Clone Information

BLAST Search Result

Clone Name	rbaet38f11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_189610.2\| Oryza sativa (japonica cultivar-group), mRNA	369	4e-99
2	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	369	4e-99
3	dbj\|AP002486.1\| Oryza sativa (japonica cultivar-group) genomic D...	369	4e-99
4	dbj\|AK110554.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	369	4e-99
5	dbj\|AK104360.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	369	4e-99
6	dbj\|AK098922.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	369	4e-99
7	dbj\|AK065320.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	369	4e-99
8	dbj\|AK065131.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	369	4e-99
9	dbj\|AK061343.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	369	4e-99
10	gb\|AC157319.2\| Zea mays clone ZMMBBb-136E2, complete sequence	337	2e-89
11	gb\|AY110165.1\| Zea mays CL20454_1 mRNA sequence	337	2e-89
12	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	60	5e-06
13	dbj\|AP004571.3\| Oryza sativa (japonica cultivar-group) genomic D...	60	5e-06
14	emb\|AM039952.1\| Xanthomonas campestris pv. vesicatoria complete ...	44	0.32
15	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.32
16	dbj\|AP003868.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.32
17	gb\|AC164954.3\| Culex pipiens quinquefasciatus, clone Culex pipie...	42	1.3
18	ref\|XM_780646.1\| PREDICTED: Strongylocentrotus purpuratus simila...	42	1.3
19	ref\|NM_179608.1\| Arabidopsis thaliana unknown protein AT2G05810 ...	40	4.9
20	ref\|NM_126594.3\| Arabidopsis thaliana unknown protein AT2G05810 ...	40	4.9
21	ref\|NM_117584.1\| Arabidopsis thaliana unknown protein AT4G14970 ...	40	4.9
22	ref\|XM_480860.1\| Oryza sativa (japonica cultivar-group), mRNA	40	4.9
23	gb\|BT015173.1\| Arabidopsis thaliana At2g05810 gene, complete cds	40	4.9
24	emb\|Z97337.2\|ATFCA2 Arabidopsis thaliana DNA chromosome 4, ESSA ...	40	4.9
25	gb\|AY099770.1\| Arabidopsis thaliana unknown protein (At2g05810) ...	40	4.9
26	gb\|AC006555.4\| Arabidopsis thaliana chromosome 2 clone T17C22 ma...	40	4.9
27	gb\|AF439839.1\|AF439839 Arabidopsis thaliana At2g05810/T17C22.4 m...	40	4.9
28	emb\|BX826737.1\|CNS0A392 Arabidopsis thaliana Full-length cDNA Co...	40	4.9
29	gb\|AC140186.3\| Mus musculus BAC clone RP24-363G9 from chromosome...	40	4.9
30	dbj\|AP004705.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.9
31	dbj\|AP004648.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.9
32	emb\|AL161540.2\|ATCHRIV40 Arabidopsis thaliana DNA chromosome 4, ...	40	4.9
33	gb\|AE009442.1\| Xylella fastidiosa Temecula1, complete genome	40	4.9
34	gb\|AC168019.4\| Culex pipiens quinquefasciatus, clone Culex pipie...	40	4.9
35	dbj\|D16207.1\|RERAG Rhodococcus rhodochrous amidase gene	40	4.9

>ref|NM_189610.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1581

 Score =  369 bits (186), Expect = 4e-99
 Identities = 219/230 (95%)
 Strand = Plus / Minus

                                                                        
Query: 141  tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 200
            |||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||
Sbjct: 1330 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 1271

                                                                        
Query: 201  gctggcgagcatcctggtgccgtccagcggcagcggcgccttgaggatgacgacggaggc 260
            ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1270 gctggcgagcatccgcgtgccgtcgagcggcagcggcgccttgaggatgacgacggaggc 1211

                                                                        
Query: 261  gatgaagtcgttgttgacgagcggtccggcgaacatgggcgggccgaagccgtagtccac 320
            |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 1210 gatgaagtcgttgttgacgagcgggccggcgaacttgggcgggccgaagccgtagtccac 1151

                                                              
Query: 321  gtcggagaaccccagcttgctccagtcggagacgtagatggactcgtagt 370
             |||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1150 ctcggcgaacccgagcttgctccagtcggagacgtagatggactcgtagt 1101

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  369 bits (186), Expect = 4e-99
 Identities = 219/230 (95%)
 Strand = Plus / Minus

                                                                           
Query: 141     tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 200
               |||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||
Sbjct: 4531603 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 4531544

