ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet40b01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 135 1e-28
2gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare str... 135 1e-28
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
4dbj|AK100355.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
5gb|AY111561.1| Zea mays CL1285_-2 mRNA sequence 48 0.019
6emb|AL391427.9| Human DNA sequence from clone RP11-499O7 on chro... 46 0.077
7emb|AL034396.6|HS1158B12 Human DNA sequence from clone RP5-1158B... 46 0.077
8emb|AL024458.1|HS344I7 Human DNA sequence from clone RP3-344I7 o... 46 0.077
9gb|AC105426.4| Homo sapiens BAC clone RP11-794N18 from 4, comple... 44 0.30
10gb|AC139156.3| Mus musculus BAC clone RP24-115J20 from chromosom... 42 1.2
11gb|AC131796.2| Mus musculus BAC clone RP24-493L24 from chromosom... 42 1.2
12emb|CR933563.5| Wallaby DNA sequence from clone MEKBa-325O12, co... 42 1.2
13emb|AL590614.8| Mouse DNA sequence from clone RP23-9O16 on chrom... 42 1.2
14emb|BX323574.12| Zebrafish DNA sequence from clone DKEY-180F8, c... 42 1.2
15gb|AC073587.6| Homo sapiens chromosome 10 clone RP11-572P18, com... 42 1.2
16gb|AC100781.2| Homo sapiens chromosome 18, clone RP11-124E7, com... 42 1.2
17gb|AC024329.9| Homo sapiens, clone RP11-30P9, complete sequence 42 1.2
18gb|AC039057.8|AC039057 Homo sapiens chromosome 15 clone RP11-81G... 42 1.2
19gb|AC013361.6|AC013361 Homo sapiens chromosome 18, clone RP11-36... 42 1.2
20emb|AL935145.12| Zebrafish DNA sequence from clone CH211-173B9 i... 42 1.2
21ref|XM_632320.1| Dictyostelium discoideum hypothetical protein (... 40 4.7
22gb|AC134443.3| Mus musculus BAC clone RP24-107B13 from chromosom... 40 4.7
23gb|AC154457.2| Mus musculus BAC clone RP24-159K2 from chromosome... 40 4.7
24gb|AC100539.12| Mus musculus chromosome 1, clone RP23-152E3, com... 40 4.7
25emb|AL390957.14| Human DNA sequence from clone RP11-417A21 on ch... 40 4.7
26emb|AL355596.21| Human DNA sequence from clone RP11-63E9 on chro... 40 4.7
27emb|AL159155.8| Human DNA sequence from clone RP11-46I10 on chro... 40 4.7
28emb|AL139348.3| Human DNA sequence from clone RP11-151E14 on chr... 40 4.7
29emb|BX936331.6| Zebrafish DNA sequence from clone CH211-1C10 in ... 40 4.7
30gb|AC092948.6| Homo sapiens 3 BAC RP11-536F13 (Roswell Park Canc... 40 4.7
31emb|BX323006.12| Zebrafish DNA sequence from clone CH211-145H19 ... 40 4.7
32gb|AC118207.13| Mus musculus chromosome 8, clone RP24-215A12, co... 40 4.7
33emb|BX470133.27| Zebrafish DNA sequence from clone DKEY-169N7 in... 40 4.7
34gb|AC084091.5| Homo sapiens chromosome 8, clone CTD-2532E22, com... 40 4.7
35gb|AC160395.2| Mus musculus BAC clone RP23-36C19 from chromosome... 40 4.7
36gb|AC021000.9| Homo sapiens chromosome 8, clone RP11-381I2, comp... 40 4.7
37ref|XM_689281.1| PREDICTED: Danio rerio similar to tubby like pr... 40 4.7
38emb|BX511303.8| Zebrafish DNA sequence from clone DKEY-227L13 in... 40 4.7
39gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 40 4.7
40gb|AC119873.38| Mus musculus chromosome 3, clone RP24-275F18, co... 40 4.7
41emb|BX294376.10| Zebrafish DNA sequence from clone CH211-117M20 ... 40 4.7
42emb|BX890562.8| Zebrafish DNA sequence from clone CH211-222H17 i... 40 4.7
43emb|BX649594.7| Zebrafish DNA sequence from clone CH211-194N6 in... 40 4.7
44emb|AL591676.10| Zebrafish DNA sequence from clone BUSM1-259M24 ... 40 4.7
45gb|AC115976.13| Mus musculus chromosome 1, clone RP24-82A12, com... 40 4.7
46emb|CR450845.14| Zebrafish DNA sequence from clone DKEY-63K7 in ... 40 4.7
47emb|AL840627.7| Zebrafish DNA sequence from clone CH211-278B16 i... 40 4.7
48emb|CT025583.7| Mouse DNA sequence from clone RP24-68O11 on chro... 40 4.7
49gb|AC168046.7| Mus musculus chromosome 8, clone RP24-335A7, comp... 40 4.7 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  135 bits (68), Expect = 1e-28
 Identities = 89/96 (92%)
 Strand = Plus / Minus

