ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet40b03 |
|---|---|
| Clone Library Name | barley_pub |
>PORB_HORVU (Q42850) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 395 Score = 85.1 bits (209), Expect = 4e-17 Identities = 40/40 (100%), Positives = 40/40 (100%) Frame = -3 Query: 390 VYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 271 VYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA Sbjct: 356 VYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 395
>PORA_CUCSA (Q41249) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 82.0 bits (201), Expect = 3e-16 Identities = 38/40 (95%), Positives = 39/40 (97%) Frame = -3 Query: 390 VYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 271 VYWSWNKNSASFENQLS+EASD EKARKVWELSEKLVGLA Sbjct: 359 VYWSWNKNSASFENQLSQEASDAEKARKVWELSEKLVGLA 398
>POR_DAUCA (Q9SDT1) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 80.1 bits (196), Expect = 1e-15 Identities = 37/40 (92%), Positives = 39/40 (97%) Frame = -3 Query: 390 VYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 271 VYWSWNK+SASFENQLSEEASD EKARKVWE+SEKLVGLA Sbjct: 359 VYWSWNKDSASFENQLSEEASDVEKARKVWEVSEKLVGLA 398
>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 79.7 bits (195), Expect = 2e-15 Identities = 37/40 (92%), Positives = 39/40 (97%) Frame = -3 Query: 390 VYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 271 VYWSWNK+SASFENQLS+EASD EKARKVWELSEKLVGLA Sbjct: 349 VYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 388
>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 79.7 bits (195), Expect = 2e-15 Identities = 37/40 (92%), Positives = 39/40 (97%) Frame = -3 Query: 390 VYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 271 VYWSWNK+SASFENQLS+EASD EKARKVWELSEKLVGLA Sbjct: 349 VYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 388
>POR_AVESA (P15904) Protochlorophyllide reductase (EC 1.3.1.33) (PCR)| (NADPH-protochlorophyllide oxidoreductase) (POR) (Fragment) Length = 313 Score = 79.7 bits (195), Expect = 2e-15 Identities = 37/40 (92%), Positives = 39/40 (97%) Frame = -3 Query: 390 VYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 271 VYWSWNK+SASFENQLS+EASD EKARKVWELSEKLVGLA Sbjct: 274 VYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 313
>PORA_ARATH (Q42536) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 405 Score = 77.4 bits (189), Expect = 8e-15 Identities = 35/40 (87%), Positives = 38/40 (95%) Frame = -3 Query: 390 VYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 271 VYWSWNK SASFENQLS+EASD EKAR+VWE+SEKLVGLA Sbjct: 366 VYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVGLA 405
>PORB_ARATH (P21218) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 401 Score = 77.4 bits (189), Expect = 8e-15 Identities = 36/40 (90%), Positives = 37/40 (92%) Frame = -3 Query: 390 VYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 271 VYWSWN SASFENQLSEEASD EKARKVWE+SEKLVGLA Sbjct: 362 VYWSWNNASASFENQLSEEASDVEKARKVWEISEKLVGLA 401
>POR_PEA (Q01289) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 399 Score = 75.9 bits (185), Expect = 2e-14 Identities = 35/40 (87%), Positives = 37/40 (92%) Frame = -3 Query: 390 VYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 271 VYWSWN SASFENQLS+EASD EKARKVWE+SEKLVGLA Sbjct: 360 VYWSWNNASASFENQLSQEASDAEKARKVWEVSEKLVGLA 399
