ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet38g03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB029935.1| Triticum aestivum mRNA for chitinase 2, complete... 133 4e-28
2gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome... 56 8e-05
3gb|AY444342.1| Oryza sativa chitinase gene, complete cds 56 8e-05
4gb|L40337.1|RICRCH1 Oryza sativa chitinase (Rcht1) mRNA, complet... 56 8e-05
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 56 8e-05
6gb|L37289.1|RICCHITA Oryza sativa chitinase mRNA, complete cds 56 8e-05
7gb|L40336.1|RICCHITB Oryza sativa chitinase (Rcht2) gene, comple... 48 0.018
8gb|L40338.1|RICRCH0 Oryza sativa (clone RCH08) chitinase (Rcht2)... 48 0.018
9gb|AF013580.1|AF013580 Oryza sativa clone RGCH8 chitinase gene, ... 48 0.018
10gb|AF001500.1|OSAF001500 Oryza sativa clone MIRCH1 chitinase mRN... 48 0.018
11gb|AC146189.3| Pan troglodytes BAC clone CH251-490L21 from Y, co... 46 0.073
12gb|AC140850.20| Medicago truncatula clone mth2-11i23, complete s... 46 0.073
13emb|X15349.1|HVENDCHT Barley (H.vulgare) mRNA for endochitinase 46 0.073
14dbj|BS000612.1| Pan troglodytes chromosome Y clone:PTBY-009O17, ... 46 0.073
15gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 46 0.073
16gb|AY973230.1| Triticum aestivum cultivar Sumai 3 class II chiti... 46 0.073
17gb|AY973229.1| Triticum aestivum cultivar Gamenya class II chiti... 46 0.073
18gb|U02287.1|HVU02287 Hordeum vulgare cultivar NK1558 chitinase g... 46 0.073
19gb|AC154093.1| Homo sapiens chromosome 13 clone fa0790, complete... 44 0.29
20gb|AC124684.3| Mus musculus BAC clone RP24-375D13 from chromosom... 44 0.29
21emb|AL359649.8| Human DNA sequence from clone RP11-65D24 on chro... 44 0.29
22gb|AC153149.4| Mus musculus BAC clone RP23-176O2 from chromosome... 44 0.29
23gb|AC084760.2| Gallus gallus clone WAG-65N20, complete sequence 44 0.29
24gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, c... 44 0.29
25gb|AC153644.3| Mus musculus BAC clone RP24-531A1 from 1, complet... 44 0.29
26gb|L34211.1|BLYCHI33A Hordeum vulgare chitinase (CHI33) gene, co... 44 0.29
27gb|AC140314.2| Mus musculus BAC clone RP23-395L3 from chromosome... 42 1.1
28emb|AL591393.10| Human DNA sequence from clone RP11-224J22 on ch... 42 1.1
29emb|BX322565.11| Zebrafish DNA sequence from clone CH211-262K18 ... 42 1.1
30emb|BX294098.11| Zebrafish DNA sequence from clone CH211-254P12 ... 42 1.1
31gb|AC155311.2| Mus musculus BAC clone RP23-407F7 from chromosome... 42 1.1
32emb|BX294095.13| Zebrafish DNA sequence from clone CH211-248L17 ... 42 1.1
33ref|NM_197598.1| Oryza sativa (japonica cultivar-group) putative... 40 4.5
34ref|NM_197596.1| Oryza sativa (japonica cultivar-group) chitinas... 40 4.5
35gb|AC166486.5| Mus musculus chromosome 1, clone RP23-187M9, comp... 40 4.5
36gb|AC131725.2| Mus musculus BAC clone RP23-129H16 from chromosom... 40 4.5
