ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet39g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X62438.1|HVPERO H.vulgare mRNA for peroxidase 670 0.0
2emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related ... 553 e-154
3emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor ... 218 1e-53
4gb|AY857763.1| Triticum monococcum peroxidase 9 (POX9) mRNA, par... 119 7e-24
5gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, p... 96 1e-16
6ref|NM_125807.3| Arabidopsis thaliana peroxidase AT5G64110 mRNA,... 56 8e-05
7gb|AY065173.1| Arabidopsis thaliana peroxidase ATP3a homolog (At... 56 8e-05
8emb|BX830987.1|CNS0A0RL Arabidopsis thaliana Full-length cDNA Co... 56 8e-05
9gb|BT003353.1| Arabidopsis thaliana peroxidase ATP3a homolog (At... 56 8e-05
10gb|AY086554.1| Arabidopsis thaliana clone 2577 mRNA, complete se... 56 8e-05
11dbj|AB008266.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 56 8e-05
12ref|XM_474444.1| Oryza sativa (japonica cultivar-group), predic... 52 0.001
13emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207... 52 0.001
14dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
15dbj|AK104833.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
16dbj|AK102307.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
17dbj|AK060789.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
18tpe|BN000588.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 52 0.001
19emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 52 0.001
20emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4,... 52 0.001
21gb|AF019743.1|AF019743 Oryza sativa cationic peroxidase (OsCPX1)... 52 0.001
22gb|AC100751.6| Mus musculus chromosome 18, clone RP23-249P18, co... 44 0.31
23gb|AY389595.1| Hyacinthus orientalis secretory peroxidase mRNA, ... 42 1.2
24gb|AC108215.4| Homo sapiens BAC clone RP11-630A13 from 4, comple... 42 1.2
25emb|BX323878.10| Zebrafish DNA sequence from clone CH211-57E23 i... 42 1.2
26emb|BX000473.6| Zebrafish DNA sequence from clone CH211-141O9, c... 42 1.2
27ref|NM_183542.2| Oryza sativa (japonica cultivar-group), mRNA 40 4.9
28ref|XM_478764.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.9
29gb|AC107452.10| Mus musculus chromosome 15, clone RP23-236C21, c... 40 4.9
30gb|AC090889.3| Canis familiaris clone RP81-156O18, complete sequ... 40 4.9
31gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.9
32emb|BX927308.14| Zebrafish DNA sequence from clone DKEY-16M19 in... 40 4.9
33gb|AC122257.4| Mus musculus BAC clone RP23-178I11 from 17, compl... 40 4.9
34emb|BX538351.1| Cryptosporidium parvum chromosome 6, complete se... 40 4.9
35gb|AC125784.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 4.9
36emb|CR293514.9| Zebrafish DNA sequence from clone CH211-153C2 in... 40 4.9
37ref|XM_627558.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 4.9
38gb|AC161263.2| Mus musculus BAC clone RP23-296K6 from chromosome... 40 4.9
39dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
40dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
41dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
42dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
43gb|AC092596.3| Homo sapiens BAC clone RP11-100J5 from 4, complet... 40 4.9
44gb|AC084341.17| Homo sapiens chromosome 8, clone RP11-760J15, co... 40 4.9
45dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
46dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
47dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
48emb|AJ132756.1|ONO132756 Ophiostoma novo-ulmi mitovirus 6-Ld mRN... 40 4.9
49dbj|AK109551.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.9
50dbj|AK106380.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.9
51dbj|AK103623.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.9
52tpe|BN000667.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 40 4.9
53gb|AC165167.3| Mus musculus BAC clone RP23-27M6 from chromosome ... 40 4.9
54gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.9
55emb|AL713943.3|CNS07YPC Oryza sativa chromosome 12, . BAC OSJNBa... 40 4.9
56emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa... 40 4.9
57gb|AC144858.3| Mus musculus BAC clone RP24-144F3 from 8, complet... 40 4.9 
>emb|X62438.1|HVPERO H.vulgare mRNA for peroxidase
          Length = 740