>PORC_ARATH (O48741) Protochlorophyllide reductase C, chloroplast precursor (EC| 1.3.1.33) (PCR C) (NADPH-protochlorophyllide oxidoreductase C) (POR C) Length = 401 Score = 75.1 bits (183), Expect = 4e-14 Identities = 33/40 (82%), Positives = 38/40 (95%) Frame = -3 Query: 390 VYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 271 VYWSWN NS+SFENQLS+EASD EKA+K+WE+SEKLVGLA Sbjct: 362 VYWSWNNNSSSFENQLSKEASDAEKAKKLWEVSEKLVGLA 401
>POR_MARPA (O80333) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 458 Score = 67.8 bits (164), Expect = 6e-12 Identities = 29/39 (74%), Positives = 36/39 (92%) Frame = -3 Query: 390 VYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGL 274 VYWSWNK+S SFEN+LSEEAS+ EKA+++WELSE+L GL Sbjct: 419 VYWSWNKDSGSFENELSEEASNPEKAKRLWELSERLSGL 457
>POR_CHLRE (Q39617) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 397 Score = 56.6 bits (135), Expect = 1e-08 Identities = 22/39 (56%), Positives = 31/39 (79%) Frame = -3 Query: 387 YWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 271 YWSW+ + SF+NQ+SEE +D KA K+W++S KLVGL+ Sbjct: 358 YWSWSSTTGSFDNQVSEEVADDSKASKLWDISAKLVGLS 396
>POR_PLEBO (O66148) Light-dependent protochlorophyllide reductase (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (LPOR) Length = 322 Score = 48.9 bits (115), Expect = 3e-06 Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 4/44 (9%) Frame = -3 Query: 390 VYWSWNKNSA----SFENQLSEEASDTEKARKVWELSEKLVGLA 271 V+WSW SF +LSE+ +D KA+++WELSEKLVGLA Sbjct: 279 VHWSWGNRQKEGRESFVQELSEKVTDDAKAKRMWELSEKLVGLA 322
>POR_SYNY3 (Q59987) Light-dependent protochlorophyllide reductase (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (LPOR) Length = 322 Score = 48.5 bits (114), Expect = 4e-06 Identities = 23/43 (53%), Positives = 33/43 (76%), Gaps = 4/43 (9%) Frame = -3 Query: 390 VYWSW-NKNSA---SFENQLSEEASDTEKARKVWELSEKLVGL 274 V+WSW N+ A +F +LSE+ SD +KA+++W+LSEKLVGL Sbjct: 279 VHWSWGNRQQAGREAFVQELSEQGSDAQKAQRMWDLSEKLVGL 321
>WWOX_MOUSE (Q91WL8) WW domain-containing oxidoreductase (EC 1.1.1.-)| Length = 414 Score = 30.8 bits (68), Expect = 0.82 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = -3 Query: 342 SEEASDTEKARKVWELSEKLV 280 SEEA E AR +WELSE+L+ Sbjct: 385 SEEAQSEETARALWELSERLI 405
>RDH14_HUMAN (Q9HBH5) Retinol dehydrogenase 14 (EC 1.1.1.-) (Alcohol| dehydrogenase PAN2) Length = 336 Score = 30.8 bits (68), Expect = 0.82 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = -3 Query: 354 ENQLSEEASDTEKARKVWELSEKLVGL 274 E +L +A D ARK+W++SE +VGL Sbjct: 308 EEELLPKAMDESVARKLWDISEVMVGL 334
>RDH13_MOUSE (Q8CEE7) Retinol dehydrogenase 13 (EC 1.1.1.-)| Length = 334 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/28 (53%), Positives = 18/28 (64%) Frame = -3 Query: 354 ENQLSEEASDTEKARKVWELSEKLVGLA 271 E S EA D E AR++W S +LVGLA Sbjct: 293 EKAPSPEAEDEEVARRLWTESARLVGLA 320
>RDH14_MOUSE (Q9ERI6) Retinol dehydrogenase 14 (EC 1.1.1.-) (Alcohol| dehydrogenase PAN2) Length = 334 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = -3 Query: 354 ENQLSEEASDTEKARKVWELSEKLVGL 274 E +L +A D ARK+W++SE +VG+ Sbjct: 306 EEELLPKAMDESVARKLWDISEVMVGI 332
>TRMU_LACAC (Q5FKU0) Probable tRNA| (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) Length = 375 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/43 (27%), Positives = 23/43 (53%) Frame = +2 Query: 224 RSGFETSPESRPVGDHASPTSFSLSSQTFLAFSVSLASSESWF 352 +SG +PE + VG+HA +++ + L + S++ WF Sbjct: 218 KSGKMVTPEGKVVGEHAGLMYYTIGQRQGLGLGSTKESTDPWF 260
