ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet39f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 172 5e-40
2dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic D... 172 5e-40
3dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic D... 172 5e-40
4dbj|AK106455.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 5e-40
5dbj|AK073547.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 5e-40
6dbj|AK061097.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 5e-40
7gb|AF134575.1|AF134575 Zea mays root cap-specific protein gene, ... 168 9e-39
8gb|AY110213.1| Zea mays CL1225_1 mRNA sequence 168 9e-39
9ref|NM_114976.2| Arabidopsis thaliana MUR1 (MURUS 1) AT3G51160 (... 42 1.3
10gb|BC116592.1| Danio rerio cDNA clone MGC:136571 IMAGE:7287169, ... 42 1.3
11emb|AL132980.3|ATF24M12 Arabidopsis thaliana DNA chromosome 3, B... 42 1.3
12emb|BX927196.10| Zebrafish DNA sequence from clone DKEY-121D19 i... 42 1.3
13emb|BX950173.7| Zebrafish DNA sequence from clone CH211-158I11 i... 42 1.3
14ref|XM_695089.1| PREDICTED: Danio rerio similar to checkpoint su... 42 1.3
15gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.3
16emb|BX822751.1|CNS0A4YC Arabidopsis thaliana Full-length cDNA Co... 42 1.3
17gb|AY084574.1| Arabidopsis thaliana clone 11217 mRNA, complete s... 42 1.3
18gb|AC013456.8| Homo sapiens BAC clone RP11-30M1 from 2, complete... 42 1.3
19emb|BX572629.8| Zebrafish DNA sequence from clone CH211-195L15 i... 42 1.3
20gb|AC004052.1|AC004052 Homo sapiens chromosome 4 clone B209B10 m... 42 1.3
21gb|U81805.1|ATU81805 Arabidopsis thaliana GDP-D-mannose-4,6-dehy... 42 1.3
22emb|AL928928.4| Zebrafish DNA sequence from clone CH211-127C19, ... 42 1.3
23gb|AC119947.14| Mus musculus chromosome 19, clone RP24-446G1, co... 40 5.3
24gb|AC134910.5| Mus musculus BAC clone RP23-405O11 from chromosom... 40 5.3
25gb|AC146867.3| Xenopus tropicalis clone CH216-119B15, complete s... 40 5.3
26ref|XM_387270.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 40 5.3
27gb|AC144866.2| Xenopus tropicalis clone ISB-367O10, complete seq... 40 5.3
28gb|AC144820.2| Xenopus tropicalis clone ISB-286C6, complete sequ... 40 5.3
29emb|AL049658.1|ATT17F15 Arabidopsis thaliana DNA chromosome 3, B... 40 5.3
30gb|AC145794.2| Xenopus tropicalis clone CH216-159D20, complete s... 40 5.3
31emb|AJ310343.1|SCA310343 Scyliorhinus canicula mRNA for glycopro... 40 5.3
32gb|AC098964.4| Homo sapiens chromosome 8 clone RP11-141M14 map 8... 40 5.3
33gb|AC103840.2| Homo sapiens chromosome 8, clone RP11-317N12, com... 40 5.3
34gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome 40 5.3
35dbj|AK050720.1| Mus musculus 9 days embryo whole body cDNA, RIKE... 40 5.3
36gb|AC068286.5| Homo sapiens BAC clone RP11-526G2 from 2, complet... 40 5.3
37gb|AC125421.9| Homo sapiens chromosome 17, clone CTD-2532D12, co... 40 5.3
38ref|NM_172873.1| Mus musculus RIKEN cDNA D030010E02 gene (D03001... 40 5.3
39emb|AL935161.18| Mouse DNA sequence from clone RP23-433M8 on chr... 40 5.3
40dbj|AK109980.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
41dbj|AP001793.5| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 5.3
42dbj|AB014961.1| Paracoccus sp. gyrB gene for DNA gyrase subunit ... 40 5.3
43gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome 40 5.3
44gb|AC140454.4| Mus musculus BAC clone RP24-163I14 from 1, comple... 40 5.3
45emb|AL607132.11| Mouse DNA sequence from clone RP23-97J2 on chro... 40 5.3
46dbj|AP001094.6| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 5.3 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  172 bits (87), Expect = 5e-40
 Identities = 120/131 (91%)
 Strand = Plus / Minus

