ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet39d04 |
|---|---|
| Clone Library Name | barley_pub |
>PSAF_HORVU (P13192) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 235 Score = 110 bits (275), Expect = 8e-25 Identities = 55/56 (98%), Positives = 55/56 (98%) Frame = -3 Query: 398 SYLIAVSGEKKPAMGEIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADIGY 231 SYLIAVSGEKKPAM EIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADIGY Sbjct: 180 SYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADIGY 235
>PSAF_SPIOL (P12355) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 231 Score = 69.3 bits (168), Expect = 2e-12 Identities = 33/48 (68%), Positives = 39/48 (81%) Frame = -3 Query: 398 SYLIAVSGEKKPAMGEIIIDVELAARIIPRGFIWPVAAYRELINGDLV 255 SYLIA+ EKKP EIIIDV LA+ ++ RGF WPVAAYREL+NG+LV Sbjct: 180 SYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELV 227
>PSAF_FLATR (P46486) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 232 Score = 67.8 bits (164), Expect = 6e-12 Identities = 31/48 (64%), Positives = 38/48 (79%) Frame = -3 Query: 398 SYLIAVSGEKKPAMGEIIIDVELAARIIPRGFIWPVAAYRELINGDLV 255 SYLIA+ EKKP EIIIDV LA +++ RGF WPVAAYRE +NG+L+ Sbjct: 181 SYLIAIRDEKKPTQKEIIIDVPLATKLLFRGFSWPVAAYREYLNGELI 228
>PSAF_ODOSI (P49483) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 55.5 bits (132), Expect = 3e-08 Identities = 26/53 (49%), Positives = 37/53 (69%) Frame = -3 Query: 395 YLIAVSGEKKPAMGEIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 237 YL AVS K P EIII+V LA +I+ G+IWP++A++E I+ DLV D ++ Sbjct: 128 YLRAVSTTKNPTESEIIINVPLALKIMTTGYIWPISAWQEFISNDLVALDEEV 180
>PSAF_PORPU (P51193) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 52.0 bits (123), Expect = 3e-07 Identities = 23/53 (43%), Positives = 35/53 (66%) Frame = -3 Query: 395 YLIAVSGEKKPAMGEIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 237 YL++V+ KP EII+DV LA + + GF WP+AA++E +G L+ + DI Sbjct: 128 YLLSVAKTSKPTEKEIILDVPLAVKFMSSGFAWPLAAWQEFSSGQLIAPNDDI 180
>PSAF_SYNY3 (P29256) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 51.2 bits (121), Expect = 6e-07 Identities = 24/54 (44%), Positives = 36/54 (66%) Frame = -3 Query: 398 SYLIAVSGEKKPAMGEIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 237 SYLI + K P M E++I+V LA + + GF+WP+AA E +G LV+ D++I Sbjct: 107 SYLIEIRESKNPEMQEVVINVPLAIKKMLGGFLWPLAAVGEYTSGKLVMKDSEI 160
>PSAF_CHLRE (P12356) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) (P21 protein) Length = 227 Score = 50.8 bits (120), Expect = 8e-07 Identities = 27/53 (50%), Positives = 35/53 (66%) Frame = -3 Query: 395 YLIAVSGEKKPAMGEIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 237 YLIAV GE KP EIIIDV LA ++ +G WP+AA +EL G L+ + +I Sbjct: 170 YLIAVKGEAKPTDKEIIIDVPLATKLAWQGAGWPLAAVQELQRGTLLEKEENI 222
>PSAF_SYNEN (P0A402) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 48.9 bits (115), Expect = 3e-06 Identities = 25/54 (46%), Positives = 34/54 (62%) Frame = -3 Query: 398 SYLIAVSGEKKPAMGEIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 237 +YLIAV + EIIIDV LA + + GF WP+AA +EL +G+L D +I Sbjct: 106 AYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASGELTAKDNEI 159
>PSAF_SYNEL (P0A401) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 48.9 bits (115), Expect = 3e-06 Identities = 25/54 (46%), Positives = 34/54 (62%) Frame = -3 Query: 398 SYLIAVSGEKKPAMGEIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 237 +YLIAV + EIIIDV LA + + GF WP+AA +EL +G+L D +I Sbjct: 106 AYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASGELTAKDNEI 159
>PSAF_CYAPA (P48115) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 186 Score = 47.4 bits (111), Expect = 8e-06 Identities = 22/54 (40%), Positives = 33/54 (61%) Frame = -3 Query: 398 SYLIAVSGEKKPAMGEIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 237 SYL AV+ EIIID+ +A + + +GF+WP+AA +E +G L D +I Sbjct: 128 SYLQAVAASDNSTEKEIIIDIPVALQSVSKGFVWPLAALQEFSSGKLTARDEEI 181