37gb|AC124374.5| Mus musculus BAC clone RP24-567K8 from chromosome... 40 4.5
38gb|AC069288.7| Homo sapiens BAC clone RP11-416J17 from 7, comple... 40 4.5
39emb|BX901895.15| Zebrafish DNA sequence from clone CH211-218C11 ... 40 4.5
40emb|CR931785.6| Zebrafish DNA sequence from clone DKEY-230N5 in ... 40 4.5
41gb|AC121591.4| Mus musculus BAC clone RP23-289H3 from 1, complet... 40 4.5
42emb|CR933541.6| Mouse DNA sequence from clone DN-97M20 on chromo... 40 4.5
43gb|AC158914.4| Mus musculus chromosome 5, clone RP24-249F11, com... 40 4.5
44emb|AL592044.4| Human DNA sequence from clone RP13-407F1 on chro... 40 4.5
45gb|CP000088.1| Thermobifida fusca YX, complete genome 40 4.5
46emb|X56787.1|OSLMRNAC O.sativa L. mRNA for endochitinase 40 4.5
47gb|AY747625.1| Brassica rapa oleosin-like protein mRNA, partial cds 40 4.5
48emb|AL596185.12| Mouse DNA sequence from clone RP23-172M21 on ch... 40 4.5
49emb|AL591420.5| Zebrafish DNA sequence from clone BUSM1-221H6 in... 40 4.5
50emb|AL645902.6| Mouse DNA sequence from clone RP23-19I2 on chrom... 40 4.5
51gb|AC018352.23| Homo sapiens 3 BAC RP11-124O2 (Roswell Park Canc... 40 4.5
52gb|AC013701.6| Homo sapiens, clone RP11-22C8, complete sequence 40 4.5
53gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 geno... 40 4.5
54gb|S37032.1| oleosin napII [rapeseeds, mRNA, 810 nt] 40 4.5
55gb|DQ328612.1| Brassica napus oleosin-like protein gene, complet... 40 4.5
56gb|AC161378.2| Mus musculus BAC clone RP23-202A6 from chromosome... 40 4.5
57gb|AC154429.4| Mus musculus BAC clone RP24-202G18 from chromosom... 40 4.5
58dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
59dbj|AB051579.1| Secale cereale rscc mRNA for seed chitinase-c, c... 40 4.5
60emb|BX649239.1| Sminthopsis DNA sequence from clone RZPD668-232B... 40 4.5
61emb|X58000.1|BNOLEOSIN B.napus mRNA for major oleosin, nap-II 40 4.5
62dbj|AK108949.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
63dbj|AK070067.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
64gb|AF000965.1|AF000965 Poa pratensis chitinase (Chi3) pseudogene... 40 4.5
65emb|AL954849.14| Zebrafish DNA sequence from clone DKEY-7N10 in ... 40 4.5
66gb|AC124225.13| Mus musculus chromosome 16, clone RP23-83P23, co... 40 4.5
67dbj|D16222.1|RICCHT2 Oryza sativa (japonica cultivar-group) Cht-... 40 4.5
68gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
69emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on ch... 40 4.5
70emb|AL671885.13| Mouse DNA sequence from clone RP23-132C19 on ch... 40 4.5
71emb|AL663064.12| Mouse DNA sequence from clone RP23-12F1 on chro... 40 4.5
72gb|AC133010.2| Homo sapiens chromosome 3 clone RP13-597L11, comp... 40 4.5
73gb|U02286.1|OSU02286 Oryza sativa IR58 chitinase mRNA, complete cds 40 4.5
74dbj|AB016497.1| Oryza sativa mRNA for chitinase, complete cds 40 4.5 
>dbj|AB029935.1| Triticum aestivum mRNA for chitinase 2, complete cds
          Length = 1163