                                                                            
Query: 259      tatgcacaaacctacctaaaacttgccctcaatgtaaccagccagaccgttgattttgaa 318
                ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 10937271 tatgcacaaacctacctaaaacttgccctcaatgtaaccggccagaccattgattttgaa 10937212

                                                    
Query: 319      aaacttttttatcacgagggccatgatagcaagagt 354
                 ||||| || ||||| |||||||| |||||||||||
Sbjct: 10937211 gaacttcttgatcacaagggccataatagcaagagt 10937176
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>gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05,
             from chromosome 3, complete sequence
          Length = 127348

 Score =  135 bits (68), Expect = 1e-28
 Identities = 89/96 (92%)
 Strand = Plus / Plus

                                                                         
Query: 259   tatgcacaaacctacctaaaacttgccctcaatgtaaccagccagaccgttgattttgaa 318
             ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 43758 tatgcacaaacctacctaaaacttgccctcaatgtaaccggccagaccattgattttgaa 43817

                                                 
Query: 319   aaacttttttatcacgagggccatgatagcaagagt 354
              ||||| || ||||| |||||||| |||||||||||
Sbjct: 43818 gaacttcttgatcacaagggccataatagcaagagt 43853
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  135 bits (68), Expect = 1e-28
 Identities = 89/96 (92%)
 Strand = Plus / Minus

                                                                            
Query: 259      tatgcacaaacctacctaaaacttgccctcaatgtaaccagccagaccgttgattttgaa 318
                ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 10935372 tatgcacaaacctacctaaaacttgccctcaatgtaaccggccagaccattgattttgaa 10935313

                                                    
Query: 319      aaacttttttatcacgagggccatgatagcaagagt 354
                 ||||| || ||||| |||||||| |||||||||||
Sbjct: 10935312 gaacttcttgatcacaagggccataatagcaagagt 10935277
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>dbj|AK100355.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083I20, full
            insert sequence
          Length = 1369

 Score =  135 bits (68), Expect = 1e-28
 Identities = 89/96 (92%)
 Strand = Plus / Minus

                                                                        
Query: 259  tatgcacaaacctacctaaaacttgccctcaatgtaaccagccagaccgttgattttgaa 318
            ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 1065 tatgcacaaacctacctaaaacttgccctcaatgtaaccggccagaccattgattttgaa 1006

                                                
Query: 319  aaacttttttatcacgagggccatgatagcaagagt 354
             ||||| || ||||| |||||||| |||||||||||
Sbjct: 1005 gaacttcttgatcacaagggccataatagcaagagt 970
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>gb|AY111561.1| Zea mays CL1285_-2 mRNA sequence
          Length = 550

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 254 caacttatgcacaaacctacctaaaacttgccctcaatgtaacc 297
           |||||||||||||| |||||  | ||||||||||||||| ||||
Sbjct: 172 caacttatgcacaatcctactcagaacttgccctcaatgaaacc 129
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>emb|AL391427.9| Human DNA sequence from clone RP11-499O7 on chromosome 10 Contains the 5'
              end of the AKR1C2 gene for aldo-keto reductase family 1
              member C2, a novel gene, the AKR1C3 gene for aldo-keto
              reductase family 1 member C3, two aldo-keto reductase
              pseudogenes and the 3' end of the gene for a novel protein
              similar to aldo-keto reductase, complete sequence
          Length = 166974

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 187    tttatataggatatagtaagcat 209
              |||||||||||||||||||||||
Sbjct: 154959 tttatataggatatagtaagcat 154981
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>emb|AL034396.6|HS1158B12 Human DNA sequence from clone RP5-1158B12 on chromosome Xp11.21-11.4
             Contains the ZXDA gene for X-linked duplicated Zinc finger
             A, a v-myc myelocytomatosis viral oncogene homolog 1 lung
             carcinoma derived (avian) (MYCL1) pseudogene, a  keratin 8
             (KRT8) pseudogene and a CpG island, complete sequence
          Length = 122884