 Score =  670 bits (338), Expect = 0.0
 Identities = 361/366 (98%), Gaps = 2/366 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataaaattcattctttgttgagaaaataaagtggatccagtcaaactttacgatctctc 60
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 734 aataaaattcattatttgttgagaaaataaagtggatccagtcaaactttacgacctctc 675

                                                                       
Query: 61  tcgcacacacaacggatgcatatgttttgacctctcatcttattggctagacatcacact 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tcgcacacacaacagatgcatatgttttgacctctcatcttattggctagacatcacact 615

                                                                       
Query: 121 tccacgattcaaagtttaaaacacatagactacttaacggccactcacacagtcacacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tccacgattcaaagtttaaaacacatagactacttaacggccactcacacagtcacacag 555

                                                                       
Query: 181 tactactacgttacaccgattggttatatatctctcacatgtcagcggcgatcccctcgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tactactacgttacaccgattggttatatatctctcacatgtcagcggcgatcccctcgt 495

                                                                       
Query: 241 cgccggcgacggcggtctcgatgtcctggacacgcctgttggggacggcgcagttgttcc 300
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 494 -gccggcgacggcggtctcgatgtcct-gacacgcctgttggggacggcgcagttgttcc 437

                                                                       
Query: 301 ggatctcgcccttggtgccggtgagaatgtccatgttgctcatcttggtcatggacctcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ggatctcgcccttggtgccggtgagaatgtccatgttgctcatcttggtcatggacctcg 377

                 
Query: 361 cgaact 366
           ||||||
Sbjct: 376 cgaact 371
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>emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related peroxidase
          Length = 1245

 Score =  553 bits (279), Expect = e-154
 Identities = 279/279 (100%)
 Strand = Plus / Minus

                                                                        
Query: 88   tgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacacata 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1245 tgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacacata 1186

                                                                        
Query: 148  gactacttaacggccactcacacagtcacacagtactactacgttacaccgattggttat 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1185 gactacttaacggccactcacacagtcacacagtactactacgttacaccgattggttat 1126

                                                                        
Query: 208  atatctctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcct 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 atatctctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcct 1066

                                                                        
Query: 268  ggacacgcctgttggggacggcgcagttgttccggatctcgcccttggtgccggtgagaa 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 ggacacgcctgttggggacggcgcagttgttccggatctcgcccttggtgccggtgagaa 1006

                                                   
Query: 328  tgtccatgttgctcatcttggtcatggacctcgcgaact 366
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 tgtccatgttgctcatcttggtcatggacctcgcgaact 967
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>emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor (prx gene), cultivar
            Cheyenne
          Length = 1226

 Score =  218 bits (110), Expect = 1e-53
 Identities = 143/154 (92%)
 Strand = Plus / Minus

                                                                        
Query: 213  tctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcctggaca 272
            ||||||||||| |||||||||||||||||||||| |  |||||||||||| |||||||||
Sbjct: 1107 tctcacatgtcggcggcgatcccctcgtcgccggtggtggcggtctcgatatcctggaca 1048

                                                                        
Query: 273  cgcctgttggggacggcgcagttgttccggatctcgcccttggtgccggtgagaatgtcc 332
            |||||||||||| ||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct: 1047 cgcctgttgggggcggcgcagttgttccggatctcgcccttgttgccggtgaggaggtcc 988

                                              
Query: 333  atgttgctcatcttggtcatggacctcgcgaact 366
            |||||||||||||||||||||||||  |||||||
Sbjct: 987  atgttgctcatcttggtcatggaccgggcgaact 954
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>gb|AY857763.1| Triticum monococcum peroxidase 9 (POX9) mRNA, partial cds
          Length = 760

 Score =  119 bits (60), Expect = 7e-24
 Identities = 87/96 (90%)
 Strand = Plus / Minus

