ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet39d04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U08135.1|HVU08135 Hordeum vulgare photosystem-I PSI-F subunit... 769 0.0
2gb|AY103687.1| Zea mays PCO106710 mRNA sequence 228 1e-56
3ref|NM_184976.1| Oryza sativa (japonica cultivar-group), mRNA 224 2e-55
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 224 2e-55
5gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 geno... 224 2e-55
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 224 2e-55
7dbj|AK069791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 2e-55
8dbj|AK060493.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 2e-55
9dbj|AK059890.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 2e-55
10gb|AF093634.1|AF093634 Oryza sativa photosystem-1 F subunit prec... 224 2e-55
11ref|NM_197599.1| Oryza sativa (japonica cultivar-group) mucin-li... 44 0.34
12emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; s... 44 0.34
13emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; s... 44 0.34
14dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.34
15dbj|AK106264.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.34
16gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 42 1.4
17gb|AC026866.8| Homo sapiens BAC clone RP11-420P20 from 7, comple... 42 1.4
18gb|AC140949.1| Pan troglodytes BAC clone RP43-168N2 from 7, comp... 42 1.4
19emb|AL513210.32| Human DNA sequence from clone RP11-35J6 on chro... 42 1.4
20gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 geno... 42 1.4
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
22dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
23gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 42 1.4
24gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
25emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4,... 42 1.4
26ref|XM_471550.1| Oryza sativa (japonica cultivar-group), predic... 40 5.3
27ref|NM_197655.1| Oryza sativa (japonica cultivar-group) hypothet... 40 5.3
28gb|AC094571.8| Rattus norvegicus 20 BAC CH230-4L21 (Children's H... 40 5.3
29gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 5.3
30gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 5.3
31gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 5.3
32emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chr... 40 5.3
33emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.3
34emb|BX640425.1| Bordetella parapertussis strain 12822, complete ... 40 5.3
35emb|BX640411.1| Bordetella pertussis strain Tohama I, complete g... 40 5.3
36emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete ... 40 5.3
37emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4,... 40 5.3
38gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3
39gb|AC087698.5| Homo sapiens chromosome 8, clone RP11-25K19, comp... 40 5.3
40gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, co... 40 5.3
41gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 geno... 40 5.3
42gb|AC090152.4| Homo sapiens chromosome 8, clone RP11-554M1, comp... 40 5.3
43gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 40 5.3
44gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.3
45dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
46emb|AL513406.1|CNS07EFT Human DNA sequence chromosome 8 of Homo ... 40 5.3
47emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 5.3
48gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 5.3
49gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3 
>gb|U08135.1|HVU08135 Hordeum vulgare photosystem-I PSI-F subunit precursor mRNA,
           complete cds
          Length = 990

 Score =  769 bits (388), Expect = 0.0
 Identities = 397/400 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcgttctcaacaatttgaacaatggtaaaatacacacgtgtgaagagagaacacaata 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 984 aatcgttctcaacaatttgaacaatggtaaaatacacacatgtgaagagagaacacaata 925

                                                                       
Query: 61  gttatacaagattgggttcagtttcttaaatacaagagaggttccatttctccatgatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 gttatacaagattgggttcagtttcttaaatacaagagaggttccatttctccatgatcc 865

                                                                       
Query: 121 tatcagctcctacaccaagcccacacagatcgacaccacaagccctcatcctccgctgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 tatcagctcctacaccaagcccacacagatcgacaccacaagccctcatcctccgctgcc 805

                                                                       
Query: 181 catctgacttgggaccgactagccaaccacgcacgcatggcagctagttagtagccgatg 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 804 catctgacttgggaccgactagccaaccacgcacgcatggcagctacttagtagccgatg 745

                                                                       
Query: 241 tcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcggcgacgggccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcggcgacgggccag 685

                                                                       
Query: 301 atgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatgatctcccccatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 684 atgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatgatctccctcatg 625

                                                   
Query: 361 gcgggcttcttctcgccgctgacggcgatgaggtagctgc 400
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcgggcttcttctcgccgctgacggcgatgaggtagctgc 585
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>gb|AY103687.1| Zea mays PCO106710 mRNA sequence
          Length = 1242

 Score =  228 bits (115), Expect = 1e-56
 Identities = 164/179 (91%), Gaps = 1/179 (0%)
 Strand = Plus / Minus

                                                                       
Query: 220 gcagctagttagtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcg 279
           ||||||||| |||||||||||||   |||||||||||||||||| |||||||||||||||
Sbjct: 802 gcagctagt-agtagccgatgtccttgtcgtcgacgacgaggtctccgttgatgagctcg 744

                                                                       
Query: 280 cggtatgcggcgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacg 339
           ||||| || ||||||||||||||||| |||||||||| ||  | || |||||||||||||
Sbjct: 743 cggtaggccgcgacgggccagatgaaccccctggggaggaggcgggtggcgagctcgacg 684