 Score =  133 bits (67), Expect = 4e-28
 Identities = 82/87 (94%)
 Strand = Plus / Minus

                                                                       
Query: 252 atctcactgcaccgcgagcccgatgttgaacgacaattggttgtagcagtcgaggttatt 311
           |||||||||  |||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 983 atctcactgtgccgcgagcccaacgttgaacgacaattggttgtagcagtcgaggttatt 924

                                      
Query: 312 cccgtagccgatgccgaagatgtcaca 338
           |||||||||||||||||| ||||||||
Sbjct: 923 cccgtagccgatgccgaaaatgtcaca 897



 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                        
Query: 141  aggtctggacatccatttatttggtcataaaatacttaccaagattatttatttgtgggt 200
            |||||||| |||||||||||||||||||||| ||||| |||||||||||||||| || ||
Sbjct: 1085 aggtctggtcatccatttatttggtcataaagtacttcccaagattatttatttatgtgt 1026

                 
Query: 201  gatca 205
            |||||
Sbjct: 1025 gatca 1021
to top
>gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01,
             complete sequence
          Length = 146303

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                     
Query: 289   tggttgtagcagtcgaggttattcccgtagccgatgccga 328
             |||| |||||||||||||||  ||||||||||||||||||
Sbjct: 96288 tggtcgtagcagtcgaggttgctcccgtagccgatgccga 96249



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   tggttgtagcagtcgaggtt 308
             ||||||||||||||||||||
Sbjct: 87376 tggttgtagcagtcgaggtt 87357
to top
>gb|AY444342.1| Oryza sativa chitinase gene, complete cds
          Length = 1101

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                    
Query: 289  tggttgtagcagtcgaggttattcccgtagccgatgccga 328
            |||| |||||||||||||||  ||||||||||||||||||
Sbjct: 1064 tggtcgtagcagtcgaggttgctcccgtagccgatgccga 1025
to top
>gb|L40337.1|RICRCH1 Oryza sativa chitinase (Rcht1) mRNA, complete cds
          Length = 1204

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 289 tggttgtagcagtcgaggttattcccgtagccgatgccga 328
           |||| |||||||||||||||  ||||||||||||||||||
Sbjct: 971 tggtcgtagcagtcgaggttgctcccgtagccgatgccga 932
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                        
Query: 289      tggttgtagcagtcgaggttattcccgtagccgatgccga 328
                |||| |||||||||||||||  ||||||||||||||||||
Sbjct: 19292213 tggtcgtagcagtcgaggttgctcccgtagccgatgccga 19292174



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 289      tggttgtagcagtcgaggtt 308
                ||||||||||||||||||||
Sbjct: 19283301 tggttgtagcagtcgaggtt 19283282
to top
>gb|L37289.1|RICCHITA Oryza sativa chitinase mRNA, complete cds
          Length = 1291

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                    
Query: 289  tggttgtagcagtcgaggttattcccgtagccgatgccga 328
            |||| |||||||||||||||  ||||||||||||||||||
Sbjct: 1007 tggtcgtagcagtcgaggttgctcccgtagccgatgccga 968
to top
>gb|L40336.1|RICCHITB Oryza sativa chitinase (Rcht2) gene, complete cds
          Length = 5595

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 289  tggttgtagcagtcgaggttattcccgtagcc 320
            ||||||||||||||||||||  ||||||||||
Sbjct: 4846 tggttgtagcagtcgaggttgctcccgtagcc 4815
to top
>gb|L40338.1|RICRCH0 Oryza sativa (clone RCH08) chitinase (Rcht2) mRNA, 3' end of cds
          Length = 652

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 289 tggttgtagcagtcgaggttattcccgtagcc 320
           ||||||||||||||||||||  ||||||||||
Sbjct: 509 tggttgtagcagtcgaggttgctcccgtagcc 478
to top
>gb|AF013580.1|AF013580 Oryza sativa clone RGCH8 chitinase gene, complete cds
          Length = 2730

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 289  tggttgtagcagtcgaggttattcccgtagcc 320
            ||||||||||||||||||||  ||||||||||
Sbjct: 2296 tggttgtagcagtcgaggttgctcccgtagcc 2265
to top
>gb|AF001500.1|OSAF001500 Oryza sativa clone MIRCH1 chitinase mRNA, partial cds
          Length = 913

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 289 tggttgtagcagtcgaggttattcccgtagcc 320
           ||||||||||||||||||||  ||||||||||
Sbjct: 756 tggttgtagcagtcgaggttgctcccgtagcc 725
to top
>gb|AC146189.3| Pan troglodytes BAC clone CH251-490L21 from Y, complete sequence
          Length = 180597

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 207    cacatccacacacgcacatgcat 229
              |||||||||||||||||||||||
Sbjct: 119650 cacatccacacacgcacatgcat 119628
to top
>gb|AC140850.20| Medicago truncatula clone mth2-11i23, complete sequence
          Length = 138846

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 202    atcatcacatccacacacgcacatgca 228
              |||||||||||| ||||||||||||||
Sbjct: 130057 atcatcacatccccacacgcacatgca 130031
to top
>emb|X15349.1|HVENDCHT Barley (H.vulgare) mRNA for endochitinase
          Length = 556