                                                                           
Query: 231     tctatggctgctgcttggggtcgcggtacccagcatccacaaggaccttctccttcttgg 290
               ||||||||||||||||||| || |||||||| ||||| || |||||||||||||||||||
Sbjct: 2017964 tctatggctgctgcttgggatcacggtacccggcatcgacgaggaccttctccttcttgg 2017905

                                                                           
Query: 291     cgagctcaatgtcgttatcaaccatcatctcaaccagctgcaggaagccaaccttgggct 350
               | ||||||||||||||||||||||||||||| || |||||| |||| || ||||||||||
Sbjct: 2017904 caagctcaatgtcgttatcaaccatcatctcgacgagctgctggaacccgaccttgggct 2017845

                          
Query: 351     tccacccaagc 361
               |||||||||||
Sbjct: 2017844 tccacccaagc 2017834
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>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0548D03
          Length = 156709

 Score =  172 bits (87), Expect = 5e-40
 Identities = 120/131 (91%)
 Strand = Plus / Minus

                                                                          
Query: 231    tctatggctgctgcttggggtcgcggtacccagcatccacaaggaccttctccttcttgg 290
              ||||||||||||||||||| || |||||||| ||||| || |||||||||||||||||||
Sbjct: 146744 tctatggctgctgcttgggatcacggtacccggcatcgacgaggaccttctccttcttgg 146685

                                                                          
Query: 291    cgagctcaatgtcgttatcaaccatcatctcaaccagctgcaggaagccaaccttgggct 350
              | ||||||||||||||||||||||||||||| || |||||| |||| || ||||||||||
Sbjct: 146684 caagctcaatgtcgttatcaaccatcatctcgacgagctgctggaacccgaccttgggct 146625

                         
Query: 351    tccacccaagc 361
              |||||||||||
Sbjct: 146624 tccacccaagc 146614
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>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0041F13
          Length = 163230

 Score =  172 bits (87), Expect = 5e-40
 Identities = 120/131 (91%)
 Strand = Plus / Minus

                                                                         
Query: 231   tctatggctgctgcttggggtcgcggtacccagcatccacaaggaccttctccttcttgg 290
             ||||||||||||||||||| || |||||||| ||||| || |||||||||||||||||||
Sbjct: 38826 tctatggctgctgcttgggatcacggtacccggcatcgacgaggaccttctccttcttgg 38767

                                                                         
Query: 291   cgagctcaatgtcgttatcaaccatcatctcaaccagctgcaggaagccaaccttgggct 350
             | ||||||||||||||||||||||||||||| || |||||| |||| || ||||||||||
Sbjct: 38766 caagctcaatgtcgttatcaaccatcatctcgacgagctgctggaacccgaccttgggct 38707

                        
Query: 351   tccacccaagc 361
             |||||||||||
Sbjct: 38706 tccacccaagc 38696
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>dbj|AK106455.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-F11, full
            insert sequence
          Length = 2411

 Score =  172 bits (87), Expect = 5e-40
 Identities = 120/131 (91%)
 Strand = Plus / Minus

                                                                        
Query: 231  tctatggctgctgcttggggtcgcggtacccagcatccacaaggaccttctccttcttgg 290
            ||||||||||||||||||| || |||||||| ||||| || |||||||||||||||||||
Sbjct: 1048 tctatggctgctgcttgggatcacggtacccggcatcgacgaggaccttctccttcttgg 989

                                                                        
Query: 291  cgagctcaatgtcgttatcaaccatcatctcaaccagctgcaggaagccaaccttgggct 350
            | ||||||||||||||||||||||||||||| || |||||| |||| || ||||||||||
Sbjct: 988  caagctcaatgtcgttatcaaccatcatctcgacgagctgctggaacccgaccttgggct 929