>MOBA_THIFE (P22898) Protein mobA (Fragment)| Length = 409 Score = 28.9 bits (63), Expect = 3.1 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%) Frame = -2 Query: 295 QREARRARMIT-DWPALRRGLKP-RSVVIPHQVAKFCASFLKQKKRKNNCRTRFAQTARL 122 Q++ARR ++ +W L RSV+ Q A+ A K +K++ R +F L Sbjct: 275 QQKARRDELMRGNWKGKGEVLNAMRSVIAAEQAAEKAALKEKHQKQREQHRQQFRPYPDL 334 Query: 121 SMWR-----PRLSPKWLQFTSE 71 W+ P L+ +W SE Sbjct: 335 EQWQRMQKSPELAEQWRHRASE 356
>CN094_HUMAN (Q9H6D7) Protein C14orf94| Length = 363 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = -3 Query: 342 SEEASDTEKARKVWELSEKLVG 277 S+ S+T KA KVW+L+E LVG Sbjct: 187 SDADSETVKAAKVWKLAEVLVG 208
>TRMU_LACJO (Q74JW9) Probable tRNA| (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) Length = 375 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/43 (25%), Positives = 24/43 (55%) Frame = +2 Query: 224 RSGFETSPESRPVGDHASPTSFSLSSQTFLAFSVSLASSESWF 352 +SG +P+ + VG+HA +++ ++ L + S++ WF Sbjct: 218 QSGKMVTPDGKVVGEHAGLMYYTIGQRSGLGLGSTKESTDPWF 260
>YEL8_YEAST (P39943) Hypothetical 43.1 kDa protein in GAL83-YPT8 intergenic| region Length = 394 Score = 28.5 bits (62), Expect = 4.1 Identities = 32/108 (29%), Positives = 44/108 (40%) Frame = +2 Query: 35 NRSEKN*FYRLKLTCEL*PLRT*PGAPHT*PSSLCETCPTIIFPFFLLEKRSTKFRNLVR 214 N N + L P+ P PH PSSL T T I + ++ F+ L Sbjct: 132 NTGNNNGIVETQAPAILVPVINIPNDPHPIPSSLSTTSITSIASVY---PSTSPFQYL-- 186 Query: 215 NDDRSGFETSPESRPVGDHASPTSFSLSSQTFLAFSVSLASSESWFSK 358 +SGF P S P H+S +S +L L+S+ S FSK Sbjct: 187 ---KSGFPEDPASTPY-VHSSGSSLALG---------ELSSNSSIFSK 221
>YLJ2_CAEEL (P34367) Hypothetical protein C50C3.2 in chromosome III| Length = 2107 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -3 Query: 378 WNKNSASFENQLSEEASDTEKARKVWE 298 WN+ SA+F+ L A+DT KV E Sbjct: 136 WNEISATFQQMLDPTATDTSNYEKVHE 162
>RPOC1_HUPLU (Q5SCX9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 676 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/39 (41%), Positives = 19/39 (48%) Frame = -3 Query: 264 PTGRLSGEVSNPDRSSFRTKLRNFVLLFSSKKKGKIIVG 148 PTG + GEV+ PD SF +FS K G I G Sbjct: 27 PTGEIVGEVTQPDTFSFGDNRPEKDGIFSEKIFGPIQTG 65
>YJU7_YEAST (P39526) Hypothetical 229.9 kDa protein in NUC1-NCE1 intergenic| region Length = 2014 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +2 Query: 275 SPTSFSLSSQTFLAFSVSLASSESWFSKD 361 SPT SL +TF+AF ++++ ++ F D Sbjct: 1732 SPTDISLLKKTFIAFESNISNFDNMFKVD 1760
>KPB1_RAT (Q64649) Phosphorylase b kinase alpha regulatory chain, skeletal| muscle isoform (Phosphorylase kinase alpha M subunit) Length = 1242 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = +2 Query: 242 SPESRPVGDHASPTSFSLSSQTFLAFSVSLASSESWF 352 SPES+ G H P+S L S TFL+ + +++S F Sbjct: 1022 SPESQTSGGH--PSSIDLMSPTFLSPAACISASSGSF 1056
>RDH13_HUMAN (Q8NBN7) Retinol dehydrogenase 13 (EC 1.1.1.-)| Length = 331 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -3 Query: 336 EASDTEKARKVWELSEKLVGL 274 EA D E AR++W S +LVGL Sbjct: 299 EAEDEEVARRLWAESARLVGL 319
>PAP_CITUN (Q9ZWQ8) Plastid-lipid associated protein, chloroplast precursor| (CitPAP) Length = 323 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = +2 Query: 260 VGDHASPTSFSLSSQTFLAFSVSLASSESW 349 V D AS + ++SSQ L FS+S ++++SW Sbjct: 261 VQDTASSVAKTISSQPPLKFSISNSNAQSW 290 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,117,905 Number of Sequences: 219361 Number of extensions: 782596 Number of successful extensions: 2406 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2355 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2402 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