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 293 tgtagcagtcgaggttattcccgtagccgatgccgaagatgtc 335
           |||||||||||||||| || |||||||| | ||||| ||||||
Sbjct: 517 tgtagcagtcgaggttgttgccgtagccaacgccgaggatgtc 475
to top
>dbj|BS000612.1| Pan troglodytes chromosome Y clone:PTBY-009O17, complete sequences
          Length = 80000

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 207   cacatccacacacgcacatgcat 229
             |||||||||||||||||||||||
Sbjct: 64086 cacatccacacacgcacatgcat 64108
to top
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 207      cacatccacacacgcacatgcat 229
                |||||||||||||||||||||||
Sbjct: 23891747 cacatccacacacgcacatgcat 23891725
to top
>gb|AY973230.1| Triticum aestivum cultivar Sumai 3 class II chitinase gene,
           complete cds
          Length = 811

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 289 tggttgtagcagtcgaggttattcccgtagccgatgccgaagatgtc 335
           |||||||||||||||||||| |  |||||||| | ||||| ||||||
Sbjct: 785 tggttgtagcagtcgaggttgtcgccgtagccaacgccgaggatgtc 739
to top
>gb|AY973229.1| Triticum aestivum cultivar Gamenya class II chitinase gene,
           complete cds
          Length = 891

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 289 tggttgtagcagtcgaggttattcccgtagccgatgccgaagatgtc 335
           |||||||||||||||||||| |  |||||||| | ||||| ||||||
Sbjct: 785 tggttgtagcagtcgaggttgtcgccgtagccaacgccgaggatgtc 739
to top
>gb|U02287.1|HVU02287 Hordeum vulgare cultivar NK1558 chitinase gene, complete cds
          Length = 1684

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 293  tgtagcagtcgaggttattcccgtagccgatgccgaagatgtc 335
            |||||||||||||||| || |||||||| | ||||| ||||||
Sbjct: 1536 tgtagcagtcgaggttgttgccgtagccaacgccgaggatgtc 1494
to top
>gb|AC154093.1| Homo sapiens chromosome 13 clone fa0790, complete sequence
          Length = 37001

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 207   cacatccacacacgcacatgca 228
             ||||||||||||||||||||||
Sbjct: 36335 cacatccacacacgcacatgca 36356
to top
>gb|AC124684.3| Mus musculus BAC clone RP24-375D13 from chromosome 1, complete sequence
          Length = 167927

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 208    acatccacacacgcacatgcat 229
              ||||||||||||||||||||||
Sbjct: 115354 acatccacacacgcacatgcat 115375
to top
>emb|AL359649.8| Human DNA sequence from clone RP11-65D24 on chromosome 13 Contains 2
              novel genes, complete sequence
          Length = 144792

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 207    cacatccacacacgcacatgca 228
              ||||||||||||||||||||||
Sbjct: 109684 cacatccacacacgcacatgca 109663
to top
>gb|AC153149.4| Mus musculus BAC clone RP23-176O2 from chromosome 3, complete sequence
          Length = 206540

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 207    cacatccacacacgcacatgca 228
              ||||||||||||||||||||||
Sbjct: 146384 cacatccacacacgcacatgca 146405
to top
>gb|AC084760.2| Gallus gallus clone WAG-65N20, complete sequence
          Length = 109569

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 158   tatttggtcataaaatacttac 179
             ||||||||||||||||||||||
Sbjct: 23660 tatttggtcataaaatacttac 23639
to top
>gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, complete sequence
          Length = 175840

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 207    cacatccacacacgcacatgcataaa 232
              ||||| ||||||||||||||||||||
Sbjct: 137699 cacatacacacacgcacatgcataaa 137724
to top
>gb|AC153644.3| Mus musculus BAC clone RP24-531A1 from 1, complete sequence
          Length = 166988

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 208   acatccacacacgcacatgcat 229
             ||||||||||||||||||||||
Sbjct: 15411 acatccacacacgcacatgcat 15432
to top
>gb|L34211.1|BLYCHI33A Hordeum vulgare chitinase (CHI33) gene, complete cds
          Length = 1779