                       
Query: 351  tccacccaagc 361
            |||||||||||
Sbjct: 928  tccacccaagc 918
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>dbj|AK073547.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043A08, full
            insert sequence
          Length = 1434

 Score =  172 bits (87), Expect = 5e-40
 Identities = 120/131 (91%)
 Strand = Plus / Minus

                                                                        
Query: 231  tctatggctgctgcttggggtcgcggtacccagcatccacaaggaccttctccttcttgg 290
            ||||||||||||||||||| || |||||||| ||||| || |||||||||||||||||||
Sbjct: 1195 tctatggctgctgcttgggatcacggtacccggcatcgacgaggaccttctccttcttgg 1136

                                                                        
Query: 291  cgagctcaatgtcgttatcaaccatcatctcaaccagctgcaggaagccaaccttgggct 350
            | ||||||||||||||||||||||||||||| || |||||| |||| || ||||||||||
Sbjct: 1135 caagctcaatgtcgttatcaaccatcatctcgacgagctgctggaacccgaccttgggct 1076

                       
Query: 351  tccacccaagc 361
            |||||||||||
Sbjct: 1075 tccacccaagc 1065
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>dbj|AK061097.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-A06, full
            insert sequence
          Length = 1574

 Score =  172 bits (87), Expect = 5e-40
 Identities = 120/131 (91%)
 Strand = Plus / Minus

                                                                        
Query: 231  tctatggctgctgcttggggtcgcggtacccagcatccacaaggaccttctccttcttgg 290
            ||||||||||||||||||| || |||||||| ||||| || |||||||||||||||||||
Sbjct: 1195 tctatggctgctgcttgggatcacggtacccggcatcgacgaggaccttctccttcttgg 1136

                                                                        
Query: 291  cgagctcaatgtcgttatcaaccatcatctcaaccagctgcaggaagccaaccttgggct 350
            | ||||||||||||||||||||||||||||| || |||||| |||| || ||||||||||
Sbjct: 1135 caagctcaatgtcgttatcaaccatcatctcgacgagctgctggaacccgaccttgggct 1076

                       
Query: 351  tccacccaagc 361
            |||||||||||
Sbjct: 1075 tccacccaagc 1065
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>gb|AF134575.1|AF134575 Zea mays root cap-specific protein gene, complete cds
          Length = 1502

 Score =  168 bits (85), Expect = 9e-39
 Identities = 115/125 (92%)
 Strand = Plus / Minus

                                                                        
Query: 231  tctatggctgctgcttggggtcgcggtacccagcatccacaaggaccttctccttcttgg 290
            ||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct: 1135 tctatggctgctgcttgggatcacggtacccagcatccaccaggaccttctccttcttgg 1076

                                                                        
Query: 291  cgagctcaatgtcgttatcaaccatcatctcaaccagctgcaggaagccaaccttgggct 350
            ||||||||||||||| ||| ||||||||||| || |||| | |||| |||||||||||||
Sbjct: 1075 cgagctcaatgtcgtgatcgaccatcatctccacgagctcctggaacccaaccttgggct 1016

                 
Query: 351  tccac 355
            |||||
Sbjct: 1015 tccac 1011
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>gb|AY110213.1| Zea mays CL1225_1 mRNA sequence
          Length = 1270

 Score =  168 bits (85), Expect = 9e-39
 Identities = 115/125 (92%)
 Strand = Plus / Minus

                                                                        
Query: 231  tctatggctgctgcttggggtcgcggtacccagcatccacaaggaccttctccttcttgg 290
            ||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct: 1135 tctatggctgctgcttgggatcacggtacccagcatccaccaggaccttctccttcttgg 1076

                                                                        
Query: 291  cgagctcaatgtcgttatcaaccatcatctcaaccagctgcaggaagccaaccttgggct 350
            ||||||||||||||| ||| ||||||||||| || |||| | |||| |||||||||||||
Sbjct: 1075 cgagctcaatgtcgtgatcgaccatcatctccacgagctcctggaacccaaccttgggct 1016