                                                                      
Query: 340 tcgatgatgatctcccccatggcgggcttcttctcgccgctgacggcgatgaggtagct 398
           |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 683 tcgatgatgatctccctcatggcgggcttcttctcgccgctgatggcgatgaggtagct 625
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>ref|NM_184976.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1038

 Score =  224 bits (113), Expect = 2e-55
 Identities = 155/169 (91%)
 Strand = Plus / Minus

                                                                       
Query: 230 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 289
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 778 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 719

                                                                       
Query: 290 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 349
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 718 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 659

                                                            
Query: 350 tctcccccatggcgggcttcttctcgccgctgacggcgatgaggtagct 398
           |||||| |||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 658 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagct 610



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 82  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 136
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 921 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 867
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  224 bits (113), Expect = 2e-55
 Identities = 155/169 (91%)
 Strand = Plus / Plus

                                                                            
Query: 230      agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 289
                ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 31969474 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 31969533

                                                                            
Query: 290      cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 349
                |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 31969534 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 31969593

                                                                 
Query: 350      tctcccccatggcgggcttcttctcgccgctgacggcgatgaggtagct 398
                |||||| |||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 31969594 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagct 31969642



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                       
Query: 82       tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 136
                |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 31969219 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 31969273
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>gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete
             sequence
          Length = 144306

 Score =  224 bits (113), Expect = 2e-55
 Identities = 155/169 (91%)
 Strand = Plus / Plus

                                                                         
Query: 230   agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 289
             ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 61426 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 61485

                                                                         
Query: 290   cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 349
             |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 61486 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 61545

                                                              
Query: 350   tctcccccatggcgggcttcttctcgccgctgacggcgatgaggtagct 398
             |||||| |||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 61546 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagct 61594



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                    
Query: 82    tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 136
             |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 61171 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 61225
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  224 bits (113), Expect = 2e-55
 Identities = 155/169 (91%)
 Strand = Plus / Plus

                                                                            
Query: 230      agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 289
                ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 32059986 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 32060045

                                                                            
Query: 290      cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 349
                |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 32060046 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 32060105

                                                                 
Query: 350      tctcccccatggcgggcttcttctcgccgctgacggcgatgaggtagct 398
                |||||| |||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 32060106 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagct 32060154



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                       
Query: 82       tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 136
                |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 32059731 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 32059785
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>dbj|AK069791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031N02, full
           insert sequence
          Length = 967

 Score =  224 bits (113), Expect = 2e-55
 Identities = 155/169 (91%)
 Strand = Plus / Minus

                                                                       
Query: 230 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 289
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 742 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 683

                                                                       
Query: 290 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 349
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 682 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 623

                                                            
Query: 350 tctcccccatggcgggcttcttctcgccgctgacggcgatgaggtagct 398
           |||||| |||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 622 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagct 574



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 82  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 136
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 890 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 836
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>dbj|AK060493.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D02, full
           insert sequence
          Length = 997

 Score =  224 bits (113), Expect = 2e-55
 Identities = 155/169 (91%)
 Strand = Plus / Minus

                                                                       
Query: 230 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 289
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 777 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 718

                                                                       
Query: 290 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 349
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 717 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 658

                                                            
Query: 350 tctcccccatggcgggcttcttctcgccgctgacggcgatgaggtagct 398
           |||||| |||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 657 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagct 609



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 82  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 136
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 920 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 866
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>dbj|AK059890.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-C12, full
           insert sequence
          Length = 990

 Score =  224 bits (113), Expect = 2e-55
 Identities = 155/169 (91%)
 Strand = Plus / Minus

                                                                       
Query: 230 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 289
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 765 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 706

                                                                       
Query: 290 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 349
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 705 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 646

                                                            
Query: 350 tctcccccatggcgggcttcttctcgccgctgacggcgatgaggtagct 398
           |||||| |||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 645 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagct 597



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 82  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 136
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 913 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 859
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>gb|AF093634.1|AF093634 Oryza sativa photosystem-1 F subunit precursor (PSI-F) mRNA,
           complete cds
          Length = 996

 Score =  224 bits (113), Expect = 2e-55
 Identities = 155/169 (91%)
 Strand = Plus / Minus

                                                                       
Query: 230 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 289
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 758 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 699

                                                                       
Query: 290 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 349
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 698 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 639

                                                            
Query: 350 tctcccccatggcgggcttcttctcgccgctgacggcgatgaggtagct 398
           |||||| |||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 638 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagct 590



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 82  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 136
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 901 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 847
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>ref|NM_197599.1| Oryza sativa (japonica cultivar-group) mucin-like protein
           (OSJNBb0015I11.17), mRNA
          Length = 1110