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 289  tggttgtagcagtcgaggttattcccgtagccga 322
            ||||||||||||||||||||   |||||||||||
Sbjct: 1634 tggttgtagcagtcgaggttgcccccgtagccga 1601
to top
>gb|AC140314.2| Mus musculus BAC clone RP23-395L3 from chromosome 12, complete sequence
          Length = 191322

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 27     ttgcagtcgtctctgcataaa 47
              |||||||||||||||||||||
Sbjct: 155982 ttgcagtcgtctctgcataaa 155962
to top
>emb|AL591393.10| Human DNA sequence from clone RP11-224J22 on chromosome 9 Contains a
             novel gene (FLJ33868) and 2 CpG islands, complete sequence
          Length = 174911

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 170   aaatacttaccaagattatttattt 194
             |||||||||||||| ||||||||||
Sbjct: 80594 aaatacttaccaagtttatttattt 80570
to top
>emb|BX322565.11| Zebrafish DNA sequence from clone CH211-262K18 in linkage group 24,
              complete sequence
          Length = 158981

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 206    tcacatccacacacgcacatgcata 230
              |||||| ||||||||||||||||||
Sbjct: 125189 tcacatacacacacgcacatgcata 125165
to top
>emb|BX294098.11| Zebrafish DNA sequence from clone CH211-254P12 in linkage group 24,
             complete sequence
          Length = 152545

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 206   tcacatccacacacgcacatgcata 230
             |||||| ||||||||||||||||||
Sbjct: 66156 tcacatacacacacgcacatgcata 66180
to top
>gb|AC155311.2| Mus musculus BAC clone RP23-407F7 from chromosome 12, complete sequence
          Length = 166104

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 27     ttgcagtcgtctctgcataaa 47
              |||||||||||||||||||||
Sbjct: 148650 ttgcagtcgtctctgcataaa 148670
to top
>emb|BX294095.13| Zebrafish DNA sequence from clone CH211-248L17 in linkage group 24,
              complete sequence
          Length = 147604

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 206    tcacatccacacacgcacatgcata 230
              |||||| ||||||||||||||||||
Sbjct: 105496 tcacatacacacacgcacatgcata 105472
to top
>ref|NM_197598.1| Oryza sativa (japonica cultivar-group) putative chitinase
           (OSJNBb0015I11.16), mRNA
          Length = 891

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 289 tggttgtagcagtcgaggtt 308
           ||||||||||||||||||||
Sbjct: 863 tggttgtagcagtcgaggtt 844
to top
>ref|NM_197596.1| Oryza sativa (japonica cultivar-group) chitinase
           (OSJNBb0015I11.14), mRNA
          Length = 924

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 289 tggttgtagcagtcgaggtt 308
           ||||||||||||||||||||
Sbjct: 767 tggttgtagcagtcgaggtt 748
to top
>gb|AC166486.5| Mus musculus chromosome 1, clone RP23-187M9, complete sequence
          Length = 187098

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   ccatttatttggtcataaaa 172
             ||||||||||||||||||||
Sbjct: 13104 ccatttatttggtcataaaa 13085
to top
>gb|AC131725.2| Mus musculus BAC clone RP23-129H16 from chromosome 5, complete sequence
          Length = 203437

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 207   cacatccacacacgcacatgcata 230
             ||||| ||||||||||||||||||
Sbjct: 10245 cacatacacacacgcacatgcata 10268
to top
>gb|AC124374.5| Mus musculus BAC clone RP24-567K8 from chromosome 5, complete sequence
          Length = 181395

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 207    cacatccacacacgcacatgcata 230
              ||||| ||||||||||||||||||
Sbjct: 177006 cacatacacacacgcacatgcata 176983
to top
>gb|AC069288.7| Homo sapiens BAC clone RP11-416J17 from 7, complete sequence
          Length = 145709

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    cacatccacacacgcacatg 226
              ||||||||||||||||||||
Sbjct: 136461 cacatccacacacgcacatg 136480
to top
>emb|BX901895.15| Zebrafish DNA sequence from clone CH211-218C11 in linkage group 7,
              complete sequence
          Length = 208436

