>emb|X76911.1|HVEMIP H.vulgare mRNA for transmembrane protein
          Length = 1225

 Score =  398 bits (201), Expect = e-108
 Identities = 213/217 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1    aacaactttgctggatttgcacaacaacgagcagtactacacaacaactgagcactgatg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1199 aacaactttgctggatttgcacaacaacgagcagtactacacaacaactgagcactgatg 1140

                                                                        
Query: 61   agattacatacaagtcctctgtctgggttcaggtgaatacagagcaagagcaagagtagc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1139 agattacatacaagtcctctgtctgggttcaggtgaatacagagcaagagcaagagtagt 1080

                                                                        
Query: 121  acatcaaacttggaagacaaattggaattccacggtaacacggacgatgggaagagaggg 180
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1079 acatcaaacttggaagacaaattggaattccacggtaacagggacgatgggaagagaggg 1020

                                                 
Query: 181  ccgcccccatcaaaaagaaattcactcaaaacacgca 217
            |||||||||||| ||||||||||||||| ||||||||
Sbjct: 1019 ccgcccccatcagaaagaaattcactcagaacacgca 983

>emb|AL772318.6| Mouse DNA sequence from clone RP23-77I17 on chromosome 4, complete
              sequence
          Length = 249534

 Score = 46.1 bits (23), Expect = 0.045
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 78     tctgtctgggttcaggtgaatacagag 104
              ||||||||||| |||||||||||||||
Sbjct: 225070 tctgtctgggtacaggtgaatacagag 225044

>emb|AL138758.7| Human DNA sequence from clone RP5-824O18 on chromosome 1p11.2-13.1
             Contains the 3' end of the ABCD3 gene for ATP-binding
             cassette sub-family D (ALD) member 3, the F3 gene for
             coagulation factor III (thromboplastin, tissue factor), a
             novel gene and a CpG island, complete sequence
          Length = 108205

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 192   aaaaagaaattcactcaaaac 212
             |||||||||||||||||||||
Sbjct: 83524 aaaaagaaattcactcaaaac 83504

>gb|AC093117.2| Homo sapiens chromosome 1 clone RP11-86H7, complete sequence
          Length = 200426

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 192   aaaaagaaattcactcaaaac 212
             |||||||||||||||||||||
Sbjct: 62382 aaaaagaaattcactcaaaac 62362

>gb|AC153823.5| Mus musculus 10 BAC RP23-11M21 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 210101

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 121   acatcaaacttggaagacaaa 141
             |||||||||||||||||||||
Sbjct: 24157 acatcaaacttggaagacaaa 24177

>gb|AC153943.3| Mus musculus 10 BAC RP24-408O23 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 171960

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 121    acatcaaacttggaagacaaa 141
              |||||||||||||||||||||
Sbjct: 121183 acatcaaacttggaagacaaa 121203

>ref|XM_521983.1| PREDICTED: Pan troglodytes similar to expressed sequence AI841794
           (LOC466584), mRNA
          Length = 1269

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 9   tgctggatttgcacaacaac 28
           ||||||||||||||||||||
Sbjct: 407 tgctggatttgcacaacaac 426

>ref|NM_001005210.1| Homo sapiens leucine rich repeat containing 55 (LRRC55), mRNA
          Length = 3797

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 9   tgctggatttgcacaacaac 28
           ||||||||||||||||||||
Sbjct: 554 tgctggatttgcacaacaac 573

>gb|AC152940.2| Mus musculus BAC clone RP23-264B6 from chromosome 15, complete sequence
          Length = 224704

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   aaaaagaaattcactcaaaa 211
             ||||||||||||||||||||
Sbjct: 94982 aaaaagaaattcactcaaaa 94963

>gb|AC126028.4| Mus musculus BAC clone RP24-542M6 from chromosome 15, complete sequence
          Length = 168344

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   aaaaagaaattcactcaaaa 211
             ||||||||||||||||||||
Sbjct: 12511 aaaaagaaattcactcaaaa 12530

>gb|AC007528.5| Homo sapiens 12 BAC RP11-473N11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 188451

