>HELX_METJA (Q57742) Putative ATP-dependent helicase MJ0294 (EC 3.6.1.-)|
          Length = 841

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 4   SKKYLKGLIFKNGGSTPQYIAGRSQVIYKHEANISNLF*KKTQITTW 144
           ++K +KG IF  GG T +Y+ GR   I      +  +F +K  I  W
Sbjct: 522 AEKLMKGDIFVLGGKTYKYLGGRGNKI-----RVKEVFDEKPTIPAW 563

>HN_NDVC (P35740) Hemagglutinin-neuraminidase (EC 3.2.1.18)|
          Length = 571

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 25  LIFKNGGSTPQYIAGRSQVIYKHEANISNLF*KKTQI 135
           L++  G STP+ +AG S VI K E  +++L   K  +
Sbjct: 44  LVYSMGASTPRDLAGISTVISKTEDKVTSLLSSKQDV 80

>T240L_HUMAN (Q71F56) Thyroid hormone receptor-associated protein 2 (Thyroid|
            hormone receptor-associated protein complex 240 kDa
            component-like)
          Length = 2210

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 238  SHTDTERIAQTEPGRELDYQPLPINHIQSSTTPENMP 348
            S +  ER+   E   EL  QPL + +  S+   EN+P
Sbjct: 2074 SRSQGERLLSREAPEELKQQPLALGYFVSTAKAENLP 2110

>T240L_MOUSE (Q6JPI3) Thyroid hormone receptor-associated protein 2 (Thyroid|
            hormone receptor-associated protein complex 240 kDa
            component-like)
          Length = 2207

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 238  SHTDTERIAQTEPGRELDYQPLPINHIQSSTTPENMP 348
            S +  ER+   E   EL  QPL + +  S+   EN+P
Sbjct: 2071 SRSQGERLLSREAPEELKQQPLALGYFVSTAKAENLP 2107

>Y806_METJA (Q58216) Hypothetical peptidase MJ0806 (EC 3.4.-.-)|
          Length = 347

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 318 DVVDRQGLVVELSPWFGLRDSFGVSV 241
           D++ ++G+VV + P   L+D FGV +
Sbjct: 300 DIILKEGMVVTIEPGLYLKDKFGVRI 325

>VPP2_BOVIN (O97681) Vacuolar proton translocating ATPase 116 kDa subunit A|
           isoform 2 (V-ATPase 116-kDa isoform a2)
          Length = 854

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 158 TVLLYHPCFGTHLSIYGARKTANVSAPPTLTPNESRK 268
           T L+Y+ CF   ++++G+R   +     + +P E RK
Sbjct: 464 TGLIYNDCFSKSVNLFGSRWNVSAMYSSSHSPEEQRK 500

>MBF1_YEAST (O14467) Multiprotein-bridging factor 1 (Suppressor of frameshift|
           mutations protein 13)
          Length = 151

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 354 PRRHIFRRRA*LDVVDRQGLVVELSPWFGLRDSFGVSVGGALT 226
           PR ++ R +  ++   RQGLVV +   +G  ++ G + G  LT
Sbjct: 21  PRANVARSQGQINAARRQGLVVSVDKKYGSTNTRGDNEGQRLT 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,184,638
Number of Sequences: 219361
Number of extensions: 1088700
Number of successful extensions: 2347
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2347
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)