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     aatatgtttataataaaagg 71
              ||||||||||||||||||||
Sbjct: 125720 aatatgtttataataaaagg 125739
to top
>emb|CR931785.6| Zebrafish DNA sequence from clone DKEY-230N5 in linkage group 7, complete
              sequence
          Length = 196531

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     aatatgtttataataaaagg 71
              ||||||||||||||||||||
Sbjct: 145929 aatatgtttataataaaagg 145948
to top
>gb|AC121591.4| Mus musculus BAC clone RP23-289H3 from 1, complete sequence
          Length = 195393

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 153   ccatttatttggtcataaaa 172
             ||||||||||||||||||||
Sbjct: 12989 ccatttatttggtcataaaa 13008
to top
>emb|CR933541.6| Mouse DNA sequence from clone DN-97M20 on chromosome 11, complete
             sequence
          Length = 176646

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 207   cacatccacacacgcacatgcata 230
             ||||| ||||||||||||||||||
Sbjct: 66957 cacatgcacacacgcacatgcata 66934
to top
>gb|AC158914.4| Mus musculus chromosome 5, clone RP24-249F11, complete sequence
          Length = 155216

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 207    cacatccacacacgcacatgcata 230
              ||||| ||||||||||||||||||
Sbjct: 147813 cacatacacacacgcacatgcata 147836
to top
>emb|AL592044.4| Human DNA sequence from clone RP13-407F1 on chromosome 13, complete
              sequence
          Length = 236130

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    ccaagattatttatttgtgg 198
              ||||||||||||||||||||
Sbjct: 200200 ccaagattatttatttgtgg 200219
to top
>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 312    cccgtagccgatgccgaaga 331
              ||||||||||||||||||||
Sbjct: 399928 cccgtagccgatgccgaaga 399947
to top
>emb|X56787.1|OSLMRNAC O.sativa L. mRNA for endochitinase
          Length = 1186

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 289 tggttgtagcagtcgaggtt 308
           ||||||||||||||||||||
Sbjct: 986 tggttgtagcagtcgaggtt 967
to top
>gb|AY747625.1| Brassica rapa oleosin-like protein mRNA, partial cds
          Length = 813

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  atgtttataataaaaggggg 74
           ||||||||||||||||||||
Sbjct: 624 atgtttataataaaaggggg 643
to top
>emb|AL596185.12| Mouse DNA sequence from clone RP23-172M21 on chromosome 11 Contains the
             5' end of the Centb1 gene for centaurin beta 1, the gene
             for a novel protein similar to protein phosphatase 1
             regulatory (inhibitor) subunit 2 Ppp1r2, a novel gene, the
             Gps2 gene for G protein pathway suppressor 2, the Eif5a
             gene for eukaryotic translation initiation factor 5A, the
             Ybx2 gene for Y box protein 2, the Slc2a4 gene for solute
             carrier family 2 (facilitated glucose transporter) member
             4, a non-muscle cofilin 1 (Cfl1) pseudogene, the Cldn7
             gene for claudin 7, the Rai12 gene for retinoic acid
             induced 12, the Dullard gene for Dullard homolog (Xenopus
             laevis) (novel NLI interacting factor-like phosphatase),
             the gene for novel PHD-finger protein JUNE1, the Dvl2 gene
             for dishevelled 2 dsh homolog (Drosophila), the Acadvl
             gene for acyl-Coenzyme A dehydrogenase very long chain,
             the Dlgh4 gene for discs large homolog 4 (Drosophila), the
             Asgr1 and Asgr2 genes for asialoglycoprotein receptor 1
             and 2, a ribosomal protein L26 (Rpl26) pseudogene, the 5'
             end of the Mgl2 gene for macrophage galactose
             N-acetyl-galactosamine specific lectin 2 and nine CpG
             islands, complete sequence
          Length = 248203

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 207   cacatccacacacgcacatgcata 230
             ||||| ||||||||||||||||||
Sbjct: 74107 cacatgcacacacgcacatgcata 74084
to top
>emb|AL591420.5| Zebrafish DNA sequence from clone BUSM1-221H6 in linkage group 7
             Contains three genes for novel immune-type receptors
             (nitr), complete sequence
          Length = 51019

