>VLPD_MYCHR (Q49536) Variant surface antigen D precursor (VLPD prolipoprotein)|
          Length = 168

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +2

Query: 86  QTSTTN*KQEN*TNPSNAMLLFRAGSNSTASSKEQASEQLTSLTGSPSGYCS*AARTRQG 265
           Q+ +T+  +E  ++ S +    +  S+ST++SKEQ S   TS +       S +    QG
Sbjct: 84  QSDSTSTSKEQGSSDSTSTSKEQGSSDSTSTSKEQGSSDSTSTSKEQGSSDSTSTSKEQG 143

Query: 266 S 268
           S
Sbjct: 144 S 144

>NRF1_MOUSE (Q9WU00) Nuclear respiratory factor 1 (NRF-1) (Alpha|
           palindromic-binding protein) (Alpha-pal)
          Length = 503

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 18/75 (24%), Positives = 33/75 (44%)
 Frame = +2

Query: 11  ENFLYASLFDTTDQSIQRIINHRLQQTSTTN*KQEN*TNPSNAMLLFRAGSNSTASSKEQ 190
           E+ LYA  F+      Q    H +     +    +  +NP   + L + G+ +T ++   
Sbjct: 276 EDLLYA--FEDQQTQTQATTTHSIAHLVPSQTVVQTFSNPDGTVSLIQVGTGATVATLAD 333

Query: 191 ASEQLTSLTGSPSGY 235
           ASE  T++T +   Y
Sbjct: 334 ASELPTTVTVAQVNY 348

>NRF1_HUMAN (Q16656) Nuclear respiratory factor 1 (NRF-1) (Alpha|
           palindromic-binding protein) (Alpha-pal)
          Length = 503

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 18/75 (24%), Positives = 33/75 (44%)
 Frame = +2

Query: 11  ENFLYASLFDTTDQSIQRIINHRLQQTSTTN*KQEN*TNPSNAMLLFRAGSNSTASSKEQ 190
           E+ LYA  F+      Q    H +     +    +  +NP   + L + G+ +T ++   
Sbjct: 276 EDLLYA--FEDQQTQTQATATHSIAHLVPSQTVVQTFSNPDGTVSLIQVGTGATVATLAD 333

Query: 191 ASEQLTSLTGSPSGY 235
           ASE  T++T +   Y
Sbjct: 334 ASELPTTVTVAQVNY 348


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,478,754
Number of Sequences: 219361
Number of extensions: 575282
Number of successful extensions: 1475
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1472
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)