| Clone Name | rbaet39b12 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ304792.1|HVU304792 Hordeum vulgare bpao1 gene for flavin containing polyamine oxidase, exons 1-9 Length = 2942 Score = 69.9 bits (35), Expect = 6e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 65 caattaccaatcataatcttacacatcaatttgtacgtaaaatctttacgtaagccttt 123 ||||||||||||||||| || |||||||||| ||||||||||||||| ||||| |||| Sbjct: 201 caattaccaatcataattctatacatcaatttatacgtaaaatctttaagtaagtcttt 259
>gb|AY187023.1| Hordeum vulgare subsp. vulgare phosphate transporter HvPT8 gene, complete cds Length = 2276 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Plus Query: 64 tcaattaccaatcataatcttacacatcaatttgtacgtaaaat 107 |||||||||||||||||| ||||||| | ||| |||||||||| Sbjct: 52 tcaattaccaatcataattatacacatgagtttatacgtaaaat 95
>emb|BX470092.12| Mouse DNA sequence from clone RP23-230K20 on chromosome X, complete sequence Length = 95593 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 gaaacaaggaaattaatccaa 227 ||||||||||||||||||||| Sbjct: 74666 gaaacaaggaaattaatccaa 74646
>gb|CP000223.1| Drosophila melanogaster genomic scaffold 211000022280790 Length = 626829 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 aaattaatccaaatttacaag 236 ||||||||||||||||||||| Sbjct: 546285 aaattaatccaaatttacaag 546305
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 gtgctgaccgaagaagaacg 339 |||||||||||||||||||| Sbjct: 1075132 gtgctgaccgaagaagaacg 1075151
>ref|XM_637817.1| Dictyostelium discoideum hypothetical protein (DDB0202647), partial mRNA Length = 2232 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 aaattaatccaaatttacaa 235 |||||||||||||||||||| Sbjct: 1361 aaattaatccaaatttacaa 1380
>gb|AC117076.3| Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence Length = 146570 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 aaattaatccaaatttacaa 235 |||||||||||||||||||| Sbjct: 73171 aaattaatccaaatttacaa 73152
>gb|AC124503.2| Mus musculus BAC clone RP23-417F2 from chromosome 10, complete sequence Length = 206343 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ggaaacagtggtgctgactg 161 |||||||||||||||||||| Sbjct: 86620 ggaaacagtggtgctgactg 86601
>gb|AC121584.2| Mus musculus BAC clone RP23-265D17 from 1, complete sequence Length = 130455 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 tccttcatttactcaattac 71 |||||||||||||||||||| Sbjct: 15477 tccttcatttactcaattac 15496
>emb|CR753865.8| Zebrafish DNA sequence from clone DKEY-172B2 in linkage group 14, complete sequence Length = 134371 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 atttacaagtctggatgaat 247 |||||||||||||||||||| Sbjct: 39806 atttacaagtctggatgaat 39825
>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces hansenii Length = 1349926 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 catcaatttgtacgtaaaat 107 |||||||||||||||||||| Sbjct: 126503 catcaatttgtacgtaaaat 126484
>dbj|AK054865.1| Homo sapiens cDNA FLJ30303 fis, clone BRACE2003269 Length = 1529 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 atttttagtgggggtggggt 52 |||||||||||||||||||| Sbjct: 598 atttttagtgggggtggggt 617
>gb|AC007069.6| Arabidopsis thaliana chromosome 2 clone T23K3 map mi320, complete sequence Length = 73009 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 53 ccttcatttactcaattaccaatcataa 80 |||||||||||||||| ||||| ||||| Sbjct: 12900 ccttcatttactcaataaccaaacataa 12927
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 cagtggtgctgactgctgac 166 |||||||||||||||||||| Sbjct: 22594200 cagtggtgctgactgctgac 22594181
>gb|DQ011854.1| Ictalurus punctatus Mx2 (Mx2) mRNA, complete cds Length = 2224 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 ctcggaggagacagtggtgt 314 |||||||||||||||||||| Sbjct: 688 ctcggaggagacagtggtgt 707
>dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1097D05 Length = 144879 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 cagtggtgctgactgctgac 166 |||||||||||||||||||| Sbjct: 109937 cagtggtgctgactgctgac 109918
>gb|AC142408.3| Mus musculus BAC clone RP24-342F15 from 1, complete sequence Length = 162423 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 tccttcatttactcaattac 71 |||||||||||||||||||| Sbjct: 146068 tccttcatttactcaattac 146087
>emb|AL713991.13| Mouse DNA sequence from clone RP23-132C16 on chromosome 1, complete sequence Length = 210040 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 caaactaactcttctctccc 27 |||||||||||||||||||| Sbjct: 88971 caaactaactcttctctccc 88990 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,146,015 Number of Sequences: 3902068 Number of extensions: 3146015 Number of successful extensions: 59969 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59897 Number of HSP's gapped (non-prelim): 72 length of query: 426 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 404 effective length of database: 17,147,199,772 effective search space: 6927468707888 effective search space used: 6927468707888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)