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    aatatgtttataataaaagg 71
             ||||||||||||||||||||
Sbjct: 25542 aatatgtttataataaaagg 25523
to top
>emb|AL645902.6| Mouse DNA sequence from clone RP23-19I2 on chromosome 11 Contains the
             gene for the likely ortholog of H. sapiens
             phosphoribosylformylglycinamidine synthase (FGAR
             amidotransferase) (PFAS), the gene for a novel protein
             (1500010J02Rik), the Aurkb gene for aurora kinase B, two
             genes for novel proteins (2310047M10Rik and
             1110004B13Rik), a guanine nucleotide binding protein (G
             protein) gamma 5 subunit (Gng5) pseudogene and three CpG
             islands, complete sequence
          Length = 100678

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    tttataataaaagggggcga 77
             ||||||||||||||||||||
Sbjct: 84763 tttataataaaagggggcga 84782
to top
>gb|AC018352.23| Homo sapiens 3 BAC RP11-124O2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 153352

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 213    cacacacgcacatgcataaa 232
              ||||||||||||||||||||
Sbjct: 140880 cacacacgcacatgcataaa 140899
to top
>gb|AC013701.6| Homo sapiens, clone RP11-22C8, complete sequence
          Length = 160275

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 207   cacatccacacacgcacatgcata 230
             ||||| ||||||||||||||||||
Sbjct: 85595 cacatgcacacacgcacatgcata 85572
to top
>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete
              sequence
          Length = 138824

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 289    tggttgtagcagtcgaggtt 308
              ||||||||||||||||||||
Sbjct: 104334 tggttgtagcagtcgaggtt 104315



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   tggttgtagcagtcgaggtt 308
             ||||||||||||||||||||
Sbjct: 89608 tggttgtagcagtcgaggtt 89589
to top
>gb|S37032.1| oleosin napII [rapeseeds, mRNA, 810 nt]
          Length = 810

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  atgtttataataaaaggggg 74
           ||||||||||||||||||||
Sbjct: 614 atgtttataataaaaggggg 633
to top
>gb|DQ328612.1| Brassica napus oleosin-like protein gene, complete cds
          Length = 2105

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 55   atgtttataataaaaggggg 74
            ||||||||||||||||||||
Sbjct: 1765 atgtttataataaaaggggg 1784
to top
>gb|AC161378.2| Mus musculus BAC clone RP23-202A6 from chromosome 16, complete sequence
          Length = 219298

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 202    atcatcacatccacacacgcacatgcat 229
              |||| ||||| |||||||||||||||||
Sbjct: 192642 atcaacacatacacacacgcacatgcat 192615
to top
>gb|AC154429.4| Mus musculus BAC clone RP24-202G18 from chromosome 16, complete sequence
          Length = 170875

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 202    atcatcacatccacacacgcacatgcat 229
              |||| ||||| |||||||||||||||||
Sbjct: 147179 atcaacacatacacacacgcacatgcat 147152
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 289      tggttgtagcagtcgaggtt 308
                ||||||||||||||||||||
Sbjct: 20702882 tggttgtagcagtcgaggtt 20702863



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 289      tggttgtagcagtcgaggtt 308
                ||||||||||||||||||||
Sbjct: 20688156 tggttgtagcagtcgaggtt 20688137
to top
>dbj|AB051579.1| Secale cereale rscc mRNA for seed chitinase-c, complete cds
          Length = 1018

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 292 ttgtagcagtcgaggttattcccgtagccgatgccgaagatgtc 335
           ||||||||||||||||| |  |||||||| | ||||| ||||||
Sbjct: 836 ttgtagcagtcgaggttgtcgccgtagccaacgccgaggatgtc 793
to top
>emb|BX649239.1| Sminthopsis DNA sequence from clone RZPD668-232B10, complete sequence
          Length = 40274

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 207   cacatccacacacgcacatgcata 230
             ||||| ||||||||||||||||||
Sbjct: 25008 cacatacacacacgcacatgcata 24985
to top
>emb|X58000.1|BNOLEOSIN B.napus mRNA for major oleosin, nap-II
          Length = 810