                                                                       
Query: 251 ggcggtctcgatgtcctggacacgcctgttggggacggcgcagttgttccggatctcgcc 310
           ||||||||||||| ||| |||||| |||||||||||||||||||||  ||||||||||||
Sbjct: 587 ggcggtctcgatgcccttgacacggctgttggggacggcgcagttgaaccggatctcgcc 528

                                               
Query: 311 cttggtgccggtgagaatgtccatgttgctcatctt 346
           || | |||||||||| | ||||||||||||||||||
Sbjct: 527 ctggctgccggtgagcaagtccatgttgctcatctt 492
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>gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, partial cds
          Length = 1308

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                        
Query: 251  ggcggtctcgatgtcctggacacgcctgttggggacggcgcagttgttccggatctcgcc 310
            ||||||||||||| | | ||| ||||| ||||||||||||||||| | ||||||||| ||
Sbjct: 1023 ggcggtctcgatgacatcgacgcgcctattggggacggcgcagttctgccggatctcacc 964

                                                
Query: 311  cttggtgccggtgagaatgtccatgttgctcatctt 346
            || |||||| ||||| | ||||||||||||||||||
Sbjct: 963  ctgggtgccagtgagcaagtccatgttgctcatctt 928
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>ref|NM_125807.3| Arabidopsis thaliana peroxidase AT5G64110 mRNA, complete cds
          Length = 1307

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                        
Query: 339  ctcatcttggtcatggacctcgcgaact 366
            ||||||||||||||||||||||||||||
Sbjct: 1013 ctcatcttggtcatggacctcgcgaact 986
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>gb|AY065173.1| Arabidopsis thaliana peroxidase ATP3a homolog (At5g64110; MHJ24.9)
            mRNA, complete cds
          Length = 1177

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                        
Query: 339  ctcatcttggtcatggacctcgcgaact 366
            ||||||||||||||||||||||||||||
Sbjct: 1011 ctcatcttggtcatggacctcgcgaact 984
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>emb|BX830987.1|CNS0A0RL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS46ZC04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1264

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 339 ctcatcttggtcatggacctcgcgaact 366
           ||||||||||||||||||||||||||||
Sbjct: 970 ctcatcttggtcatggacctcgcgaact 943
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>gb|BT003353.1| Arabidopsis thaliana peroxidase ATP3a homolog (At5g64110) mRNA,
           complete cds
          Length = 1087

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 339 ctcatcttggtcatggacctcgcgaact 366
           ||||||||||||||||||||||||||||
Sbjct: 929 ctcatcttggtcatggacctcgcgaact 902
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>gb|AY086554.1| Arabidopsis thaliana clone 2577 mRNA, complete sequence
          Length = 1158

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                        
Query: 339  ctcatcttggtcatggacctcgcgaact 366
            ||||||||||||||||||||||||||||
Sbjct: 1013 ctcatcttggtcatggacctcgcgaact 986
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>dbj|AB008266.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHJ24
          Length = 48622

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                         
Query: 339   ctcatcttggtcatggacctcgcgaact 366
             ||||||||||||||||||||||||||||
Sbjct: 28045 ctcatcttggtcatggacctcgcgaact 28072
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>ref|XM_474444.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1041

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 286 cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 345
           ||||||||||||| |||||||||||   | |||||||||| | |||||| | ||||||||
Sbjct: 970 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 911

             
Query: 346 tg 347
           ||
Sbjct: 910 tg 909
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>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome
          Length = 124321

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                         
Query: 286   cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 345
             ||||||||||||| |||||||||||   | |||||||||| | |||||| | ||||||||
Sbjct: 90573 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 90514

               
Query: 346   tg 347
             ||
Sbjct: 90513 tg 90512
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                            
Query: 286      cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 345
                ||||||||||||| |||||||||||   | |||||||||| | |||||| | ||||||||
Sbjct: 35222888 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 35222947

                  
Query: 346      tg 347
                ||
Sbjct: 35222948 tg 35222949
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>dbj|AK104833.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-B05, full
            insert sequence
          Length = 1298