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 235 ccgatgtcggcgtcgtcgacgacgaggtcgccgt 268
           ||||||||||||||| ||||||| ||| ||||||
Sbjct: 386 ccgatgtcggcgtcggcgacgacaaggccgccgt 353
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>emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; segment 2/2
          Length = 178073

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 234   gccgatgtcggcgtcgtcgacgacgaggtcgccg 267
             ||||||||| ||| ||||||||||||| ||||||
Sbjct: 38032 gccgatgtccgcgccgtcgacgacgagctcgccg 38065
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>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2
          Length = 178000

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 234    gccgatgtcggcgtcgtcgacgacgaggtcgccg 267
              ||||||||| ||| ||||||||||||| ||||||
Sbjct: 127590 gccgatgtccgcgccgtcgacgacgagctcgccg 127557
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 240     gtcggcgtcgtcgacgacgagg 261
               ||||||||||||||||||||||
Sbjct: 1139192 gtcggcgtcgtcgacgacgagg 1139213
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>dbj|AK106264.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F10, full
           insert sequence
          Length = 1488

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 235 ccgatgtcggcgtcgtcgacgacgaggtcgccgt 268
           ||||||||||||||| ||||||| ||| ||||||
Sbjct: 62  ccgatgtcggcgtcggcgacgacaaggccgccgt 29
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 242     cggcgtcgtcgacgacgaggt 262
               |||||||||||||||||||||
Sbjct: 1949449 cggcgtcgtcgacgacgaggt 1949429
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>gb|AC026866.8| Homo sapiens BAC clone RP11-420P20 from 7, complete sequence
          Length = 179438

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 14    aatttgaacaatggtaaaata 34
             |||||||||||||||||||||
Sbjct: 47352 aatttgaacaatggtaaaata 47372
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>gb|AC140949.1| Pan troglodytes BAC clone RP43-168N2 from 7, complete sequence
          Length = 193777

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 14     aatttgaacaatggtaaaata 34
              |||||||||||||||||||||
Sbjct: 170684 aatttgaacaatggtaaaata 170704
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>emb|AL513210.32| Human DNA sequence from clone RP11-35J6 on chromosome 6 Contains six
             CpG islands, complete sequence
          Length = 157572

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 24    atggtaaaatacacacgtgtgaagagaga 52
             |||||| ||| ||||||||||||||||||
Sbjct: 82334 atggtacaatccacacgtgtgaagagaga 82306
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>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete
              sequence
          Length = 138824

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 236    cgatgtcggcgtcgtcgacgacgaggtcgccgt 268
              |||||||||||||| ||||||| ||| ||||||
Sbjct: 107077 cgatgtcggcgtcggcgacgacaaggccgccgt 107045
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 234      gccgatgtcggcgtcgtcgacgacg 258
                |||||||||| ||||||||||||||
Sbjct: 18403096 gccgatgtcgtcgtcgtcgacgacg 18403072



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 242      cggcgtcgtcgacgacgagg 261
                ||||||||||||||||||||
Sbjct: 12249186 cggcgtcgtcgacgacgagg 12249167
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 236      cgatgtcggcgtcgtcgacgacgaggtcgccgt 268
                |||||||||||||| ||||||| ||| ||||||
Sbjct: 20705625 cgatgtcggcgtcggcgacgacaaggccgccgt 20705593



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 241      tcggcgtcgtcgacgacgag 260
                ||||||||||||||||||||
Sbjct: 21068348 tcggcgtcgtcgacgacgag 21068367
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 249     gtcgacgacgaggtcgccgttgatg 273
               |||||||||||||||||||| ||||
Sbjct: 1766710 gtcgacgacgaggtcgccgtcgatg 1766734
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 236      cgatgtcggcgtcgtcgacgacgaggtcgccgt 268
                |||||||||||||| ||||||| ||| ||||||
Sbjct: 20716897 cgatgtcggcgtcggcgacgacaaggccgccgt 20716865



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 241      tcggcgtcgtcgacgacgag 260
                ||||||||||||||||||||
Sbjct: 21079612 tcggcgtcgtcgacgacgag 21079631
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>emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006N15,
              complete sequence
          Length = 133413

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 234    gccgatgtcggcgtcgtcgacgacg 258
              |||||||||| ||||||||||||||
Sbjct: 105019 gccgatgtcgtcgtcgtcgacgacg 104995
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>ref|XM_471550.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 837

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 cggcgtcgtcgacgacgagg 261
           ||||||||||||||||||||
Sbjct: 214 cggcgtcgtcgacgacgagg 195
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>ref|NM_197655.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0015J15.29), mRNA
          Length = 1440

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 241 tcggcgtcgtcgacgacgag 260
           ||||||||||||||||||||
Sbjct: 85  tcggcgtcgtcgacgacgag 66
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>gb|AC094571.8| Rattus norvegicus 20 BAC CH230-4L21 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 230137