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  atgtttataataaaaggggg 74
           ||||||||||||||||||||
Sbjct: 614 atgtttataataaaaggggg 633
to top
>dbj|AK108949.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-C03, full
           insert sequence
          Length = 979

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 289 tggttgtagcagtcgaggtt 308
           ||||||||||||||||||||
Sbjct: 651 tggttgtagcagtcgaggtt 632
to top
>dbj|AK070067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042L15, full
           insert sequence
          Length = 1073

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 289 tggttgtagcagtcgaggtt 308
           ||||||||||||||||||||
Sbjct: 793 tggttgtagcagtcgaggtt 774
to top
>gb|AF000965.1|AF000965 Poa pratensis chitinase (Chi3) pseudogene sequence
          Length = 1173

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 289  tggttgtagcagtcgaggttattcccgtagccgatgccga 328
            |||||||||||||| ||||| | |||||||| || |||||
Sbjct: 1134 tggttgtagcagtccaggttgtccccgtagctgacgccga 1095
to top
>emb|AL954849.14| Zebrafish DNA sequence from clone DKEY-7N10 in linkage group 7,
             complete sequence
          Length = 162939

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    aatatgtttataataaaagg 71
             ||||||||||||||||||||
Sbjct: 25634 aatatgtttataataaaagg 25615
to top
>gb|AC124225.13| Mus musculus chromosome 16, clone RP23-83P23, complete sequence
          Length = 157891

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 202    atcatcacatccacacacgcacatgcat 229
              |||| ||||| |||||||||||||||||
Sbjct: 147018 atcaacacatacacacacgcacatgcat 147045
to top
>dbj|D16222.1|RICCHT2 Oryza sativa (japonica cultivar-group) Cht-2 gene for endochitinase,
            complete cds
          Length = 2986

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 289  tggttgtagcagtcgaggtt 308
            ||||||||||||||||||||
Sbjct: 2421 tggttgtagcagtcgaggtt 2402
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 289      tggttgtagcagtcgaggtt 308
                ||||||||||||||||||||
Sbjct: 20714154 tggttgtagcagtcgaggtt 20714135



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 289      tggttgtagcagtcgaggtt 308
                ||||||||||||||||||||
Sbjct: 20699428 tggttgtagcagtcgaggtt 20699409
to top
>emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on chromosome X, complete
              sequence
          Length = 201821

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 206    tcacatccacacacgcacatgcataaac 233
              |||||| ||||||| |||||||||||||
Sbjct: 108892 tcacatgcacacacacacatgcataaac 108865
to top
>emb|AL671885.13| Mouse DNA sequence from clone RP23-132C19 on chromosome X, complete
             sequence
          Length = 154019

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 236   aggacccaatcttatgatctcact 259
             |||||||| |||||||||||||||
Sbjct: 84820 aggacccactcttatgatctcact 84843
to top
>emb|AL663064.12| Mouse DNA sequence from clone RP23-12F1 on chromosome X, complete
              sequence
          Length = 220522

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 182    agattatttatttgtgggtg 201
              ||||||||||||||||||||
Sbjct: 154398 agattatttatttgtgggtg 154417
to top
>gb|AC133010.2| Homo sapiens chromosome 3 clone RP13-597L11, complete sequence
          Length = 165036

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    cacacacgcacatgcataaa 232
              ||||||||||||||||||||
Sbjct: 129690 cacacacgcacatgcataaa 129671
to top
>gb|U02286.1|OSU02286 Oryza sativa IR58 chitinase mRNA, complete cds
          Length = 1051

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 289 tggttgtagcagtcgaggtt 308
           ||||||||||||||||||||
Sbjct: 975 tggttgtagcagtcgaggtt 956
to top
>dbj|AB016497.1| Oryza sativa mRNA for chitinase, complete cds
          Length = 923

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 289 tggttgtagcagtcgaggtt 308
           ||||||||||||||||||||
Sbjct: 773 tggttgtagcagtcgaggtt 754


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,541,259
Number of Sequences: 3902068
Number of extensions: 3541259
Number of successful extensions: 71792
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71585
Number of HSP's gapped (non-prelim): 207
length of query: 339
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 317
effective length of database: 17,147,199,772
effective search space: 5435662327724
effective search space used: 5435662327724
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top