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 286  cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 345
            ||||||||||||| |||||||||||   | |||||||||| | |||||| | ||||||||
Sbjct: 1026 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 967

              
Query: 346  tg 347
            ||
Sbjct: 966  tg 965
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>dbj|AK102307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090B01, full
            insert sequence
          Length = 1487

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 286  cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 345
            ||||||||||||| |||||||||||   | |||||||||| | |||||| | ||||||||
Sbjct: 1177 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 1118

              
Query: 346  tg 347
            ||
Sbjct: 1117 tg 1116
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>dbj|AK060789.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-D09, full
            insert sequence
          Length = 1349

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 286  cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 345
            ||||||||||||| |||||||||||   | |||||||||| | |||||| | ||||||||
Sbjct: 1028 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 969

              
Query: 346  tg 347
            ||
Sbjct: 968  tg 967
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>tpe|BN000588.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx59 gene for
            class III peroxidase 59 precursor, exons 1-3
          Length = 1290

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 286  cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 345
            ||||||||||||| |||||||||||   | |||||||||| | |||||| | ||||||||
Sbjct: 1219 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 1160

              
Query: 346  tg 347
            ||
Sbjct: 1159 tg 1158
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>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete
             sequence
          Length = 82895

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                         
Query: 286   cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 345
             ||||||||||||| |||||||||||   | |||||||||| | |||||| | ||||||||
Sbjct: 66474 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 66533

               
Query: 346   tg 347
             ||
Sbjct: 66534 tg 66535
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>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24,
             complete sequence
          Length = 173770

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                         
Query: 286   cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 345
             ||||||||||||| |||||||||||   | |||||||||| | |||||| | ||||||||
Sbjct: 18733 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 18792

               
Query: 346   tg 347
             ||
Sbjct: 18793 tg 18794
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>gb|AF019743.1|AF019743 Oryza sativa cationic peroxidase (OsCPX1) mRNA, complete cds
          Length = 1333

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 286  cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 345
            ||||||||||||| |||||||||||   | |||||||||| | |||||| | ||||||||
Sbjct: 1015 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 956

              
Query: 346  tg 347
            ||
Sbjct: 955  tg 954
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>gb|AC100751.6| Mus musculus chromosome 18, clone RP23-249P18, complete sequence
          Length = 253910

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 162   cactcacacagtcacacagtactact 187
             |||||| |||||||||||||||||||
Sbjct: 35412 cactcatacagtcacacagtactact 35437
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>gb|AY389595.1| Hyacinthus orientalis secretory peroxidase mRNA, partial cds
          Length = 578

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 297 ttccggatctcgcccttggtgccggtgag 325
           |||||||||||||||||||  ||||||||
Sbjct: 266 ttccggatctcgcccttggatccggtgag 238
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>gb|AC108215.4| Homo sapiens BAC clone RP11-630A13 from 4, complete sequence
          Length = 166595

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 12    ttctttgttgagaaaataaag 32
             |||||||||||||||||||||
Sbjct: 26403 ttctttgttgagaaaataaag 26423
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>emb|BX323878.10| Zebrafish DNA sequence from clone CH211-57E23 in linkage group 12,
              complete sequence
          Length = 190541

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 14     ctttgttgagaaaataaagtggatc 38
              ||||||||| |||||||||||||||
Sbjct: 148276 ctttgttgacaaaataaagtggatc 148300
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>emb|BX000473.6| Zebrafish DNA sequence from clone CH211-141O9, complete sequence
          Length = 180366

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 14     ctttgttgagaaaataaagtggatc 38
              ||||||||| |||||||||||||||
Sbjct: 168889 ctttgttgacaaaataaagtggatc 168913
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>ref|NM_183542.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 653

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 237 tcgtcgccggcgacggcggt 256
           ||||||||||||||||||||
Sbjct: 440 tcgtcgccggcgacggcggt 459
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>ref|XM_478764.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1472

