|AC135207.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1261C08,
            complete sequence
          Length = 99910

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 285  cagcacggcgccctcctcgcc 305
            |||||||||||||||||||||
Sbjct: 2708 cagcacggcgccctcctcgcc 2688

to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 285     cagcacggcgccctcctcgcc 305
               |||||||||||||||||||||
Sbjct: 8993507 cagcacggcgccctcctcgcc 8993487



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 292      gcgccctcctcgccgacgcc 311
                ||||||||||||||||||||
Sbjct: 26674001 gcgccctcctcgccgacgcc 26674020



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 199     ccgagcgcggcgcggagggc 218
               ||||||||||||||||||||
Sbjct: 2527860 ccgagcgcggcgcggagggc 2527879

to top

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 301     tcgccgacgccgtccaggccg 321
               |||||||||||||||||||||
Sbjct: 6341044 tcgccgacgccgtccaggccg 6341024

to top

>gb|AE005111.1| Halobacterium sp. NRC-1 section 142 of 170 of the complete genome
          Length = 11925

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 301  tcgccgacgccgtccaggccg 321
            |||||||||||||||||||||
Sbjct: 3200 tcgccgacgccgtccaggccg 3220

to top

>dbj|AK106069.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H05, full
           insert sequence
          Length = 1368

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 285 cagcacggcgccctcctcgcc 305
           |||||||||||||||||||||
Sbjct: 795 cagcacggcgccctcctcgcc 775

to top

>dbj|AK061579.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-H06, full
           insert sequence
          Length = 1116

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 285 cagcacggcgccctcctcgcc 305
           |||||||||||||||||||||
Sbjct: 807 cagcacggcgccctcctcgcc 787

to top

>ref|NM_188790.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 756

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 ccgccgtgacgacgcggccg 261
           ||||||||||||||||||||
Sbjct: 691 ccgccgtgacgacgcggccg 672

to top

>ref|XM_469291.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 453

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 292 gcgccctcctcgccgacgcc 311
           ||||||||||||||||||||
Sbjct: 185 gcgccctcctcgccgacgcc 204

to top

>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 249    gacgacgcggccgcgcccgtcggc 272
              |||||||||||||||| |||||||
Sbjct: 850631 gacgacgcggccgcgcacgtcggc 850608

to top

>gb|AC133335.4| Oryza sativa chromosome 3 BAC OSJNBa0005H05 genomic sequence,
            complete sequence
          Length = 55268

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 292  gcgccctcctcgccgacgcc 311
            ||||||||||||||||||||
Sbjct: 2396 gcgccctcctcgccgacgcc 2415

to top

>ref|XM_368192.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG01052.4) partial mRNA
          Length = 2502

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 301 tcgccgacgccgtccaggcc 320
           ||||||||||||||||||||
Sbjct: 215 tcgccgacgccgtccaggcc 234

to top

>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 249     gacgacgcggccgcgcccgtcggc 272
               |||||||||||||||| |||||||
Sbjct: 1867075 gacgacgcggccgcgcacgtcggc 1867052

to top

>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome
          Length = 138390

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   cgccctcctcgccgacgccg 312
             ||||||||||||||||||||
Sbjct: 61297 cgccctcctcgccgacgccg 61278

to top

>ref|XM_752403.1| Ustilago maydis 521 hypothetical protein (UM01349.1) partial mRNA
          Length = 2571

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 177  agccgggtgcaggagcgtgc 196
            ||||||||||||||||||||
Sbjct: 1634 agccgggtgcaggagcgtgc 1615

to top

>gb|AC132427.4| Mus musculus BAC clone RP23-326N11 from chromosome 18, complete sequence
          Length = 192806

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 50     cacacagccaatcacaccacaccc 73
              ||||||||||| ||||||||||||
Sbjct: 145724 cacacagccaaccacaccacaccc 145747

to top

>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence
          Length = 182756

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 242    ccgccgtgacgacgcggccg 261
              ||||||||||||||||||||
Sbjct: 159397 ccgccgtgacgacgcggccg 159416

to top

>gb|AC142284.1| Pan troglodytes BAC clone RP43-163P11 from 7, complete sequence
          Length = 171686

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    acccaactgaagtttcaggg 176
              ||||||||||||||||||||
Sbjct: 101988 acccaactgaagtttcaggg 101969

to top

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 291     ggcgccctcctcgccgacgc 310
               ||||||||||||||||||||
Sbjct: 2733851 ggcgccctcctcgccgacgc 2733832

to top

>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 249     gacgacgcggccgcgcccgtcggc 272
               |||||||||||||||| |||||||
Sbjct: 2497848 gacgacgcggccgcgcacgtcggc 2497871

to top

>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29
          Length = 276800