>PSAF_GUITH (O78457) Photosystem I reaction center subunit III (PSI-F)| Length = 183 Score = 47.0 bits (110), Expect = 1e-05 Identities = 22/54 (40%), Positives = 33/54 (61%) Frame = -3 Query: 398 SYLIAVSGEKKPAMGEIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 237 +Y+ S KP EIIIDV +A I G+IWP AA++E +G+L+ + +I Sbjct: 125 NYVQFASQTDKPTEKEIIIDVPVALSFISTGYIWPFAAFKEFTSGNLIAKEDEI 178
>PSAF_ANAVT (P31091) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 46.6 bits (109), Expect = 1e-05 Identities = 22/54 (40%), Positives = 33/54 (61%) Frame = -3 Query: 398 SYLIAVSGEKKPAMGEIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 237 +YL A+ + EI +D+ LA II GF WP AA +EL++G+L D++I Sbjct: 106 AYLQAIKKDSDTEQKEIQLDLGLALPIIATGFAWPAAAVKELLSGELTAKDSEI 159
>PSAF_SYNP6 (P31083) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 159 Score = 46.6 bits (109), Expect = 1e-05 Identities = 23/54 (42%), Positives = 33/54 (61%) Frame = -3 Query: 398 SYLIAVSGEKKPAMGEIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 237 SYL A+ +K A EI+IDV LA + GF WP+AA++E +G L+ +I Sbjct: 101 SYLQAIKSDKDAAGKEIVIDVPLAVKFSLTGFAWPLAAFQEFSSGKLLAKADEI 154
>PSAF_ANASP (P58564) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 45.8 bits (107), Expect = 2e-05 Identities = 21/54 (38%), Positives = 33/54 (61%) Frame = -3 Query: 398 SYLIAVSGEKKPAMGEIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 237 +YL A+ + EI +D+ +A II GF WP AA +EL++G+L D++I Sbjct: 106 AYLQAIKKDSDTEQKEIQLDLGIALPIIATGFAWPAAAVKELLSGELTAKDSEI 159
>PSAF_PROMA (Q9X7I4) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 183 Score = 40.8 bits (94), Expect = 8e-04 Identities = 23/53 (43%), Positives = 30/53 (56%) Frame = -3 Query: 395 YLIAVSGEKKPAMGEIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 237 YL A K PA EIIID LA + + +G WPV A ++ +GDL D +I Sbjct: 125 YLRASKKTKNPAENEIIIDFALARQCLIKGAAWPVEANKQGRSGDLREKDENI 177
>PSAF_CYACA (Q9TLW6) Photosystem I reaction center subunit III (PSI-F)| Length = 187 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/44 (40%), Positives = 26/44 (59%) Frame = -3 Query: 368 KPAMGEIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 237 KP EIIID+ A + + GF WP+ A +E NG L+ + +I Sbjct: 139 KPNENEIIIDLPRALKYMFSGFAWPILALKEFKNGSLLASNDEI 182
>PSAF_MASLA (O31127) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 37.0 bits (84), Expect = 0.011 Identities = 16/39 (41%), Positives = 25/39 (64%) Frame = -3 Query: 353 EIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 237 EI I++ +A I+ GF WP AA +E ++G+L D +I Sbjct: 122 EIQIELPIALPIMLSGFAWPAAAIKEFLSGELTAKDEEI 160
>PSAF_GLOVI (Q7NH05) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 181 Score = 35.8 bits (81), Expect = 0.025 Identities = 19/43 (44%), Positives = 25/43 (58%) Frame = -3 Query: 374 EKKPAMGEIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 246 E K EIIID+ A + + G IWPV A ELI+G + V + Sbjct: 131 ESKGPEDEIIIDLPKAIKCLLLGLIWPVQAIPELISGKIRVPE 173
>RDRP_MRNV (Q6XNL5) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA| replicase) Length = 1045 Score = 30.8 bits (68), Expect = 0.81 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -3 Query: 200 SRSQVRWAAEDEGLWCRSVWAWCRS**DHGEMEPLLYLRN 81 S +QV + + G W VW WC D+GE LYL+N Sbjct: 217 SDNQVDYRVDGGGRWQHKVWNWC----DYGE---FLYLKN 249
>MADCA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule 1 precursor| (MAdCAM-1) (hMAdCAM-1) Length = 406 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +2 Query: 74 GFSFLNTREVPFLHDPISSYTKPTQIDTTSPHPP 175 G + + +P LH P T P DTTSP PP Sbjct: 212 GLELSHRQAIPVLHSP----TSPEPPDTTSPEPP 241