                 
Query: 351  tccac 355
            |||||
Sbjct: 1015 tccac 1011
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>ref|NM_114976.2| Arabidopsis thaliana MUR1 (MURUS 1) AT3G51160 (MUR1) mRNA, complete
            cds
          Length = 1418

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 260  ccagcatccacaaggaccttctccttcttggcgagctcaatgtcgttatcaaccatcatc 319
            |||||||| ||||| || |||||| |||| || |||||||  || | |||||||||||||
Sbjct: 1168 ccagcatcaacaagcactttctccctcttagcaagctcaagatcttcatcaaccatcatc 1109

             
Query: 320  t 320
            |
Sbjct: 1108 t 1108
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>gb|BC116592.1| Danio rerio cDNA clone MGC:136571 IMAGE:7287169, complete cds
          Length = 2685

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 89  caaactgcaaacctccttatt 109
           |||||||||||||||||||||
Sbjct: 527 caaactgcaaacctccttatt 547
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>emb|AL132980.3|ATF24M12 Arabidopsis thaliana DNA chromosome 3, BAC clone F24M12
          Length = 129516

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                         
Query: 260   ccagcatccacaaggaccttctccttcttggcgagctcaatgtcgttatcaaccatcatc 319
             |||||||| ||||| || |||||| |||| || |||||||  || | |||||||||||||
Sbjct: 66585 ccagcatcaacaagcactttctccctcttagcaagctcaagatcttcatcaaccatcatc 66644

              
Query: 320   t 320
             |
Sbjct: 66645 t 66645
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>emb|BX927196.10| Zebrafish DNA sequence from clone DKEY-121D19 in linkage group 17,
             complete sequence
          Length = 84911

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 89    caaactgcaaacctccttatt 109
             |||||||||||||||||||||
Sbjct: 81792 caaactgcaaacctccttatt 81772
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>emb|BX950173.7| Zebrafish DNA sequence from clone CH211-158I11 in linkage group 19,
            complete sequence
          Length = 68628

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 313  catcatctcaaccagctgcag 333
            |||||||||||||||||||||
Sbjct: 1760 catcatctcaaccagctgcag 1740
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>ref|XM_695089.1| PREDICTED: Danio rerio similar to checkpoint suppressor 1
           (LOC571491), mRNA
          Length = 755

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 89  caaactgcaaacctccttatt 109
           |||||||||||||||||||||
Sbjct: 508 caaactgcaaacctccttatt 528
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 233     tatggctgctgcttggggtcg 253
               |||||||||||||||||||||
Sbjct: 2292169 tatggctgctgcttggggtcg 2292149
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>emb|BX822751.1|CNS0A4YC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB61ZF11 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1369

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 260  ccagcatccacaaggaccttctccttcttggcgagctcaatgtcgttatcaaccatcatc 319
            |||||||| ||||| || |||||| |||| || |||||||  || | |||||||||||||
Sbjct: 1146 ccagcatcaacaagcactttctccctcttagcaagctcaagatcttcatcaaccatcatc 1087

             
Query: 320  t 320
            |
Sbjct: 1086 t 1086
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>gb|AY084574.1| Arabidopsis thaliana clone 11217 mRNA, complete sequence
          Length = 1416

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 260  ccagcatccacaaggaccttctccttcttggcgagctcaatgtcgttatcaaccatcatc 319
            |||||||| ||||| || |||||| |||| || |||||||  || | |||||||||||||
Sbjct: 1168 ccagcatcaacaagcactttctccctcttagcaagctcaagatcttcatcaaccatcatc 1109

             
Query: 320  t 320
            |
Sbjct: 1108 t 1108
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>gb|AC013456.8| Homo sapiens BAC clone RP11-30M1 from 2, complete sequence
          Length = 42683

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 20    tcaactgactgattcattcat 40
             |||||||||||||||||||||
Sbjct: 35604 tcaactgactgattcattcat 35584
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>emb|BX572629.8| Zebrafish DNA sequence from clone CH211-195L15 in linkage group 19,
              complete sequence
          Length = 170971

