ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet39b07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC135922.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0411C02, complete sequence Length = 145676 Score = 216 bits (109), Expect = 5e-53 Identities = 149/160 (93%), Gaps = 3/160 (1%) Strand = Plus / Plus Query: 110 tgcacctgtatgctgacgactttgccaccggacggcgacaccttggggatggtgaggtag 169 |||||||| ||| ||||||| ||||| ||||| ||| |||||||||||||||||||||| Sbjct: 139287 tgcacctggatgttgacgaccttgccgccgga-ggc--caccttggggatggtgaggtag 139343 Query: 170 agcacgccgtccctcacctccgcggcgatcctctccacctccacgttctccggcagctcc 229 ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 139344 agcacgccgtccctcacctccgccgcgatccgctccacctccacgttctccggcagctcc 139403 Query: 230 acccgcgtcctgtaccgcccgtagctcgccgccggccacg 269 |||||||||||||||| |||| |||||||||||||||||| Sbjct: 139404 acccgcgtcctgtacctcccgaagctcgccgccggccacg 139443 Score = 161 bits (81), Expect = 2e-36 Identities = 108/117 (92%) Strand = Plus / Plus Query: 329 gccgccttctcggcgaccaccaccagcgtccggtcctgcacgctcacgcgcacgtcctcc 388 ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct: 139494 gccgccttctcggcgaccaccaccagcttccggtcctgcacgctcaccgtcacgtcctcc 139553 Query: 389 cgcgtcatgcccggcatgtcgaaccgcaccaggtagtcccccgcgcgctccttgatc 445 | ||||||||||||||||||| ||||||||||||| |||| ||||||||||||||| Sbjct: 139554 ctcgtcatgcccggcatgtcgtaccgcaccaggtacgccccggcgcgctccttgatc 139610
>gb|AC135915.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0082F22, complete sequence Length = 176038 Score = 216 bits (109), Expect = 5e-53 Identities = 149/160 (93%), Gaps = 3/160 (1%) Strand = Plus / Plus Query: 110 tgcacctgtatgctgacgactttgccaccggacggcgacaccttggggatggtgaggtag 169 |||||||| ||| ||||||| ||||| ||||| ||| |||||||||||||||||||||| Sbjct: 21995 tgcacctggatgttgacgaccttgccgccgga-ggc--caccttggggatggtgaggtag 22051 Query: 170 agcacgccgtccctcacctccgcggcgatcctctccacctccacgttctccggcagctcc 229 ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 22052 agcacgccgtccctcacctccgccgcgatccgctccacctccacgttctccggcagctcc 22111 Query: 230 acccgcgtcctgtaccgcccgtagctcgccgccggccacg 269 |||||||||||||||| |||| |||||||||||||||||| Sbjct: 22112 acccgcgtcctgtacctcccgaagctcgccgccggccacg 22151 Score = 161 bits (81), Expect = 2e-36 Identities = 108/117 (92%) Strand = Plus / Plus Query: 329 gccgccttctcggcgaccaccaccagcgtccggtcctgcacgctcacgcgcacgtcctcc 388 ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct: 22202 gccgccttctcggcgaccaccaccagcttccggtcctgcacgctcaccgtcacgtcctcc 22261 Query: 389 cgcgtcatgcccggcatgtcgaaccgcaccaggtagtcccccgcgcgctccttgatc 445 | ||||||||||||||||||| ||||||||||||| |||| ||||||||||||||| Sbjct: 22262 ctcgtcatgcccggcatgtcgtaccgcaccaggtacgccccggcgcgctccttgatc 22318
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 216 bits (109), Expect = 5e-53 Identities = 149/160 (93%), Gaps = 3/160 (1%) Strand = Plus / Plus Query: 110 tgcacctgtatgctgacgactttgccaccggacggcgacaccttggggatggtgaggtag 169 |||||||| ||| ||||||| ||||| ||||| ||| |||||||||||||||||||||| Sbjct: 13059218 tgcacctggatgttgacgaccttgccgccgga-ggc--caccttggggatggtgaggtag 13059274 Query: 170 agcacgccgtccctcacctccgcggcgatcctctccacctccacgttctccggcagctcc 229 ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 13059275 agcacgccgtccctcacctccgccgcgatccgctccacctccacgttctccggcagctcc 13059334 Query: 230 acccgcgtcctgtaccgcccgtagctcgccgccggccacg 269 |||||||||||||||| |||| |||||||||||||||||| Sbjct: 13059335 acccgcgtcctgtacctcccgaagctcgccgccggccacg 13059374 Score = 161 bits (81), Expect = 2e-36 Identities = 108/117 (92%) Strand = Plus / Plus Query: 329 gccgccttctcggcgaccaccaccagcgtccggtcctgcacgctcacgcgcacgtcctcc 388 ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct: 13059425 gccgccttctcggcgaccaccaccagcttccggtcctgcacgctcaccgtcacgtcctcc 13059484 Query: 389 cgcgtcatgcccggcatgtcgaaccgcaccaggtagtcccccgcgcgctccttgatc 445 | ||||||||||||||||||| ||||||||||||| |||| ||||||||||||||| Sbjct: 13059485 ctcgtcatgcccggcatgtcgtaccgcaccaggtacgccccggcgcgctccttgatc 13059541
