ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet39b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ304792.1|HVU304792 Hordeum vulgare bpao1 gene for flavin c... 70 6e-09
2gb|AY187023.1| Hordeum vulgare subsp. vulgare phosphate transpor... 48 0.023
3emb|BX470092.12| Mouse DNA sequence from clone RP23-230K20 on ch... 42 1.4
4gb|CP000223.1| Drosophila melanogaster genomic scaffold 21100002... 42 1.4
5gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 5.7
6ref|XM_637817.1| Dictyostelium discoideum hypothetical protein (... 40 5.7
7gb|AC117076.3| Dictyostelium discoideum chromosome 2 map 3323568... 40 5.7
8gb|AC124503.2| Mus musculus BAC clone RP23-417F2 from chromosome... 40 5.7
9gb|AC121584.2| Mus musculus BAC clone RP23-265D17 from 1, comple... 40 5.7
10emb|CR753865.8| Zebrafish DNA sequence from clone DKEY-172B2 in ... 40 5.7
11emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS... 40 5.7
12dbj|AK054865.1| Homo sapiens cDNA FLJ30303 fis, clone BRACE2003269 40 5.7
13gb|AC007069.6| Arabidopsis thaliana chromosome 2 clone T23K3 map... 40 5.7
14dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
15gb|DQ011854.1| Ictalurus punctatus Mx2 (Mx2) mRNA, complete cds 40 5.7
16dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
17gb|AC142408.3| Mus musculus BAC clone RP24-342F15 from 1, comple... 40 5.7
18emb|AL713991.13| Mouse DNA sequence from clone RP23-132C16 on ch... 40 5.7

>emb|AJ304792.1|HVU304792 Hordeum vulgare bpao1 gene for flavin containing polyamine oxidase,
           exons 1-9
          Length = 2942

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                      
Query: 65  caattaccaatcataatcttacacatcaatttgtacgtaaaatctttacgtaagccttt 123
           |||||||||||||||||  || |||||||||| ||||||||||||||| ||||| ||||
Sbjct: 201 caattaccaatcataattctatacatcaatttatacgtaaaatctttaagtaagtcttt 259



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>gb|AY187023.1| Hordeum vulgare subsp. vulgare phosphate transporter HvPT8 gene,
           complete cds
          Length = 2276

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 64  tcaattaccaatcataatcttacacatcaatttgtacgtaaaat 107
           ||||||||||||||||||  ||||||| | ||| ||||||||||
Sbjct: 52  tcaattaccaatcataattatacacatgagtttatacgtaaaat 95



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>emb|BX470092.12| Mouse DNA sequence from clone RP23-230K20 on chromosome X, complete
             sequence
          Length = 95593

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 207   gaaacaaggaaattaatccaa 227
             |||||||||||||||||||||
Sbjct: 74666 gaaacaaggaaattaatccaa 74646



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>gb|CP000223.1| Drosophila melanogaster genomic scaffold 211000022280790
          Length = 626829

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 216    aaattaatccaaatttacaag 236
              |||||||||||||||||||||
Sbjct: 546285 aaattaatccaaatttacaag 546305



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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 320     gtgctgaccgaagaagaacg 339
               ||||||||||||||||||||
Sbjct: 1075132 gtgctgaccgaagaagaacg 1075151



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>ref|XM_637817.1| Dictyostelium discoideum hypothetical protein (DDB0202647), partial
            mRNA
          Length = 2232

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 216  aaattaatccaaatttacaa 235
            ||||||||||||||||||||
Sbjct: 1361 aaattaatccaaatttacaa 1380



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>gb|AC117076.3| Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4,
             complete sequence
          Length = 146570

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   aaattaatccaaatttacaa 235
             ||||||||||||||||||||
Sbjct: 73171 aaattaatccaaatttacaa 73152



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>gb|AC124503.2| Mus musculus BAC clone RP23-417F2 from chromosome 10, complete sequence
          Length = 206343

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   ggaaacagtggtgctgactg 161
             ||||||||||||||||||||
Sbjct: 86620 ggaaacagtggtgctgactg 86601



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>gb|AC121584.2| Mus musculus BAC clone RP23-265D17 from 1, complete sequence
          Length = 130455

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    tccttcatttactcaattac 71
             ||||||||||||||||||||
Sbjct: 15477 tccttcatttactcaattac 15496



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>emb|CR753865.8| Zebrafish DNA sequence from clone DKEY-172B2 in linkage group 14,
             complete sequence
          Length = 134371

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   atttacaagtctggatgaat 247
             ||||||||||||||||||||
Sbjct: 39806 atttacaagtctggatgaat 39825



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>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces
              hansenii
          Length = 1349926

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 88     catcaatttgtacgtaaaat 107
              ||||||||||||||||||||
Sbjct: 126503 catcaatttgtacgtaaaat 126484



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>dbj|AK054865.1| Homo sapiens cDNA FLJ30303 fis, clone BRACE2003269
          Length = 1529

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 33  atttttagtgggggtggggt 52
           ||||||||||||||||||||
Sbjct: 598 atttttagtgggggtggggt 617



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>gb|AC007069.6| Arabidopsis thaliana chromosome 2 clone T23K3 map mi320, complete
             sequence
          Length = 73009

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 53    ccttcatttactcaattaccaatcataa 80
             |||||||||||||||| ||||| |||||
Sbjct: 12900 ccttcatttactcaataaccaaacataa 12927



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 147      cagtggtgctgactgctgac 166
                ||||||||||||||||||||
Sbjct: 22594200 cagtggtgctgactgctgac 22594181



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>gb|DQ011854.1| Ictalurus punctatus Mx2 (Mx2) mRNA, complete cds
          Length = 2224

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 295 ctcggaggagacagtggtgt 314
           ||||||||||||||||||||
Sbjct: 688 ctcggaggagacagtggtgt 707



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>dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1097D05
          Length = 144879

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    cagtggtgctgactgctgac 166
              ||||||||||||||||||||
Sbjct: 109937 cagtggtgctgactgctgac 109918



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>gb|AC142408.3| Mus musculus BAC clone RP24-342F15 from 1, complete sequence
          Length = 162423

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     tccttcatttactcaattac 71
              ||||||||||||||||||||
Sbjct: 146068 tccttcatttactcaattac 146087



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>emb|AL713991.13| Mouse DNA sequence from clone RP23-132C16 on chromosome 1, complete
             sequence
          Length = 210040

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     caaactaactcttctctccc 27
             ||||||||||||||||||||
Sbjct: 88971 caaactaactcttctctccc 88990


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,146,015
Number of Sequences: 3902068
Number of extensions: 3146015
Number of successful extensions: 59969
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59897
Number of HSP's gapped (non-prelim): 72
length of query: 426
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 404
effective length of database: 17,147,199,772
effective search space: 6927468707888
effective search space used: 6927468707888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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