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 313    catcatctcaaccagctgcag 333
              |||||||||||||||||||||
Sbjct: 170731 catcatctcaaccagctgcag 170711
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>gb|AC004052.1|AC004052 Homo sapiens chromosome 4 clone B209B10 map 4q25, complete sequence
          Length = 156490

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 15   tggtatcaactgactgattca 35
            |||||||||||||||||||||
Sbjct: 9524 tggtatcaactgactgattca 9504
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>gb|U81805.1|ATU81805 Arabidopsis thaliana GDP-D-mannose-4,6-dehydratase (MUR1) mRNA,
            complete cds
          Length = 1413

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 260  ccagcatccacaaggaccttctccttcttggcgagctcaatgtcgttatcaaccatcatc 319
            |||||||| ||||| || |||||| |||| || |||||||  || | |||||||||||||
Sbjct: 1142 ccagcatcaacaagcactttctccctcttagcaagctcaagatcttcatcaaccatcatc 1083

             
Query: 320  t 320
            |
Sbjct: 1082 t 1082
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>emb|AL928928.4| Zebrafish DNA sequence from clone CH211-127C19, complete sequence
          Length = 163161

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 313    catcatctcaaccagctgcag 333
              |||||||||||||||||||||
Sbjct: 145751 catcatctcaaccagctgcag 145771
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>gb|AC119947.14| Mus musculus chromosome 19, clone RP24-446G1, complete sequence
          Length = 142066

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   gccacactgtatcagcttct 178
             ||||||||||||||||||||
Sbjct: 26894 gccacactgtatcagcttct 26913
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>gb|AC134910.5| Mus musculus BAC clone RP23-405O11 from chromosome 5, complete sequence
          Length = 200538

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 257    tacccagcatccacaaggaccttc 280
              |||||||||| |||||||||||||
Sbjct: 115187 tacccagcatgcacaaggaccttc 115210
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>gb|AC146867.3| Xenopus tropicalis clone CH216-119B15, complete sequence
          Length = 157383

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 197  caggctccattttaatcaaa 216
            ||||||||||||||||||||
Sbjct: 7155 caggctccattttaatcaaa 7174
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>ref|XM_387270.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07094.1)
            partial mRNA
          Length = 2067

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 281  tccttcttggcgagctcaat 300
            ||||||||||||||||||||
Sbjct: 1322 tccttcttggcgagctcaat 1303
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>gb|AC144866.2| Xenopus tropicalis clone ISB-367O10, complete sequence
          Length = 57987

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   caggctccattttaatcaaa 216
             ||||||||||||||||||||
Sbjct: 37614 caggctccattttaatcaaa 37633
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>gb|AC144820.2| Xenopus tropicalis clone ISB-286C6, complete sequence
          Length = 103933

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   caggctccattttaatcaaa 216
             ||||||||||||||||||||
Sbjct: 38603 caggctccattttaatcaaa 38622
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>emb|AL049658.1|ATT17F15 Arabidopsis thaliana DNA chromosome 3, BAC clone T17F15
          Length = 107950

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   gacaaacaacaataacttga 139
             ||||||||||||||||||||
Sbjct: 12979 gacaaacaacaataacttga 12998
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>gb|AC145794.2| Xenopus tropicalis clone CH216-159D20, complete sequence
          Length = 159085

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 197   caggctccattttaatcaaa 216
             ||||||||||||||||||||
Sbjct: 64741 caggctccattttaatcaaa 64722
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>emb|AJ310343.1|SCA310343 Scyliorhinus canicula mRNA for glycoprotein hormone alpha subunit
          Length = 620

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 313 catcatctcaaccagctgca 332
           ||||||||||||||||||||
Sbjct: 47  catcatctcaaccagctgca 66
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>gb|AC098964.4| Homo sapiens chromosome 8 clone RP11-141M14 map 8p21-p11, complete
             sequence
          Length = 151646

