ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet39f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF465512.1| Human coxsackievirus A15 strain G-9, complete genome 44 0.33
2gb|AF499638.1| Human coxsackievirus A15 strain G9, complete genome 44 0.33
3gb|AC161119.3| Mus musculus BAC clone RP23-32J13 from chromosome... 42 1.3
4gb|AC113126.10| Mus musculus chromosome 6, clone RP23-352D5, com... 42 1.3
5gb|AC109203.9| Mus musculus chromosome 18, clone RP23-2B18, comp... 42 1.3
6emb|BX005265.6| Zebrafish DNA sequence from clone CH211-254O16 i... 42 1.3
7emb|AL929337.9| Zebrafish DNA sequence from clone CH211-138N21 i... 42 1.3
8gb|AC162893.6| Mus musculus chromosome 7, clone RP23-419K14, com... 40 5.1
9gb|AC117186.3| Mus musculus BAC clone RP23-37O6 from 1, complete... 40 5.1
10gb|AC004448.4| Homo sapiens chromosome 17, clone CTB-187M2, comp... 40 5.1
11gb|AC025627.13| Homo sapiens chromosome 17, clone RP11-1113L8, c... 40 5.1
12ref|NM_080169.2| Drosophila melanogaster Ecdysone-inducible gene... 40 5.1
13gb|AY061140.1| Drosophila melanogaster LD11958 full length cDNA 40 5.1
14emb|BX088654.11| Zebrafish DNA sequence from clone CH211-195H6 i... 40 5.1
15gb|AC008093.4|AC008093 Drosophila melanogaster, chromosome 3R, r... 40 5.1
16gb|AC083906.23| Homo sapiens 3 BAC RP11-93K22 (Roswell Park Canc... 40 5.1
17emb|BX000987.6| Zebrafish DNA sequence from clone CH211-130P10 i... 40 5.1
18emb|BX005217.5| Zebrafish DNA sequence from clone CH211-87L3 in ... 40 5.1
19emb|Z22872.1|GMLEAPROA G.max Lea protein mRNA, complete CDS 40 5.1
20gb|AE003677.3| Drosophila melanogaster chromosome 3R, section 15... 40 5.1
21emb|AL929516.15| Zebrafish DNA sequence from clone CH211-10C20 i... 40 5.1
22gb|AC140214.3| Mus musculus BAC clone RP23-479G14 from 1, comple... 40 5.1
23emb|AL672298.4| Mouse DNA sequence from clone RP23-456D8 on chro... 40 5.1
24emb|AL772292.10| Mouse DNA sequence from clone RP23-109C16 on ch... 40 5.1

>gb|AF465512.1| Human coxsackievirus A15 strain G-9, complete genome
          Length = 7441

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 112  accaaagtggagcagggcaaat 133
            ||||||||||||||||||||||
Sbjct: 6483 accaaagtggagcagggcaaat 6504



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>gb|AF499638.1| Human coxsackievirus A15 strain G9, complete genome
          Length = 7441

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 112  accaaagtggagcagggcaaat 133
            ||||||||||||||||||||||
Sbjct: 6483 accaaagtggagcagggcaaat 6504



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>gb|AC161119.3| Mus musculus BAC clone RP23-32J13 from chromosome 18, complete sequence
          Length = 218697

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 296    gtcttgtatttcttgagccct 316
              |||||||||||||||||||||
Sbjct: 174134 gtcttgtatttcttgagccct 174154



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>gb|AC113126.10| Mus musculus chromosome 6, clone RP23-352D5, complete sequence
          Length = 176364

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 358   ctttgggaggtgaaaagcaga 378
             |||||||||||||||||||||
Sbjct: 40233 ctttgggaggtgaaaagcaga 40253



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>gb|AC109203.9| Mus musculus chromosome 18, clone RP23-2B18, complete sequence
          Length = 216783

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 296   gtcttgtatttcttgagccct 316
             |||||||||||||||||||||
Sbjct: 53047 gtcttgtatttcttgagccct 53067



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>emb|BX005265.6| Zebrafish DNA sequence from clone CH211-254O16 in linkage group 5,
              complete sequence
          Length = 162599

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 96     tgattaattaaccatgaccaa 116
              |||||||||||||||||||||
Sbjct: 146792 tgattaattaaccatgaccaa 146812



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>emb|AL929337.9| Zebrafish DNA sequence from clone CH211-138N21 in linkage group 5,
            complete sequence
          Length = 176736

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 96   tgattaattaaccatgaccaa 116
            |||||||||||||||||||||
Sbjct: 4955 tgattaattaaccatgaccaa 4935



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>gb|AC162893.6| Mus musculus chromosome 7, clone RP23-419K14, complete sequence
          Length = 197052

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 276   caacctcgtccaccctcagg 295
             ||||||||||||||||||||
Sbjct: 62706 caacctcgtccaccctcagg 62687



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>gb|AC117186.3| Mus musculus BAC clone RP23-37O6 from 1, complete sequence
          Length = 172780

