ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet39h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LAS17_YEAST (Q12446) Proline-rich protein LAS17 31 0.93
2GSTF2_WHEAT (P30111) Glutathione S-transferase 2 (EC 2.5.1.18) (... 29 2.7
3YQ5C_CAEEL (Q09466) Putative ABC transporter C16C10.12 in chromo... 29 3.5
4NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding pr... 28 4.6
5NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding pr... 28 4.6
6HYIN1_AGRVI (Q04557) Indoleacetamide hydrolase (EC 3.5.1.-) (IAH... 28 6.0
7RPOC_STRR6 (Q8DNF1) DNA-directed RNA polymerase beta' chain (EC ... 28 7.9
8RPOC_STRPN (Q97NQ8) DNA-directed RNA polymerase beta' chain (EC ... 28 7.9
9NO75_LUPLU (Q06841) Early nodulin 75 protein (N-75) (NGM-75) (Fr... 28 7.9
10AGLU_SPIOL (O04893) Alpha-glucosidase precursor (EC 3.2.1.20) (M... 28 7.9

>LAS17_YEAST (Q12446) Proline-rich protein LAS17|
          Length = 633

 Score = 30.8 bits (68), Expect = 0.93
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +3

Query: 147 RRCRQAHTPRRDGRFENY---YSVRGRDTIHVRAHQQPPPPPHDRST 278
           ++ +  H PR +   +N    Y+    DTI    H+ PPPPP    T
Sbjct: 148 QKSQVVHGPRGESLIDNQRKRYNYEDVDTIPTTKHKAPPPPPPTAET 194



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>GSTF2_WHEAT (P30111) Glutathione S-transferase 2 (EC 2.5.1.18) (GST class-phi)|
          Length = 291

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -2

Query: 260 WWWWLLVRAYVDRVSAAHAVIVFKSAVSPRCVCLP 156
           WW  L+ R  V RV   H    FK     RC+C P
Sbjct: 202 WWEMLMARPAVQRV-CKHMPTEFKLRARTRCLCTP 235



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>YQ5C_CAEEL (Q09466) Putative ABC transporter C16C10.12 in chromosome III|
          Length = 610

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 26  NNLHTYARWIKWRAWYWYNAKG 91
           NN   Y RW++W +W  Y  +G
Sbjct: 526 NNFPVYIRWMQWTSWCRYGFEG 547



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>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 471

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 156 RQAHTPRRDGRFENYYSVRGRDTIHVRAHQQPPPPP 263
           +Q HTPR+      ++    +   H +  QQPPPPP
Sbjct: 11  KQNHTPRK------HHQHHHQQQHHQQQQQQPPPPP 40



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>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO|
           protein) (54 kDa nuclear RNA- and DNA-binding protein)
           (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55)
           (DNA-binding p52/p100 complex, 52 kDa subunit)
          Length = 471

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 156 RQAHTPRRDGRFENYYSVRGRDTIHVRAHQQPPPPP 263
           +Q HTPR+      ++    +   H +  QQPPPPP
Sbjct: 11  KQNHTPRK------HHQHHHQQQHHQQQQQQPPPPP 40



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>HYIN1_AGRVI (Q04557) Indoleacetamide hydrolase (EC 3.5.1.-) (IAH)|
           (Indole-3-acetamide hydrolase)
          Length = 462

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 147 RRCRQAHTPRRDGRFENYYSVRGRDTI 227
           RR  + + PR    +ENYYS  G D +
Sbjct: 346 RRALRCYKPRLKATYENYYSSNGLDAV 372



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>RPOC_STRR6 (Q8DNF1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1225

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 108 AVLLSLPFALYQYHARHLIQRAYVCKLLLRRDDDRI 1
           A+ L  PF + +  AR ++Q     K L+ R D+RI
Sbjct: 363 AIELFKPFVMREIVARDIVQNVKAAKRLVERGDERI 398



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>RPOC_STRPN (Q97NQ8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1225

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 108 AVLLSLPFALYQYHARHLIQRAYVCKLLLRRDDDRI 1
           A+ L  PF + +  AR ++Q     K L+ R D+RI
Sbjct: 363 AIELFKPFVMREIVARDIVQNVKAAKRLVERGDERI 398



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>NO75_LUPLU (Q06841) Early nodulin 75 protein (N-75) (NGM-75) (Fragment)|
          Length = 434

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 3/22 (13%)
 Frame = +3

Query: 225 IHVRAHQQPP---PPPHDRSTM 281
           +H  +H++PP   PPPH++S M
Sbjct: 267 VHPPSHEKPPFVYPPPHEKSPM 288



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>AGLU_SPIOL (O04893) Alpha-glucosidase precursor (EC 3.2.1.20) (Maltase)|
          Length = 903

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 240 HQQPPPPPHDRSTM 281
           HQ PPPPPH  S++
Sbjct: 109 HQPPPPPPHSLSSL 122


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,810,501
Number of Sequences: 219361
Number of extensions: 828640
Number of successful extensions: 4390
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3959
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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