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 299    cctcgccgacgccgtccaggccgt 322
              ||||| ||||||||||||||||||
Sbjct: 241013 cctcggcgacgccgtccaggccgt 241036

to top

>gb|DQ354110.1| Streptomyces violaceusniger strain DSM 4137 polyether nigericin
            biosynthetic gene cluster, complete sequence
          Length = 95700

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 197  tgccgagcgcggcgcggagggcctccgc 224
            ||||||||||||||| ||||||| ||||
Sbjct: 2489 tgccgagcgcggcgccgagggccgccgc 2462

to top

>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0067N01, from chromosome 3, complete sequence
          Length = 159636

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 199    ccgagcgcggcgcggagggc 218
              ||||||||||||||||||||
Sbjct: 142344 ccgagcgcggcgcggagggc 142325

to top

>gb|AC004886.1| Homo sapiens PAC clone RP4-784G16 from 7, complete sequence
          Length = 143364

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    acccaactgaagtttcaggg 176
              ||||||||||||||||||||
Sbjct: 123483 acccaactgaagtttcaggg 123464

to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 242     ccgccgtgacgacgcggccg 261
               ||||||||||||||||||||
Sbjct: 8195276 ccgccgtgacgacgcggccg 8195295

to top

>gb|AC079889.20| Oryza sativa chromosome 3 BAC OSJNBa0092M19 genomic sequence, complete
              sequence
          Length = 136712

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 292    gcgccctcctcgccgacgcc 311
              ||||||||||||||||||||
Sbjct: 105492 gcgccctcctcgccgacgcc 105511

to top

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 294     gccctcctcgccgacgccgt 313
               ||||||||||||||||||||
Sbjct: 3878050 gccctcctcgccgacgccgt 3878031



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 346    cccttgatctccagcccgtacagg 369
              |||| |||||||||||||||||||
Sbjct: 188704 ccctggatctccagcccgtacagg 188681

to top

>gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1172F09,
              complete sequence
          Length = 106057

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 199    ccgagcgcggcgcggagggc 218
              ||||||||||||||||||||
Sbjct: 100246 ccgagcgcggcgcggagggc 100265

to top

>dbj|AP002865.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0034C11
          Length = 139399

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 242    ccgccgtgacgacgcggccg 261
              ||||||||||||||||||||
Sbjct: 112994 ccgccgtgacgacgcggccg 113013

to top

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 254     cgcggccgcgcccgtcggcg 273
               ||||||||||||||||||||
Sbjct: 3362524 cgcggccgcgcccgtcggcg 3362543

to top

>gb|AE005110.1| Halobacterium sp. NRC-1 section 141 of 170 of the complete genome
          Length = 11525

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 198  gccgagcgcggcgcggaggg 217
            ||||||||||||||||||||
Sbjct: 7120 gccgagcgcggcgcggaggg 7139

to top

>dbj|AK111100.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-G12, full
           insert sequence
          Length = 893

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 ccgccgtgacgacgcggccg 261
           ||||||||||||||||||||
Sbjct: 700 ccgccgtgacgacgcggccg 681

to top

>emb|AJ337526.1|HSA337526 Homo sapiens genomic sequence surrounding NotI site, clone
           NL6-EE10RS
          Length = 733

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 255 gcggccgcgcccgtcggcgtccgg 278
           ||||||||||||| ||||||||||
Sbjct: 1   gcggccgcgcccgccggcgtccgg 24

to top

>dbj|AK065520.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026K01, full
           insert sequence
          Length = 2401

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 199 ccgagcgcggcgcggagggc 218
           ||||||||||||||||||||
Sbjct: 269 ccgagcgcggcgcggagggc 250

to top

>gb|AY108297.1| Zea mays PCO134827 mRNA sequence
          Length = 488

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 287 gcacggcgccctcctcgccgacgccgtc 314
           |||| |||||||||||| ||||||||||
Sbjct: 61  gcaccgcgccctcctcgtcgacgccgtc 88

to top

>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 251     cgacgcggccgcgcccgtcggcgt 274
               |||||||| |||||||||||||||
Sbjct: 1988006 cgacgcgggcgcgcccgtcggcgt 1987983


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,599,876
Number of Sequences: 3902068
Number of extensions: 2599876
Number of successful extensions: 56499
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53638
Number of HSP's gapped (non-prelim): 2857
length of query: 372
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 350
effective length of database: 17,147,199,772
effective search space: 6001519920200
effective search space used: 6001519920200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result