>YHBP_ECOL6 (Q8FD95) UPF0306 protein yhbP| Length = 140 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 227 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 141 L A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECO57 (Q8XA94) UPF0306 protein yhbP| Length = 147 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 227 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 141 L A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>RHO_NEIGO (Q06447) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 419 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/56 (30%), Positives = 25/56 (44%) Frame = +2 Query: 2 IVLNNLNNGKIHTCEERTQ*LYKIGFSFLNTREVPFLHDPISSYTKPTQIDTTSPH 169 IV + G+ TC + + GF FL + + +L P Y PTQI + H Sbjct: 38 IVRQMMKKGEGFTCSGTLE-ILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLH 92
>YHBP_SHIFL (P67763) UPF0306 protein yhbP| Length = 147 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 227 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 141 L A+ WLA + V W + EG LWC + + Sbjct: 4 LIAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECOLI (P67762) UPF0306 protein yhbP| Length = 147 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 227 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 141 L A+ WLA + V W + EG LWC + + Sbjct: 4 LIAISRWLAKQHVVTWCVQQEGELWCANAF 33
>AGI_URTDI (P11218) Lectin/endochitinase precursor (EC 3.2.1.14) (Agglutinin)| (UDA) Length = 372 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = -3 Query: 161 LWCRSVWAWCRS**DHGEMEP 99 LWC S+W WC G+ EP Sbjct: 38 LWCCSIWGWC------GDSEP 52
>PPZ1_YEAST (P26570) Serine/threonine-protein phosphatase PP-Z1 (EC 3.1.3.16)| Length = 691 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +1 Query: 133 HQAHTDRHHKPSSSAAH 183 H +HT+R+H PSSS +H Sbjct: 79 HSSHTNRYHFPSSSHSH 95
>PEPQ_PYRFU (P81535) Xaa-Pro dipeptidase (EC 3.4.13.9) (X-Pro dipeptidase)| (Proline dipeptidase) (Prolidase) (Imidodipeptidase) Length = 348 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/50 (38%), Positives = 28/50 (56%) Frame = -3 Query: 395 YLIAVSGEKKPAMGEIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 246 YL+ ++G +KPA II +A +P G VA+ + + GDLVV D Sbjct: 166 YLMKMNGAEKPAFDTIIASGHRSA--LPHG----VASDKRIERGDLVVID 209
>YHBP_SALTY (P60822) UPF0306 protein yhbP| Length = 147 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = -3 Query: 227 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 141 L A+ WLA + V W EG LWC + + Sbjct: 4 LTAIGRWLAKQHVVTWCVHHEGELWCANAF 33
>YHBP_SALTI (P60821) UPF0306 protein yhbP| Length = 147 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = -3 Query: 227 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 141 L A+ WLA + V W EG LWC + + Sbjct: 4 LTAIGRWLAKQHVVTWCVHHEGELWCANAF 33
>CATE_MYCAV (P50979) Catalase HPII (EC 1.11.1.6)| Length = 706 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Frame = +3 Query: 36 TRVKREHNSYTRLGS---VS*IQERFHFSMILSAPTPSPHRSTPQA 164 T+ E +Y +G+ V IQ+ F +++ A P PH PQA Sbjct: 137 TKFYTEQGNYDLVGNNFPVFFIQDGIKFPVLVHAVKPEPHNEIPQA 182
>DNMBP_HUMAN (Q6XZF7) Dynamin-binding protein (Scaffold protein Tuba)| Length = 1577 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/30 (50%), Positives = 17/30 (56%) Frame = +3 Query: 135 PSPHRSTPQALILRCPSDLGPTSQPRTHGS 224 PS S+P RCPSD TSQPR+ S Sbjct: 1424 PSNSESSPS----RCPSDPDSTSQPRSGDS 1449
>PEPQ_PYRHO (O58885) Xaa-Pro dipeptidase (EC 3.4.13.9) (X-Pro dipeptidase)| (Proline dipeptidase) (Prolidase) (Imidodipeptidase) Length = 351 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/50 (38%), Positives = 28/50 (56%) Frame = -3 Query: 395 YLIAVSGEKKPAMGEIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 246 YL+ ++G +KPA II +A +P G VA+ + + GDLVV D Sbjct: 169 YLMKMNGAEKPAFDTIIASGYRSA--LPHG----VASDKRIERGDLVVID 212 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,449,662 Number of Sequences: 219361 Number of extensions: 928787 Number of successful extensions: 2634 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 2468 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2631 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