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 308   ttgattttgaaaaacttttttat 330
             |||||||||||||||||||||||
Sbjct: 91884 ttgattttgaaaaacttttttat 91906
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>emb|AL024458.1|HS344I7 Human DNA sequence from clone RP3-344I7 on chromosome Xp11.21-11.3
             Contains a keratin 8 (KRT8) pseudogene, complete sequence
          Length = 99848

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 308   ttgattttgaaaaacttttttat 330
             |||||||||||||||||||||||
Sbjct: 94554 ttgattttgaaaaacttttttat 94532
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>gb|AC105426.4| Homo sapiens BAC clone RP11-794N18 from 4, complete sequence
          Length = 55775

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 50    cacacacgcacacatataatga 71
             ||||||||||||||||||||||
Sbjct: 24314 cacacacgcacacatataatga 24293
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>gb|AC139156.3| Mus musculus BAC clone RP24-115J20 from chromosome 18, complete sequence
          Length = 175062

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 50     cacacacgcacacatataatgaaat 74
              ||||||| |||||||||||||||||
Sbjct: 119666 cacacacacacacatataatgaaat 119690
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>gb|AC131796.2| Mus musculus BAC clone RP24-493L24 from chromosome 18, complete
             sequence
          Length = 130790

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 50    cacacacgcacacatataatgaaat 74
             ||||||| |||||||||||||||||
Sbjct: 79156 cacacacacacacatataatgaaat 79132
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>emb|CR933563.5| Wallaby DNA sequence from clone MEKBa-325O12, complete sequence
          Length = 179531

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 68    atgaaatatcatgtattccat 88
             |||||||||||||||||||||
Sbjct: 31449 atgaaatatcatgtattccat 31429
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>emb|AL590614.8| Mouse DNA sequence from clone RP23-9O16 on chromosome 13 Contains the 3'
              end of the gene for a novel protein similar to nuclear
              envelope pore membrane protein POM121, the Prss16 gene for
              thymus serine protease16, three novel genes, the genes for
              two H2a, two H2b and one H4 histone family members, a
              ribosomal protein L37A (Rpl37a) pseudogene, a novel
              pseudogene, three genes for novel vomeronasal 1 receptor H
              (V1rh) family members, the gene for a novel vomeronasal 1
              receptor I (V1ri) family member, six V1ri pseudogenes, a
              V1rh pseudogene and six CpG islands, complete sequence
          Length = 210845

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 310    gattttgaaaaacttttttat 330
              |||||||||||||||||||||
Sbjct: 195799 gattttgaaaaacttttttat 195779
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>emb|BX323574.12| Zebrafish DNA sequence from clone DKEY-180F8, complete sequence
          Length = 171724

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 309   tgattttgaaaaactttttta 329
             |||||||||||||||||||||
Sbjct: 46181 tgattttgaaaaactttttta 46201
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>gb|AC073587.6| Homo sapiens chromosome 10 clone RP11-572P18, complete sequence
          Length = 216523

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 50     cacacacgcacacatataatgaaatatca 78
              ||||||| |||||||| ||||||||||||
Sbjct: 139189 cacacacacacacatacaatgaaatatca 139161
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>gb|AC100781.2| Homo sapiens chromosome 18, clone RP11-124E7, complete sequence
          Length = 158180

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 310   gattttgaaaaacttttttat 330
             |||||||||||||||||||||
Sbjct: 30490 gattttgaaaaacttttttat 30470
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>gb|AC024329.9| Homo sapiens, clone RP11-30P9, complete sequence
          Length = 158921

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 137   aacttcatctatagctagaca 157
             |||||||||||||||||||||
Sbjct: 60844 aacttcatctatagctagaca 60864
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>gb|AC039057.8|AC039057 Homo sapiens chromosome 15 clone RP11-81G24 map 15q21.3, complete
             sequence
          Length = 174672

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 59    acacatataatgaaatatcat 79
             |||||||||||||||||||||
Sbjct: 68624 acacatataatgaaatatcat 68604
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>gb|AC013361.6|AC013361 Homo sapiens chromosome 18, clone RP11-367D23, complete sequence
          Length = 154713

