>T240L_MOUSE (Q6JPI3) Thyroid hormone receptor-associated protein 2 (Thyroid|
            hormone receptor-associated protein complex 240 kDa
            component-like)
          Length = 2207

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 225  SHTDTERIAQTEPGRELDYQPLPINHIQSSTTPENMPARRHTTSTFPRAFCSGPLY 392
            S +  ER+   E   EL  QPL + +  S+   EN+P  +   S+ P+A    PL+
Sbjct: 2071 SRSQGERLLSREAPEELKQQPLALGYFVSTAKAENLP--QWFWSSCPQARNQCPLF 2124

>RPB1_PLAFD (P14248) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6)
          Length = 2452

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 92  FKSLLRKNTNNHLEYTTVLYYCSILVSATTYLSMERE 202
           F S L+K TNN LEY      CS ++++   L   RE
Sbjct: 805 FLSALQKVTNNWLEYVGFTVSCSDIIASNKVLGKVRE 841

>T240L_HUMAN (Q71F56) Thyroid hormone receptor-associated protein 2 (Thyroid|
            hormone receptor-associated protein complex 240 kDa
            component-like)
          Length = 2210

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 225  SHTDTERIAQTEPGRELDYQPLPINHIQSSTTPENMPARRHTTSTFPRAFCSGPLY 392
            S +  ER+   E   EL  QPL + +  S+   EN+P  +   S+ P+A    PL+
Sbjct: 2074 SRSQGERLLSREAPEELKQQPLALGYFVSTAKAENLP--QWFWSSCPQAQNQCPLF 2127

>XERD_CHLTE (Q8KET0) Tyrosine recombinase xerD|
          Length = 304

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
 Frame = +3

Query: 237 TERIAQTEPGRELDYQPLPINHIQSSTTPENM------PARRHTTSTF 362
           TER+A   P   + +QP    ++ S  T E M      P +RH TSTF
Sbjct: 92  TERLATMNPAENI-HQPKLARYLPSVLTIEEMATLLDAPLKRHPTSTF 138

>Y964_SYNY3 (P72855) Hypothetical protein slr0964|
          Length = 308

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 391 YKGPEQNALGNVLVVCLLAGIFSGV 317
           Y+G     + +VLV CLLAG+  GV
Sbjct: 44  YRGISAGVVASVLVGCLLAGVLQGV 68

>WSC2_YEAST (P53832) Cell wall integrity and stress response component 2|
           precursor
          Length = 503

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = +3

Query: 147 CTTVASLFRQPPIYLWSAKDRQR*RASHTDTERIAQTEPGRELDYQPLPINHIQSSTTPE 326
           C TVA L      ++W    ++R  + H D E   Q +P    D    P+    +S+T  
Sbjct: 332 CGTVALLALALFFFVWK---KRRQSSQHVDLEETKQYQPYSLGDADANPVIPPSASSTNW 388

Query: 327 NMPARRHT 350
           ++P+R +T
Sbjct: 389 HIPSRNNT 396

>DRD2_CANFA (Q9GJU1) D(2) dopamine receptor (Dopamine D2 receptor)|
          Length = 443

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 219 RASHTDTERIAQTEPGRELDYQPLPINHIQSSTTPENMPARRHTTSTFP 365
           RA   + E ++ T P     Y P+P +H Q  T P+      H+T+  P
Sbjct: 275 RAQELEMEMLSSTSPPERTRYSPIPPSHHQ-LTLPDPSHHGLHSTADSP 322

>SWR1_ASHGO (Q759G7) Helicase SWR1 (EC 3.6.1.-)|
          Length = 1486

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +2

Query: 89   HFKSLLRKNTNNHLEYTTVLYYCSILVSATTYLSMERERPPTLARLPH*HRTNRA-DRTR 265
            H   L+ KN N H   T V   C+ L       +ME     + ARL    + + A ++ R
Sbjct: 994  HLNQLVLKNLNKHALDTVVNLQCTNLAFTQNDFNMETHYADSCARLQCVRQFSEAVEKLR 1053

Query: 266  ERARLP 283
            + A LP
Sbjct: 1054 KDASLP 1059

>NHS_HUMAN (Q6T4R5) Nance-Horan syndrome protein (Congenital cataracts and|
            dental anomalies protein)
          Length = 1630

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 351  TSTFPRAFCSGPLYPFGASAR 413
            TS+FP AF SGPL P G+  +
Sbjct: 1012 TSSFPTAFFSGPLSPGGSKRK 1032


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,975,229
Number of Sequences: 219361
Number of extensions: 1170468
Number of successful extensions: 2893
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2893
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)