>Y623_MYCPN (P75172) Probable ATP-dependent RNA helicase MG425 homolog (EC|
           3.6.1.-) (C12_orf450)
          Length = 450

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 211 SPTGTKGAGLKA*PLVPALLQSETKGASRRRLVAPQRQ 98
           SPTGT    +   P++  LL+  +KG ++  +VAP R+
Sbjct: 47  SPTGTGKTAVFGIPVIETLLKKPSKGTTQTLVVAPTRE 84

>OSR1_MOUSE (Q9WVG7) Protein odd-skipped-related 1|
          Length = 266

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 21/63 (33%), Positives = 29/63 (46%)
 Frame = -3

Query: 229 RGFSPGSPTGTKGAGLKA*PLVPALLQSETKGASRRRLVAPQRQAL*SRFVTRTGTKDFQ 50
           RG  PGSP G  GA L    L P       K  +R RL +  ++    +F  R  TK + 
Sbjct: 136 RGEGPGSPAGGLGALLDVTKLSP------EKKPTRGRLPSKTKKEFVCKFCGRHFTKSYN 189

Query: 49  ILL 41
           +L+
Sbjct: 190 LLI 192

>OSR1_HUMAN (Q8TAX0) Protein odd-skipped-related 1|
          Length = 266

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 21/63 (33%), Positives = 29/63 (46%)
 Frame = -3

Query: 229 RGFSPGSPTGTKGAGLKA*PLVPALLQSETKGASRRRLVAPQRQAL*SRFVTRTGTKDFQ 50
           RG  PGSP G  GA L    L P       K  +R RL +  ++    +F  R  TK + 
Sbjct: 136 RGEGPGSPAGGLGALLDVTKLSP------EKKPTRGRLPSKTKKEFVCKFCGRHFTKSYN 189

Query: 49  ILL 41
           +L+
Sbjct: 190 LLI 192

>CBXXP_RALEU (Q04540) Protein cbxX, plasmid|
          Length = 317

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
 Frame = -3

Query: 238 RPVRGFSPGSP------TGTKGAGLKA*PLVPALLQSETKGASRRRLVAPQRQAL*SRFV 77
           R  RGFS G+P      TG  G G     +  A +  +     R  LVA  R  L  +++
Sbjct: 67  RAARGFSAGAPSLHMCFTGNPGTGKTTVAMRMAQILHQLGYVRRGHLVAVTRDDLVGQYI 126

Query: 76  TRTGTKDFQIL 44
             T  K  +IL
Sbjct: 127 GHTAPKTKEIL 137

>CBXXC_RALEU (P40118) Protein cbxX, chromosomal|
          Length = 317

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
 Frame = -3

Query: 238 RPVRGFSPGSP------TGTKGAGLKA*PLVPALLQSETKGASRRRLVAPQRQAL*SRFV 77
           R  RGFS G+P      TG  G G     +  A +  +     R  LVA  R  L  +++
Sbjct: 67  RAARGFSAGAPSLHMCFTGNPGTGKTTVAMRMAQILHQLGYVRRGHLVAVTRDDLVGQYI 126

Query: 76  TRTGTKDFQIL 44
             T  K  +IL
Sbjct: 127 GHTAPKTKEIL 137

>CCD45_MOUSE (Q8BVV7) Coiled-coil domain-containing protein 45|
          Length = 827

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 200 PGW*TGTKAPYRPGLKAPSPLVKENNSGESHRKRRNK 310
           PG+ T  KAPYR    +PS  V +N   E  +KR++K
Sbjct: 433 PGFSTCRKAPYRSHSLSPSS-VNKNRQLEKEKKRQHK 468

>CO8A1_HUMAN (P27658) Collagen alpha-1(VIII) chain precursor (Endothelial|
           collagen)
          Length = 744

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -1

Query: 240 PGL*GALVPVHQPGLKGRD*RPNL*SRPSYNPRLKVLHVGAS*RPRGRPFSLGSLHGPG 64
           PG+ G   P+  PG+ G    P L   P + P +    V     P G+P +LG    PG
Sbjct: 500 PGIGGPSGPIGPPGIPGPKGEPGLPGPPGF-PGIGKPGVAGLHGPPGKPGALGPQGQPG 557

>ALX4_MOUSE (O35137) Homeobox protein aristaless-like 4 (ALX-4)|
          Length = 399

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 212 TGTKAPY-RPGLKAPSPLVKENNSGESHRKRRNK 310
           TG K P  R   + PSPL K ++     +KRRN+
Sbjct: 173 TGAKGPQDRASAEIPSPLEKTDSESNKGKKRRNR 206

>CO8A1_MOUSE (Q00780) Collagen alpha-1(VIII) chain precursor|
          Length = 743

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -1

Query: 240 PGL*GALVPVHQPGLKGRD*RPNL*SRPSYNPRLKVLHVGAS*RPRGRPFSLGSLHGPG 64
           PG+ G   P+  PG+ G    P L   P + P +    V     P G+P +LG    PG
Sbjct: 500 PGIVGPSGPIGPPGIPGPKGEPGLPGPPGF-PGVGKPGVAGLHGPPGKPGALGPQGQPG 557

>CO8A1_RABIT (P14282) Collagen alpha-1(VIII) chain precursor (Endothelial|
           collagen)
          Length = 744

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -1

Query: 240 PGL*GALVPVHQPGLKGRD*RPNL*SRPSYNPRLKVLHVGAS*RPRGRPFSLGSLHGPG 64
           PG+ G   P+  PG+ G    P L   P + P +    V     P G+P +LG    PG
Sbjct: 500 PGITGPSGPIGPPGIPGPKGEPGLPGPPGF-PGVGKPGVAGLHGPPGKPGALGPQGQPG 557

>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor|
          Length = 1745

 Score = 24.6 bits (52), Expect(2) = 8.2
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +3

Query: 162  GTKG*AFSPAPLVPVGEPGLKPLTG 236
            G  G    P PL P G PGLK  TG
Sbjct: 1373 GAPGQMGPPGPLGPSGLPGLKGDTG 1397



 Score = 21.2 bits (43), Expect(2) = 8.2
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 65   PGPCNEPRLKGLP 103
            PGP  EP L G P
Sbjct: 1363 PGPVGEPGLLGAP 1375

>IF2_BACTN (Q8A2A1) Translation initiation factor IF-2|
          Length = 1040

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +2

Query: 245 KAPSPLVKENNSGESHRKRRNKGGKEKV 328
           K   P VK+NN+ ++ RK+RN+  KEKV
Sbjct: 321 KQAKPGVKDNNA-DAARKKRNRINKEKV 347


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,275,711
Number of Sequences: 219361
Number of extensions: 905912
Number of successful extensions: 2225
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2221
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)