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    tatcaactgactgattcatt 37
             ||||||||||||||||||||
Sbjct: 96862 tatcaactgactgattcatt 96881
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>gb|AC103840.2| Homo sapiens chromosome 8, clone RP11-317N12, complete sequence
          Length = 172361

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    tatcaactgactgattcatt 37
             ||||||||||||||||||||
Sbjct: 39474 tatcaactgactgattcatt 39493
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>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 305     ttatcaaccatcatctcaac 324
               ||||||||||||||||||||
Sbjct: 1064615 ttatcaaccatcatctcaac 1064596
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>dbj|AK050720.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:D030010E02 product:hypothetical
           CUB domain containing protein, full insert sequence
          Length = 2613

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 150 actgcaatggccacactgtatcag 173
           |||||||||||||| |||||||||
Sbjct: 605 actgcaatggccaccctgtatcag 582
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>gb|AC068286.5| Homo sapiens BAC clone RP11-526G2 from 2, complete sequence
          Length = 137631

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   ataccgactctatggctgct 242
             ||||||||||||||||||||
Sbjct: 97778 ataccgactctatggctgct 97797
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>gb|AC125421.9| Homo sapiens chromosome 17, clone CTD-2532D12, complete sequence
          Length = 111128

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 342   ccttgggcttccacccaagc 361
             ||||||||||||||||||||
Sbjct: 15793 ccttgggcttccacccaagc 15774
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>ref|NM_172873.1| Mus musculus RIKEN cDNA D030010E02 gene (D030010E02Rik), mRNA
          Length = 2613

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 150 actgcaatggccacactgtatcag 173
           |||||||||||||| |||||||||
Sbjct: 605 actgcaatggccaccctgtatcag 582
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>emb|AL935161.18| Mouse DNA sequence from clone RP23-433M8 on chromosome 2, complete
            sequence
          Length = 144625

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 128  acaataacttgagccaactt 147
            ||||||||||||||||||||
Sbjct: 9604 acaataacttgagccaactt 9623
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>dbj|AK109980.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-D07, full
            insert sequence
          Length = 3396

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 276  ccttctccttcttggcgagc 295
            ||||||||||||||||||||
Sbjct: 1698 ccttctccttcttggcgagc 1679
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>dbj|AP001793.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-661O13, complete
            sequence
          Length = 195743

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 347  ggcttccacccaagcactctcctc 370
            ||||||||||||||| ||||||||
Sbjct: 5998 ggcttccacccaagctctctcctc 5975
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>dbj|AB014961.1| Paracoccus sp. gyrB gene for DNA gyrase subunit B, partial cds,
           clone:gy10323.icb
          Length = 1402

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 gaccttctccttcttggcga 293
           ||||||||||||||||||||
Sbjct: 841 gaccttctccttcttggcga 822
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>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 305    ttatcaaccatcatctcaac 324
              ||||||||||||||||||||
Sbjct: 491973 ttatcaaccatcatctcaac 491954
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>gb|AC140454.4| Mus musculus BAC clone RP24-163I14 from 1, complete sequence
          Length = 171533

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     aaacctccttatttctaccc 116
              ||||||||||||||||||||
Sbjct: 146249 aaacctccttatttctaccc 146268
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>emb|AL607132.11| Mouse DNA sequence from clone RP23-97J2 on chromosome 4, complete
              sequence
          Length = 183108

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 150    actgcaatggccacactgtatcag 173
              |||||||||||||| |||||||||
Sbjct: 179456 actgcaatggccaccctgtatcag 179433
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>dbj|AP001094.6| Homo sapiens genomic DNA, chromosome 18 clone:RP11-789C17, complete
              sequences
          Length = 181310

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 347    ggcttccacccaagcactctcctc 370
              ||||||||||||||| ||||||||
Sbjct: 173611 ggcttccacccaagctctctcctc 173588


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,541,125
Number of Sequences: 3902068
Number of extensions: 3541125
Number of successful extensions: 68974
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68826
Number of HSP's gapped (non-prelim): 148
length of query: 394
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 372
effective length of database: 17,147,199,772
effective search space: 6378758315184
effective search space used: 6378758315184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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