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 229 cgatcccctcgtcgccggcg 248
           ||||||||||||||||||||
Sbjct: 48  cgatcccctcgtcgccggcg 67
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>gb|AC107452.10| Mus musculus chromosome 15, clone RP23-236C21, complete sequence
          Length = 180069

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    ttgagaaaataaagtggatc 38
             ||||||||||||||||||||
Sbjct: 35824 ttgagaaaataaagtggatc 35805
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>gb|AC090889.3| Canis familiaris clone RP81-156O18, complete sequence
          Length = 146276

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     aataaaattcattctttgtt 20
             ||||||||||||||||||||
Sbjct: 37052 aataaaattcattctttgtt 37033
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 232      tcccctcgtcgccggcgacggcgg 255
                ||||||||||||||||| ||||||
Sbjct: 14162748 tcccctcgtcgccggcgccggcgg 14162771
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>emb|BX927308.14| Zebrafish DNA sequence from clone DKEY-16M19 in linkage group 22,
              complete sequence
          Length = 220546

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 43     caaactttacgatctctctcgcac 66
              |||||||||||||||||| |||||
Sbjct: 163832 caaactttacgatctctcacgcac 163855
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>gb|AC122257.4| Mus musculus BAC clone RP23-178I11 from 17, complete sequence
          Length = 222314

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     ataaaattcattctttgttg 21
             ||||||||||||||||||||
Sbjct: 72442 ataaaattcattctttgttg 72423
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>emb|BX538351.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 2/4
          Length = 307050

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 8     ttcattctttgttgagaaaataaa 31
             |||||||||||||||||| |||||
Sbjct: 26597 ttcattctttgttgagaatataaa 26620
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>gb|AC125784.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0012F18, from chromosome 3, complete sequence
          Length = 122903

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 232   tcccctcgtcgccggcgacggcgg 255
             ||||||||||||||||| ||||||
Sbjct: 37039 tcccctcgtcgccggcgccggcgg 37062
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>emb|CR293514.9| Zebrafish DNA sequence from clone CH211-153C2 in linkage group 22,
              complete sequence
          Length = 185892

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 43     caaactttacgatctctctcgcac 66
              |||||||||||||||||| |||||
Sbjct: 105158 caaactttacgatctctcacgcac 105181
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>ref|XM_627558.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd6_1970),
            partial mRNA
          Length = 7002

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 8    ttcattctttgttgagaaaataaa 31
            |||||||||||||||||| |||||
Sbjct: 1650 ttcattctttgttgagaatataaa 1627
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>gb|AC161263.2| Mus musculus BAC clone RP23-296K6 from chromosome 8, complete sequence
          Length = 199032

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 203    gttatatatctctcacatgtcagc 226
              ||||||||||| ||||||||||||
Sbjct: 173426 gttatatatctatcacatgtcagc 173449
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 290      gcagttgttccggatctcgcccttggtgccggtgag 325
                |||||| |||||||||||||||| |  |||||||||
Sbjct: 20926200 gcagttcttccggatctcgccctggtcgccggtgag 20926235
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 229      cgatcccctcgtcgccggcg 248
                ||||||||||||||||||||
Sbjct: 22867465 cgatcccctcgtcgccggcg 22867484
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 232      tcccctcgtcgccggcgacggcgg 255
                ||||||||||||||||| ||||||
Sbjct: 14157723 tcccctcgtcgccggcgccggcgg 14157746
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 237    tcgtcgccggcgacggcggt 256
              ||||||||||||||||||||
Sbjct: 631577 tcgtcgccggcgacggcggt 631596
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>gb|AC092596.3| Homo sapiens BAC clone RP11-100J5 from 4, complete sequence
          Length = 175644

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 76     atgcatatgttttgacctctcatcttattggc 107
              |||||||||||| ||||| ||||||| |||||
Sbjct: 156758 atgcatatgtttagacctgtcatctttttggc 156727
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>gb|AC084341.17| Homo sapiens chromosome 8, clone RP11-760J15, complete sequence
          Length = 141058