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    tcttaaatacaagagaggtt 103
             ||||||||||||||||||||
Sbjct: 82654 tcttaaatacaagagaggtt 82673
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 366     cttcttctcgccgctgacgg 385
               ||||||||||||||||||||
Sbjct: 3593435 cttcttctcgccgctgacgg 3593454
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 372     ctcgccgctgacggcgatga 391
               ||||||||||||||||||||
Sbjct: 1323852 ctcgccgctgacggcgatga 1323871
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 239     tgtcggcgtcgtcgacgacg 258
               ||||||||||||||||||||
Sbjct: 1625246 tgtcggcgtcgtcgacgacg 1625227
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>emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chromosome 1, complete
              sequence
          Length = 173580

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 106    atttctccatgatcctatcagctcctac 133
              ||||||||||||||| |||| |||||||
Sbjct: 156375 atttctccatgatccaatcacctcctac 156348
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>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16
          Length = 346362

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 368    tcttctcgccgctgacggcgatga 391
              |||||||||||||||||| |||||
Sbjct: 190124 tcttctcgccgctgacggtgatga 190147
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>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14
          Length = 348257

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 368    tcttctcgccgctgacggcgatga 391
              |||||||||||||||||| |||||
Sbjct: 103960 tcttctcgccgctgacggtgatga 103983
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>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12
          Length = 346359

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 368    tcttctcgccgctgacggcgatga 391
              |||||||||||||||||| |||||
Sbjct: 179689 tcttctcgccgctgacggtgatga 179712
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>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 242    cggcgtcgtcgacgacgagg 261
              ||||||||||||||||||||
Sbjct: 228093 cggcgtcgtcgacgacgagg 228112
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>emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019J05,
             complete sequence
          Length = 185211

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   cggcgtcgtcgacgacgagg 261
             ||||||||||||||||||||
Sbjct: 74067 cggcgtcgtcgacgacgagg 74048
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>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09,
              complete sequence
          Length = 145070

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 240    gtcggcgtcgtcgacgacgaggtcgccg 267
              |||| ||||||||||||||| |||||||
Sbjct: 102007 gtcgtcgtcgtcgacgacgacgtcgccg 102034
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>gb|AC087698.5| Homo sapiens chromosome 8, clone RP11-25K19, complete sequence
          Length = 150750

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    caagattgggttcagtttct 86
             ||||||||||||||||||||
Sbjct: 10979 caagattgggttcagtttct 10998
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>gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, complete sequence
          Length = 167258

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    ggttcagtttcttaaataca 94
             ||||||||||||||||||||
Sbjct: 17437 ggttcagtttcttaaataca 17456
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>gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 genomic sequence, complete
              sequence
          Length = 144798

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    tcggcgtcgtcgacgacgag 260
              ||||||||||||||||||||
Sbjct: 137358 tcggcgtcgtcgacgacgag 137339
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>gb|AC090152.4| Homo sapiens chromosome 8, clone RP11-554M1, complete sequence
          Length = 118755

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    caagattgggttcagtttct 86
             ||||||||||||||||||||
Sbjct: 14523 caagattgggttcagtttct 14504
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>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 323     tggcggcgagctcgacgtcg 342
               ||||||||||||||||||||
Sbjct: 1823593 tggcggcgagctcgacgtcg 1823612
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 240     gtcggcgtcgtcgacgacga 259
               ||||||||||||||||||||
Sbjct: 3776403 gtcggcgtcgtcgacgacga 3776422
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 240     gtcggcgtcgtcgacgacgaggtcgccg 267
               |||| ||||||||||||||| |||||||
Sbjct: 4734002 gtcgtcgtcgtcgacgacgacgtcgccg 4734029
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>emb|AL513406.1|CNS07EFT Human DNA sequence chromosome 8 of Homo sapiens (human)
          Length = 204955

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     caagattgggttcagtttct 86
              ||||||||||||||||||||
Sbjct: 141244 caagattgggttcagtttct 141225
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 254     cgacgaggtcgccgttgatgagct 277
               ||||||||||| ||||||||||||
Sbjct: 1147951 cgacgaggtcgtcgttgatgagct 1147974
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     gagaggttccatttctccat 115
              ||||||||||||||||||||
Sbjct: 418732 gagaggttccatttctccat 418713
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>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
            complete sequence
          Length = 187956

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 240  gtcggcgtcgtcgacgacgaggtcgccg 267
            |||| ||||||||||||||| |||||||
Sbjct: 6410 gtcgtcgtcgtcgacgacgacgtcgccg 6437


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,104,037
Number of Sequences: 3902068
Number of extensions: 3104037
Number of successful extensions: 65628
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64429
Number of HSP's gapped (non-prelim): 1199
length of query: 400
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 378
effective length of database: 17,147,199,772
effective search space: 6481641513816
effective search space used: 6481641513816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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