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    cagagcaagagcaagagtag 119
              ||||||||||||||||||||
Sbjct: 155822 cagagcaagagcaagagtag 155841

>gb|AC124743.5| Mus musculus BAC clone RP23-219C1 from 1, complete sequence
          Length = 220167

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    aaaaagaaattcactcaaaa 211
              ||||||||||||||||||||
Sbjct: 188243 aaaaagaaattcactcaaaa 188224

>emb|AL161722.9| Human DNA sequence from clone RP11-497J7 on chromosome X Contains a
              melanoma antigen family B 4 pseudogene and a nuclear
              transcription factor Y, gamma (NFYC) pseudogene, complete
              sequence
          Length = 154594

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    aaaaagaaattcactcaaaa 211
              ||||||||||||||||||||
Sbjct: 104634 aaaaagaaattcactcaaaa 104653

>emb|AL117377.18|HSJ1037B9 Human DNA sequence from clone RP5-1037B9 on chromosome 20p12.1-13
             Contains STSs, GSSs and a putative CpG island, complete
             sequence
          Length = 82183

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   cacatcaaacttggaagaca 139
             ||||||||||||||||||||
Sbjct: 72891 cacatcaaacttggaagaca 72872

>gb|AC163448.2| Mus musculus chromosome 1, clone RP24-327O21, complete sequence
          Length = 150247

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   aaaaagaaattcactcaaaa 211
             ||||||||||||||||||||
Sbjct: 67631 aaaaagaaattcactcaaaa 67650

>emb|CR354559.6| Zebrafish DNA sequence from clone CH211-210F24 in linkage group 17,
             complete sequence
          Length = 54604

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   aaagaaattcactcaaaaca 213
             ||||||||||||||||||||
Sbjct: 16871 aaagaaattcactcaaaaca 16890

>emb|CR847868.9| Zebrafish DNA sequence from clone DKEYP-99G4 in linkage group 8,
             complete sequence
          Length = 147399

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   aaaagaaattcactcaaaac 212
             ||||||||||||||||||||
Sbjct: 93607 aaaagaaattcactcaaaac 93588

>emb|BX548158.10| Zebrafish DNA sequence from clone CH211-106G4 in linkage group 8,
             complete sequence
          Length = 190936

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   aaaagaaattcactcaaaac 212
             ||||||||||||||||||||
Sbjct: 14723 aaaagaaattcactcaaaac 14742

>dbj|AK127591.1| Homo sapiens cDNA FLJ45686 fis, clone FCBBF3012443
          Length = 3797

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 9   tgctggatttgcacaacaac 28
           ||||||||||||||||||||
Sbjct: 554 tgctggatttgcacaacaac 573

>gb|AC016493.14| Homo sapiens chromosome 18, clone RP11-58G13, complete sequence
          Length = 163936

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    ttggaagacaaattggaatt 149
              ||||||||||||||||||||
Sbjct: 159892 ttggaagacaaattggaatt 159873

>gb|AC023577.6| Homo sapiens chromosome 18, clone RP11-645D5, complete sequence
          Length = 166503

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   ttggaagacaaattggaatt 149
             ||||||||||||||||||||
Sbjct: 50150 ttggaagacaaattggaatt 50131

>dbj|AP001786.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-176J24, complete
             sequences
          Length = 171744

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     tgctggatttgcacaacaac 28
             ||||||||||||||||||||
Sbjct: 92890 tgctggatttgcacaacaac 92909

>gb|DQ151348.1| Petromyzon marinus clone T.D8 variable lymphocyte receptor
           diversity region (VLR) mRNA, partial cds
          Length = 534

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 9   tgctggatttgcacaacaac 28
           ||||||||||||||||||||
Sbjct: 263 tgctggatttgcacaacaac 282


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,574,614
Number of Sequences: 3902068
Number of extensions: 2574614
Number of successful extensions: 194959
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 194897
Number of HSP's gapped (non-prelim): 62
length of query: 217
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 195
effective length of database: 17,147,199,772
effective search space: 3343703955540
effective search space used: 3343703955540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)