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 310    gattttgaaaaacttttttat 330
              |||||||||||||||||||||
Sbjct: 144771 gattttgaaaaacttttttat 144791
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>emb|AL935145.12| Zebrafish DNA sequence from clone CH211-173B9 in linkage group 20,
              complete sequence
          Length = 157156

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 264    acaaacctacctaaaacttgc 284
              |||||||||||||||||||||
Sbjct: 140839 acaaacctacctaaaacttgc 140819
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>ref|XM_632320.1| Dictyostelium discoideum hypothetical protein (DDB0220649), partial
           mRNA
          Length = 1053

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 127 tctcactttcaacttcatct 146
           ||||||||||||||||||||
Sbjct: 784 tctcactttcaacttcatct 765
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>gb|AC134443.3| Mus musculus BAC clone RP24-107B13 from chromosome 8, complete sequence
          Length = 182604

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    cacacacgcacacatataat 69
             ||||||||||||||||||||
Sbjct: 64070 cacacacgcacacatataat 64051
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>gb|AC154457.2| Mus musculus BAC clone RP24-159K2 from chromosome 17, complete sequence
          Length = 130975

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    cacacacgcacacatataat 69
             ||||||||||||||||||||
Sbjct: 72276 cacacacgcacacatataat 72295
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>gb|AC100539.12| Mus musculus chromosome 1, clone RP23-152E3, complete sequence
          Length = 225993

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 50    cacacacgcacacatataatgaaa 73
             ||||||| ||||||||||||||||
Sbjct: 78472 cacacacacacacatataatgaaa 78495
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>emb|AL390957.14| Human DNA sequence from clone RP11-417A21 on chromosome 1 Contains a
              unprocessed pseudogene similar to regulator of G-protein
              signalling 18 (RGS18), complete sequence
          Length = 153856

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     tataatgaaatatcatgtat 83
              ||||||||||||||||||||
Sbjct: 101081 tataatgaaatatcatgtat 101100
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>emb|AL355596.21| Human DNA sequence from clone RP11-63E9 on chromosome 6, complete
             sequence
          Length = 180778

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 50    cacacacgcacacatataatgaaa 73
             ||||||| ||||||||||||||||
Sbjct: 46899 cacacacacacacatataatgaaa 46876
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>emb|AL159155.8| Human DNA sequence from clone RP11-46I10 on chromosome 13, complete
             sequence
          Length = 152890

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 53    acacgcacacatataatgaaatat 76
             |||| |||||||||||||||||||
Sbjct: 74924 acacacacacatataatgaaatat 74901
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>emb|AL139348.3| Human DNA sequence from clone RP11-151E14 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 68631

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    acatataatgaaatatcatg 80
             ||||||||||||||||||||
Sbjct: 63430 acatataatgaaatatcatg 63449
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>emb|BX936331.6| Zebrafish DNA sequence from clone CH211-1C10 in linkage group 3,
            complete sequence
          Length = 163806

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   aagccctttcatccaaaaca 32
            ||||||||||||||||||||
Sbjct: 5596 aagccctttcatccaaaaca 5577
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>gb|AC092948.6| Homo sapiens 3 BAC RP11-536F13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 144578

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    cacacatataatgaaatatc 77
             ||||||||||||||||||||
Sbjct: 48630 cacacatataatgaaatatc 48611
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>emb|BX323006.12| Zebrafish DNA sequence from clone CH211-145H19 in linkage group 15,
             complete sequence
          Length = 161776

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   attttgaaaaacttttttat 330
             ||||||||||||||||||||
Sbjct: 86734 attttgaaaaacttttttat 86715
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>gb|AC118207.13| Mus musculus chromosome 8, clone RP24-215A12, complete sequence
          Length = 187453

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    gccacacacgcacacatata 67
             ||||||||||||||||||||
Sbjct: 44658 gccacacacgcacacatata 44677
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>emb|BX470133.27| Zebrafish DNA sequence from clone DKEY-169N7 in linkage group 9,
             complete sequence
          Length = 178929

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 311   attttgaaaaacttttttat 330
             ||||||||||||||||||||
Sbjct: 21109 attttgaaaaacttttttat 21128
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>gb|AC084091.5| Homo sapiens chromosome 8, clone CTD-2532E22, complete sequence
          Length = 183486

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     cacacacgcacacatataat 69
              ||||||||||||||||||||
Sbjct: 133951 cacacacgcacacatataat 133932
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>gb|AC160395.2| Mus musculus BAC clone RP23-36C19 from chromosome 12, complete sequence
          Length = 207840