>dbj|AK063686.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-F03, full insert sequence Length = 623 Score = 198 bits (100), Expect = 1e-47 Identities = 112/116 (96%) Strand = Plus / Plus Query: 154 ggggatggtgaggtagagcacgccgtccctcacctccgcggcgatcctctccacctccac 213 ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 1 ggggatggtgaggtagagcacgccgtccctcacctccgccgcgatccgctccacctccac 60 Query: 214 gttctccggcagctccacccgcgtcctgtaccgcccgtagctcgccgccggccacg 269 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct: 61 gttctccggcagctccacccgcgtcctgtacctcccgaagctcgccgccggccacg 116 Score = 161 bits (81), Expect = 2e-36 Identities = 108/117 (92%) Strand = Plus / Plus Query: 329 gccgccttctcggcgaccaccaccagcgtccggtcctgcacgctcacgcgcacgtcctcc 388 ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct: 167 gccgccttctcggcgaccaccaccagcttccggtcctgcacgctcaccgtcacgtcctcc 226 Query: 389 cgcgtcatgcccggcatgtcgaaccgcaccaggtagtcccccgcgcgctccttgatc 445 | ||||||||||||||||||| ||||||||||||| |||| ||||||||||||||| Sbjct: 227 ctcgtcatgcccggcatgtcgtaccgcaccaggtacgccccggcgcgctccttgatc 283
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 383 tcctcccgcgtcatgcccggcatgtcgaaccgca 416 |||||||||| || |||||||||||||||||||| Sbjct: 7667198 tcctcccgcgacaggcccggcatgtcgaaccgca 7667165 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 318 cgccttgcttcgccgccttct 338 ||||||||||||||||||||| Sbjct: 24717023 cgccttgcttcgccgccttct 24717003 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 tcctctccggccgcctcgcc 321 |||||||||||||||||||| Sbjct: 33942202 tcctctccggccgcctcgcc 33942221
>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0096L14, from chromosome 3, complete sequence Length = 131142 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 383 tcctcccgcgtcatgcccggcatgtcgaaccgca 416 |||||||||| || |||||||||||||||||||| Sbjct: 48092 tcctcccgcgacaggcccggcatgtcgaaccgca 48125
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 383 tcctcccgcgtcatgcccggcatgtcgaaccgca 416 |||||||||| || |||||||||||||||||||| Sbjct: 7665033 tcctcccgcgacaggcccggcatgtcgaaccgca 7665000 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 318 cgccttgcttcgccgccttct 338 ||||||||||||||||||||| Sbjct: 24633853 cgccttgcttcgccgccttct 24633833 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 tcctctccggccgcctcgcc 321 |||||||||||||||||||| Sbjct: 34032674 tcctctccggccgcctcgcc 34032693
>dbj|AK120048.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-H09, full insert sequence Length = 1013 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 383 tcctcccgcgtcatgcccggcatgtcgaaccgca 416 |||||||||| || |||||||||||||||||||| Sbjct: 587 tcctcccgcgacaggcccggcatgtcgaaccgca 554
>dbj|AK120045.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-F09, full insert sequence Length = 1013 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 383 tcctcccgcgtcatgcccggcatgtcgaaccgca 416 |||||||||| || |||||||||||||||||||| Sbjct: 587 tcctcccgcgacaggcccggcatgtcgaaccgca 554
>dbj|AK063618.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-E01, full insert sequence Length = 995 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 383 tcctcccgcgtcatgcccggcatgtcgaaccgca 416 |||||||||| || |||||||||||||||||||| Sbjct: 587 tcctcccgcgacaggcccggcatgtcgaaccgca 554
>dbj|AB020973.1| Oryza sativa mRNA for heat shock protein 26, complete cds Length = 1000 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 383 tcctcccgcgtcatgcccggcatgtcgaaccgca 416 |||||||||| || |||||||||||||||||||| Sbjct: 573 tcctcccgcgacaggcccggcatgtcgaaccgca 540
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 170 agcacgccgtccctcacctccgcggcgatcctctccacctccacgttctccgg 222 ||||||||||||||||||||||| | ||||| |||| || || ||| |||||| Sbjct: 5639379 agcacgccgtccctcacctccgccgtgatcccctccgccaccgcgtcctccgg 5639431
>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0419A09 Length = 168064 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 170 agcacgccgtccctcacctccgcggcgatcctctccacctccacgttctccgg 222 ||||||||||||||||||||||| | ||||| |||| || || ||| |||||| Sbjct: 67115 agcacgccgtccctcacctccgccgtgatcccctccgccaccgcgtcctccgg 67167