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   catagtccttggttttcttc 244
             ||||||||||||||||||||
Sbjct: 13262 catagtccttggttttcttc 13243



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>gb|AC004448.4| Homo sapiens chromosome 17, clone CTB-187M2, complete sequence
          Length = 149157

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   catagtccttggttttcttc 244
             ||||||||||||||||||||
Sbjct: 25809 catagtccttggttttcttc 25790



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>gb|AC025627.13| Homo sapiens chromosome 17, clone RP11-1113L8, complete sequence
          Length = 149866

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   catagtccttggttttcttc 244
             ||||||||||||||||||||
Sbjct: 20254 catagtccttggttttcttc 20273



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>ref|NM_080169.2| Drosophila melanogaster Ecdysone-inducible gene E3 CG2723-RA (ImpE3),
            mRNA
          Length = 2236

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 3    atatttattcgagcacatttttta 26
            ||||||||| ||||||||||||||
Sbjct: 2082 atatttatttgagcacatttttta 2105



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>gb|AY061140.1| Drosophila melanogaster LD11958 full length cDNA
          Length = 2254

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 3    atatttattcgagcacatttttta 26
            ||||||||| ||||||||||||||
Sbjct: 2082 atatttatttgagcacatttttta 2105



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>emb|BX088654.11| Zebrafish DNA sequence from clone CH211-195H6 in linkage group 15,
              complete sequence
          Length = 205794

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     gattaattaaccatgaccaa 116
              ||||||||||||||||||||
Sbjct: 177389 gattaattaaccatgaccaa 177408



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>gb|AC008093.4|AC008093 Drosophila melanogaster, chromosome 3R, region 84F-84F, BAC clone
             BACR07M14, complete sequence
          Length = 181950

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 3     atatttattcgagcacatttttta 26
             ||||||||| ||||||||||||||
Sbjct: 79055 atatttatttgagcacatttttta 79032



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>gb|AC083906.23| Homo sapiens 3 BAC RP11-93K22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167875

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 364    gaggtgaaaagcagaaatgg 383
              ||||||||||||||||||||
Sbjct: 162600 gaggtgaaaagcagaaatgg 162619



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>emb|BX000987.6| Zebrafish DNA sequence from clone CH211-130P10 in linkage group 15,
              complete sequence
          Length = 152072

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 97     gattaattaaccatgaccaa 116
              ||||||||||||||||||||
Sbjct: 103289 gattaattaaccatgaccaa 103270



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>emb|BX005217.5| Zebrafish DNA sequence from clone CH211-87L3 in linkage group 15,
             complete sequence
          Length = 154452

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    gattaattaaccatgaccaa 116
             ||||||||||||||||||||
Sbjct: 82719 gattaattaaccatgaccaa 82700



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>emb|Z22872.1|GMLEAPROA G.max Lea protein mRNA, complete CDS
          Length = 1748

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 223 ggcatagtccttggttttct 242
           ||||||||||||||||||||
Sbjct: 491 ggcatagtccttggttttct 472



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 223 ggcatagtccttggttttct 242
           ||||||||||||||||||||
Sbjct: 458 ggcatagtccttggttttct 439



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>gb|AE003677.3| Drosophila melanogaster chromosome 3R, section 15 of 118 of the
             complete sequence
          Length = 228314

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 3     atatttattcgagcacatttttta 26
             ||||||||| ||||||||||||||
Sbjct: 57450 atatttatttgagcacatttttta 57427



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>emb|AL929516.15| Zebrafish DNA sequence from clone CH211-10C20 in linkage group 1,
             complete sequence
          Length = 165892

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    gattaattaaccatgaccaa 116
             ||||||||||||||||||||
Sbjct: 89624 gattaattaaccatgaccaa 89643



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>gb|AC140214.3| Mus musculus BAC clone RP23-479G14 from 1, complete sequence
          Length = 194229

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   catagtccttggttttcttc 244
             ||||||||||||||||||||
Sbjct: 83424 catagtccttggttttcttc 83405



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>emb|AL672298.4| Mouse DNA sequence from clone RP23-456D8 on chromosome X, complete
             sequence
          Length = 204050

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   aatttctgctccaagctttt 195
             ||||||||||||||||||||
Sbjct: 12657 aatttctgctccaagctttt 12638



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>emb|AL772292.10| Mouse DNA sequence from clone RP23-109C16 on chromosome 2, complete
             sequence
          Length = 201671

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 357   actttgggaggtgaaaagcagaaa 380
             |||||||| |||||||||||||||
Sbjct: 22945 actttgggtggtgaaaagcagaaa 22922


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,557,319
Number of Sequences: 3902068
Number of extensions: 4557319
Number of successful extensions: 61966
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61929
Number of HSP's gapped (non-prelim): 37
length of query: 385
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 363
effective length of database: 17,147,199,772
effective search space: 6224433517236
effective search space used: 6224433517236
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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