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   tggggtttatataggatata 201
             ||||||||||||||||||||
Sbjct: 66690 tggggtttatataggatata 66671
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>gb|AC021000.9| Homo sapiens chromosome 8, clone RP11-381I2, complete sequence
          Length = 192592

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    cacacacgcacacatataat 69
             ||||||||||||||||||||
Sbjct: 10542 cacacacgcacacatataat 10523
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>ref|XM_689281.1| PREDICTED: Danio rerio similar to tubby like protein 4 (LOC566016),
            mRNA
          Length = 5023

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 84   tccatcaagtgctacatacagtag 107
            ||||||||||||| ||||||||||
Sbjct: 3687 tccatcaagtgctgcatacagtag 3710
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>emb|BX511303.8| Zebrafish DNA sequence from clone DKEY-227L13 in linkage group 14,
            complete sequence
          Length = 190512

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 309  tgattttgaaaaactttttt 328
            ||||||||||||||||||||
Sbjct: 8037 tgattttgaaaaactttttt 8056
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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 313     tttgaaaaacttttttatca 332
               ||||||||||||||||||||
Sbjct: 2036191 tttgaaaaacttttttatca 2036210
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>gb|AC119873.38| Mus musculus chromosome 3, clone RP24-275F18, complete sequence
          Length = 183408

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 50    cacacacgcacacatataatgaaa 73
             ||||||| ||||||||||||||||
Sbjct: 46868 cacacacacacacatataatgaaa 46845
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>emb|BX294376.10| Zebrafish DNA sequence from clone CH211-117M20 in linkage group 5,
              complete sequence
          Length = 178400

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    tgattttgaaaaactttttt 328
              ||||||||||||||||||||
Sbjct: 163145 tgattttgaaaaactttttt 163164
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>emb|BX890562.8| Zebrafish DNA sequence from clone CH211-222H17 in linkage group 4,
             complete sequence
          Length = 195554

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 84    tccatcaagtgctacatacagtag 107
             ||||||||||||| ||||||||||
Sbjct: 49604 tccatcaagtgctgcatacagtag 49627
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>emb|BX649594.7| Zebrafish DNA sequence from clone CH211-194N6 in linkage group 18,
              complete sequence
          Length = 195263

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 50     cacacacgcacacatataatgaaa 73
              ||||||||||| ||||||||||||
Sbjct: 105586 cacacacgcactcatataatgaaa 105563
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>emb|AL591676.10| Zebrafish DNA sequence from clone BUSM1-259M24 in linkage group 3,
             complete sequence
          Length = 31713

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    aagccctttcatccaaaaca 32
             ||||||||||||||||||||
Sbjct: 17711 aagccctttcatccaaaaca 17692
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>gb|AC115976.13| Mus musculus chromosome 1, clone RP24-82A12, complete sequence
          Length = 222238

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 50  cacacacgcacacatataatgaaa 73
           ||||||| ||||||||||||||||
Sbjct: 225 cacacacacacacatataatgaaa 202
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>emb|CR450845.14| Zebrafish DNA sequence from clone DKEY-63K7 in linkage group 2,
             complete sequence
          Length = 232604

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   tgattttgaaaaactttttt 328
             ||||||||||||||||||||
Sbjct: 19105 tgattttgaaaaactttttt 19124
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>emb|AL840627.7| Zebrafish DNA sequence from clone CH211-278B16 in linkage group 17,
             complete sequence
          Length = 164375

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   tttatataggatatagtaag 206
             ||||||||||||||||||||
Sbjct: 56929 tttatataggatatagtaag 56948
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>emb|CT025583.7| Mouse DNA sequence from clone RP24-68O11 on chromosome 14, complete
              sequence
          Length = 201727

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 307    gttgattttgaaaaactttt 326
              ||||||||||||||||||||
Sbjct: 146550 gttgattttgaaaaactttt 146531
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>gb|AC168046.7| Mus musculus chromosome 8, clone RP24-335A7, complete sequence
          Length = 160659

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 50     cacacacgcacacatataat 69
              ||||||||||||||||||||
Sbjct: 112266 cacacacgcacacatataat 112285


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,711,653
Number of Sequences: 3902068
Number of extensions: 3711653
Number of successful extensions: 132506
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 132287
Number of HSP's gapped (non-prelim): 219
length of query: 357
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 335
effective length of database: 17,147,199,772
effective search space: 5744311923620
effective search space used: 5744311923620
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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