>dbj|AK106682.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-B07, full insert sequence Length = 2229 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Minus Query: 170 agcacgccgtccctcacctccgcggcgatcctctccacctccacgttctccgg 222 ||||||||||||||||||||||| | ||||| |||| || || ||| |||||| Sbjct: 1956 agcacgccgtccctcacctccgccgtgatcccctccgccaccgcgtcctccgg 1904
>emb|AL157817.13| Human DNA sequence from clone RP11-457D13 on chromosome 13q14.2-21.1 Contains a 60S ribosomal protein 5 (RPL5) pseudogene, a novel gene and a CpG island, complete sequence Length = 176148 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Plus Query: 13 tctggaaactaaaaataccacaa 35 ||||||||||||||||||||||| Sbjct: 57872 tctggaaactaaaaataccacaa 57894
>emb|AJ575648.1|STH575648 Streptomyces thioluteus aureothin biosynthesis gene cluster (aurABCDEFGHI genes), strain HKI-22 Length = 29132 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Plus Query: 300 cgtcctctccggccgcctcgcct 322 ||||||||||||||||||||||| Sbjct: 22346 cgtcctctccggccgcctcgcct 22368
>ref|XM_841342.1| Trypanosoma brucei TREU927 hypothetical protein (Tb927.1.4010) partial mRNA Length = 3750 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 344 accaccaccagcgtccggtcct 365 |||||||||||||||||||||| Sbjct: 2433 accaccaccagcgtccggtcct 2412
>ref|NM_186863.1| Oryza sativa (japonica cultivar-group), mRNA Length = 630 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 310 ggccgcctcgccttgcttcgccgcc 334 ||||||||||||| ||||||||||| Sbjct: 427 ggccgcctcgcctcgcttcgccgcc 451
>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence, complete sequence Length = 141691 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 318 cgccttgcttcgccgccttct 338 ||||||||||||||||||||| Sbjct: 92570 cgccttgcttcgccgccttct 92550
>gb|DQ195536.1| Streptomyces antibioticus oleandomycin glycosyltransferase (oleD) gene, partial cds Length = 1245 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 205 cacctccacgttctccggcagctcc 229 |||||||||||| |||||||||||| Sbjct: 858 cacctccacgttgtccggcagctcc 834
>gb|AC102217.9| Mus musculus chromosome 1, clone RP24-160A23, complete sequence Length = 214578 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 actaaaaataccacaacttgt 40 ||||||||||||||||||||| Sbjct: 133780 actaaaaataccacaacttgt 133760
>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183327 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 318 cgccttgcttcgccgccttct 338 ||||||||||||||||||||| Sbjct: 12542 cgccttgcttcgccgccttct 12522
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 310 ggccgcctcgccttgcttcgccgcc 334 ||||||||||||| ||||||||||| Sbjct: 8417795 ggccgcctcgcctcgcttcgccgcc 8417819
>gb|AC157363.6| Mus musculus chromosome 1, clone RP23-478L14, complete sequence Length = 209942 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 actaaaaataccacaacttgt 40 ||||||||||||||||||||| Sbjct: 145072 actaaaaataccacaacttgt 145092
>dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0021G06 Length = 137678 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 310 ggccgcctcgccttgcttcgccgcc 334 ||||||||||||| ||||||||||| Sbjct: 122893 ggccgcctcgcctcgcttcgccgcc 122917
>emb|Z22577.1|SAGLCTRAA S.antibioticus membrane protein, lipoprotein, and glycosyltransferase genes Length = 3389 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 205 cacctccacgttctccggcagctcc 229 |||||||||||| |||||||||||| Sbjct: 2904 cacctccacgttgtccggcagctcc 2880
>dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0056I06 Length = 138653 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 310 ggccgcctcgccttgcttcgccgcc 334 ||||||||||||| ||||||||||| Sbjct: 49388 ggccgcctcgcctcgcttcgccgcc 49412
>ref|XM_314655.2| Anopheles gambiae str. PEST ENSANGP00000004995 (ENSANGG00000003864), partial mRNA Length = 1617 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 cacgttctccggcagctccac 231 ||||||||||||||||||||| Sbjct: 741 cacgttctccggcagctccac 761
