ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet39b02 |
|---|---|
| Clone Library Name | barley_pub |
>PRDM1_HUMAN (O75626) PR domain zinc finger protein 1 (PR domain-containing| protein 1) (Beta-interferon gene positive-regulatory domain I-binding factor) (BLIMP-1) (Positive regulatory domain I-binding factor 1) (PRDI-binding factor 1) (PRDI-BF1) Length = 789 Score = 31.2 bits (69), Expect = 1.2 Identities = 24/65 (36%), Positives = 28/65 (43%) Frame = -1 Query: 427 GAVTNPFGDGFYQGEREAPLEAATACPGVYGKGAYPGYAGQLLVDGATGASYNAHGAHGR 248 G +P G G E A G G G+YPGYA + A SYNAH Sbjct: 321 GNTVSPVGPG--SQEHRDSYAYLNASYGTEGLGSYPGYAPLPHLPPAFIPSYNAHYP--- 375 Query: 247 KYLLP 233 K+LLP Sbjct: 376 KFLLP 380
>NKX25_HUMAN (P52952) Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E)| (Cardiac-specific homeobox) (Homeobox protein CSX) Length = 324 Score = 30.0 bits (66), Expect = 2.8 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +3 Query: 300 SSWPAYPGYAPLPYTPGHAVAASSGASRSP 389 +++PAYPGY +PG++ A+ A SP Sbjct: 251 NAYPAYPGYGGAACSPGYSCTAAYPAGPSP 280
>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 29.6 bits (65), Expect = 3.6 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Frame = +3 Query: 303 SWPAYPG-YAPLPYTPGHAVAASSGASRSPW*NPSPNGLVTAPATMLAT 446 S P P +APLP P H + A P NP P + P+T AT Sbjct: 238 SLPPLPNQFAPLPDPPQHNSPPQNNAPSQPQSNPFPFPIPEIPSTQSAT 286
>PRDM1_MOUSE (Q60636) PR domain zinc finger protein 1 (PR domain-containing| protein 1) (Beta-interferon gene positive-regulatory domain I-binding factor) (BLIMP-1) Length = 856 Score = 29.3 bits (64), Expect = 4.7 Identities = 18/38 (47%), Positives = 21/38 (55%) Frame = -1 Query: 346 GVYGKGAYPGYAGQLLVDGATGASYNAHGAHGRKYLLP 233 G G G+YPGYA + A SYNAH K+LLP Sbjct: 414 GSEGLGSYPGYAPAPHLPPAFIPSYNAHYP---KFLLP 448
>LON3_CAEEL (Q23628) Cuticle collagen lon-3 precursor| Length = 324 Score = 29.3 bits (64), Expect = 4.7 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 4/65 (6%) Frame = -1 Query: 427 GAVTNPFGDGFYQGEREAP----LEAATACPGVYGKGAYPGYAGQLLVDGATGASYNAHG 260 G T P G QG + AP + A PG G+ PG G++ GA G A G Sbjct: 163 GCFTCPQGLPGPQGSQGAPGIRGMRGARGQPGYPGRDGQPGMPGEMGPTGAPGDD-GAPG 221 Query: 259 AHGRK 245 A G K Sbjct: 222 ASGMK 226
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 28.9 bits (63), Expect = 6.2 Identities = 17/51 (33%), Positives = 22/51 (43%) Frame = -1 Query: 430 AGAVTNPFGDGFYQGEREAPLEAATACPGVYGKGAYPGYAGQLLVDGATGA 278 AG NP DG + + AT PG+ G +PG G G +GA Sbjct: 371 AGPAGNPGADG------QPGAKGATGAPGIAGAPGFPGARGPSGPQGPSGA 415
>GRP1_HORVU (P17816) Glycine-rich cell wall structural protein precursor| Length = 200 Score = 28.9 bits (63), Expect = 6.2 Identities = 16/52 (30%), Positives = 20/52 (38%) Frame = -1 Query: 406 GDGFYQGEREAPLEAATACPGVYGKGAYPGYAGQLLVDGATGASYNAHGAHG 251 G G+ G P G G G YPG+ G+ G Y+ HG G Sbjct: 79 GGGYGGGGGGYPGHGGEGGGGYGGGGGYPGHGGEGGGGYGGGGGYHGHGGEG 130
>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 28.9 bits (63), Expect = 6.2 Identities = 24/63 (38%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Frame = -1 Query: 433 VAGAV--TNPFGDGFYQGEREAPLEAATACPGVYGKGAYPGYAGQLLVDGATGASYNAHG 260 V GAV P G GER A PG G+ PG G++ G GA AHG Sbjct: 626 VVGAVGTAGPSGPSGLPGER-----GAAGIPGGKGEKGEPGLRGEIGNPGRDGAR-GAHG 679 Query: 259 AHG 251 A G Sbjct: 680 AVG 682
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 28.5 bits (62), Expect = 8.1 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Frame = -1 Query: 412 PFGDGFYQGEREAPLEAAT-ACPGVYGKGAYPGYAGQLLVDGATGAS 275 P G+ GE AP + PG G+ PG AG DGATGA+ Sbjct: 281 PKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAA 327
>BETT_ECOLI (P0ABC9) High-affinity choline transport protein| Length = 677 Score = 28.5 bits (62), Expect = 8.1 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = +1 Query: 70 IYTYMHYSTTSCTQYSLARWAASGFDSLHLSLPLCRRTSPTPAWSRR 210 ++T HY T + Y+L A G+ S +LPL R++ P + +R Sbjct: 140 VWTLFHYGLTGWSMYALMGMAL-GYFSYRYNLPLTIRSALYPIFGKR 185
>BETT_ECO57 (P0ABD0) High-affinity choline transport protein| Length = 677 Score = 28.5 bits (62), Expect = 8.1 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = +1 Query: 70 IYTYMHYSTTSCTQYSLARWAASGFDSLHLSLPLCRRTSPTPAWSRR 210 ++T HY T + Y+L A G+ S +LPL R++ P + +R Sbjct: 140 VWTLFHYGLTGWSMYALMGMAL-GYFSYRYNLPLTIRSALYPIFGKR 185
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 28.5 bits (62), Expect = 8.1 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Frame = -1 Query: 412 PFGDGFYQGEREAPLEAAT-ACPGVYGKGAYPGYAGQLLVDGATGAS 275 P G+ GE AP + PG G+ PG AG DGATGA+ Sbjct: 285 PKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAA 331
>SPD2_NEPCL (P46804) Spidroin 2 (Dragline silk fibroin 2) (Fragment)| Length = 627 Score = 28.5 bits (62), Expect = 8.1 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = +3 Query: 309 PAYPGYAPLPYTPGHAVAASSGASRSPW*NPSPNGLVTAPATMLAT 446 PA G P Y PG AVAAS+GA + + P +A A+ LA+ Sbjct: 495 PAQQG--PAGYGPGSAVAASAGAGSAGY---GPGSQASAAASRLAS 535 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,599,191 Number of Sequences: 219361 Number of extensions: 867747 Number of successful extensions: 3062 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2646 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3044 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