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    gttgagaaaataaagtggat 37
             ||||||||||||||||||||
Sbjct: 94793 gttgagaaaataaagtggat 94774
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>dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0032H19
          Length = 126434

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   tcgtcgccggcgacggcggt 256
             ||||||||||||||||||||
Sbjct: 15321 tcgtcgccggcgacggcggt 15340
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>dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0439B06
          Length = 135991

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 237    tcgtcgccggcgacggcggt 256
              ||||||||||||||||||||
Sbjct: 106182 tcgtcgccggcgacggcggt 106201
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>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1019_E02
          Length = 121607

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   cgatcccctcgtcgccggcg 248
             ||||||||||||||||||||
Sbjct: 60732 cgatcccctcgtcgccggcg 60751
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>emb|AJ132756.1|ONO132756 Ophiostoma novo-ulmi mitovirus 6-Ld mRNA for putative RNA-dependent
            RNA polymerase
          Length = 2343

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 7    attcattctttgttgagaaa 26
            ||||||||||||||||||||
Sbjct: 1547 attcattctttgttgagaaa 1566
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>dbj|AK109551.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-A03, full
            insert sequence
          Length = 1325

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 290  gcagttgttccggatctcgcccttggtgccggtgag 325
            |||||| |||||||||||||||| |  |||||||||
Sbjct: 1110 gcagttcttccggatctcgccctggtcgccggtgag 1075
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>dbj|AK106380.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-D10, full
           insert sequence
          Length = 1471

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 229 cgatcccctcgtcgccggcg 248
           ||||||||||||||||||||
Sbjct: 47  cgatcccctcgtcgccggcg 66
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>dbj|AK103623.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133N12, full
           insert sequence
          Length = 654

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 237 tcgtcgccggcgacggcggt 256
           ||||||||||||||||||||
Sbjct: 440 tcgtcgccggcgacggcggt 459
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>tpe|BN000667.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx138 gene for
            class III peroxidase 138 precursor, exons 1-4
          Length = 9140

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 290  gcagttgttccggatctcgcccttggtgccggtgag 325
            |||||| |||||||||||||||| |  |||||||||
Sbjct: 9119 gcagttcttccggatctcgccctggtcgccggtgag 9084
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>gb|AC165167.3| Mus musculus BAC clone RP23-27M6 from chromosome 17, complete sequence
          Length = 235787

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      ataaaattcattctttgttg 21
              ||||||||||||||||||||
Sbjct: 166995 ataaaattcattctttgttg 166976
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 290      gcagttgttccggatctcgcccttggtgccggtgag 325
                |||||| |||||||||||||||| |  |||||||||
Sbjct: 20852414 gcagttcttccggatctcgccctggtcgccggtgag 20852449
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>emb|AL713943.3|CNS07YPC Oryza sativa chromosome 12, . BAC OSJNBa0030G16 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 182172

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 290   gcagttgttccggatctcgcccttggtgccggtgag 325
             |||||| |||||||||||||||| |  |||||||||
Sbjct: 11690 gcagttcttccggatctcgccctggtcgccggtgag 11725
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>emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa0035E02 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 107819

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 290   gcagttgttccggatctcgcccttggtgccggtgag 325
             |||||| |||||||||||||||| |  |||||||||
Sbjct: 32795 gcagttcttccggatctcgccctggtcgccggtgag 32760
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>gb|AC144858.3| Mus musculus BAC clone RP24-144F3 from 8, complete sequence
          Length = 185158

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 203   gttatatatctctcacatgtcagc 226
             ||||||||||| ||||||||||||
Sbjct: 41286 gttatatatctatcacatgtcagc 41309


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,209,870
Number of Sequences: 3902068
Number of extensions: 3209870
Number of successful extensions: 70866
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70403
Number of HSP's gapped (non-prelim): 461
length of query: 366
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 344
effective length of database: 17,147,199,772
effective search space: 5898636721568
effective search space used: 5898636721568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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