>emb|AL133371.3|CNS01DUW Human chromosome 14 DNA sequence BAC R-219E7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 162472 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 ctctccacctccacgttctcc 220 ||||||||||||||||||||| Sbjct: 85853 ctctccacctccacgttctcc 85833
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 389 cgcgtcatgcccggcatgtcgaac 412 |||||| ||||||||||||||||| Sbjct: 2151771 cgcgtcgtgcccggcatgtcgaac 2151794
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 gcgtcatgcccggcatgtcg 409 |||||||||||||||||||| Sbjct: 3248668 gcgtcatgcccggcatgtcg 3248649
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 338 tcggcgaccaccaccagcgtccgg 361 ||||| |||||||||||||||||| Sbjct: 2396363 tcggccaccaccaccagcgtccgg 2396340
>gb|AC110253.10| Mus musculus chromosome 5, clone RP23-270N2, complete sequence Length = 224182 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 363 cctgcacgctcacgcgcacgtcct 386 ||||||||||||||||||| |||| Sbjct: 104349 cctgcacgctcacgcgcacttcct 104326
>emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome Length = 1395502 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 cctcaaaactaagacactct 74 |||||||||||||||||||| Sbjct: 1012320 cctcaaaactaagacactct 1012301
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 209 tccacgttctccggcagctccacc 232 |||||||||||||||||| ||||| Sbjct: 3341132 tccacgttctccggcagcaccacc 3341155
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 cgaaccgcaccaggtagtcc 427 |||||||||||||||||||| Sbjct: 3440 cgaaccgcaccaggtagtcc 3459
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 372 tcacgcgcacgtcctcccgcgtca 395 |||||||||||||||||| ||||| Sbjct: 12630927 tcacgcgcacgtcctcccacgtca 12630950
>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence Length = 172337 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 tcctctccggccgcctcgcc 321 |||||||||||||||||||| Sbjct: 115489 tcctctccggccgcctcgcc 115470
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 gcttcgccgccttctcggcg 343 |||||||||||||||||||| Sbjct: 4194715 gcttcgccgccttctcggcg 4194734
>dbj|AK071618.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104J18, full insert sequence Length = 916 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 tcctctccggccgcctcgcc 321 |||||||||||||||||||| Sbjct: 126 tcctctccggccgcctcgcc 107
>dbj|AK067639.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108J11, full insert sequence Length = 2643 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 372 tcacgcgcacgtcctcccgcgtca 395 |||||||||||||||||| ||||| Sbjct: 403 tcacgcgcacgtcctcccacgtca 380
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 243 accgcccgtagctcgccgccggcc 266 |||||||| ||||||||||||||| Sbjct: 2836488 accgcccgcagctcgccgccggcc 2836511
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 ctcggcgaccaccaccagcg 356 |||||||||||||||||||| Sbjct: 3645883 ctcggcgaccaccaccagcg 3645902
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 372 tcacgcgcacgtcctcccgcgtca 395 |||||||||||||||||| ||||| Sbjct: 12585201 tcacgcgcacgtcctcccacgtca 12585224
>emb|AL844499.5|CNS08CAW Oryza sativa chromosome 12, . BAC OSJNBb0092K12 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 129540 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 372 tcacgcgcacgtcctcccgcgtca 395 |||||||||||||||||| ||||| Sbjct: 76115 tcacgcgcacgtcctcccacgtca 76138
>gb|AC126450.4| Mus musculus BAC clone RP23-379J7 from 3, complete sequence Length = 159914 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 aactaagacactctgagcta 80 |||||||||||||||||||| Sbjct: 124140 aactaagacactctgagcta 124121 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,401,300 Number of Sequences: 3902068 Number of extensions: 3401300 Number of successful extensions: 54707 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53709 Number of HSP's gapped (non-prelim): 998 length of query: 445 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 423 effective length of database: 17,147,199,772 effective search space: 7253265503556 effective search space used: 7253265503556 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