                                                                           
Query: 201     gctggcgagcatcctggtgccgtccagcggcagcggcgccttgaggatgacgacggaggc 260
               ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4531543 gctggcgagcatccgcgtgccgtcgagcggcagcggcgccttgaggatgacgacggaggc 4531484

                                                                           
Query: 261     gatgaagtcgttgttgacgagcggtccggcgaacatgggcgggccgaagccgtagtccac 320
               |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 4531483 gatgaagtcgttgttgacgagcgggccggcgaacttgggcgggccgaagccgtagtccac 4531424

                                                                 
Query: 321     gtcggagaaccccagcttgctccagtcggagacgtagatggactcgtagt 370
                |||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4531423 ctcggcgaacccgagcttgctccagtcggagacgtagatggactcgtagt 4531374

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>dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0510F03
          Length = 149699

 Score =  369 bits (186), Expect = 4e-99
 Identities = 219/230 (95%)
 Strand = Plus / Minus

                                                                         
Query: 141   tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 200
             |||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||
Sbjct: 66290 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 66231

                                                                         
Query: 201   gctggcgagcatcctggtgccgtccagcggcagcggcgccttgaggatgacgacggaggc 260
             ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 66230 gctggcgagcatccgcgtgccgtcgagcggcagcggcgccttgaggatgacgacggaggc 66171

                                                                         
Query: 261   gatgaagtcgttgttgacgagcggtccggcgaacatgggcgggccgaagccgtagtccac 320
             |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 66170 gatgaagtcgttgttgacgagcgggccggcgaacttgggcgggccgaagccgtagtccac 66111

                                                               
Query: 321   gtcggagaaccccagcttgctccagtcggagacgtagatggactcgtagt 370
              |||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 66110 ctcggcgaacccgagcttgctccagtcggagacgtagatggactcgtagt 66061

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>dbj|AK110554.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-C05, full
           insert sequence
          Length = 1033

 Score =  369 bits (186), Expect = 4e-99
 Identities = 219/230 (95%)
 Strand = Plus / Plus

                                                                       
Query: 141 tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 200
           |||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||
Sbjct: 52  tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 111

                                                                       
Query: 201 gctggcgagcatcctggtgccgtccagcggcagcggcgccttgaggatgacgacggaggc 260
           ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 112 gctggcgagcatccgcgtgccgtcgagcggcagcggcgccttgaggatgacgacggaggc 171

                                                                       
Query: 261 gatgaagtcgttgttgacgagcggtccggcgaacatgggcgggccgaagccgtagtccac 320
           |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 172 gatgaagtcgttgttgacgagcgggccggcgaacttgggcgggccgaagccgtagtccac 231

                                                             
Query: 321 gtcggagaaccccagcttgctccagtcggagacgtagatggactcgtagt 370
            |||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 232 ctcggcgaacccgagcttgctccagtcggagacgtagatggactcgtagt 281

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>dbj|AK104360.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C03, full
           insert sequence
          Length = 1097

 Score =  369 bits (186), Expect = 4e-99
 Identities = 219/230 (95%)
 Strand = Plus / Minus

                                                                       
Query: 141 tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 200
           |||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||
Sbjct: 841 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 782

                                                                       
Query: 201 gctggcgagcatcctggtgccgtccagcggcagcggcgccttgaggatgacgacggaggc 260
           ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 781 gctggcgagcatccgcgtgccgtcgagcggcagcggcgccttgaggatgacgacggaggc 722

                                                                       
Query: 261 gatgaagtcgttgttgacgagcggtccggcgaacatgggcgggccgaagccgtagtccac 320
           |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 721 gatgaagtcgttgttgacgagcgggccggcgaacttgggcgggccgaagccgtagtccac 662

                                                             
Query: 321 gtcggagaaccccagcttgctccagtcggagacgtagatggactcgtagt 370
            |||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctcggcgaacccgagcttgctccagtcggagacgtagatggactcgtagt 612

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>dbj|AK098922.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O23, full
            insert sequence
          Length = 1581

 Score =  369 bits (186), Expect = 4e-99
 Identities = 219/230 (95%)
 Strand = Plus / Minus

                                                                        
Query: 141  tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 200
            |||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||
Sbjct: 1330 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 1271

                                                                        
Query: 201  gctggcgagcatcctggtgccgtccagcggcagcggcgccttgaggatgacgacggaggc 260
            ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1270 gctggcgagcatccgcgtgccgtcgagcggcagcggcgccttgaggatgacgacggaggc 1211

                                                                        
Query: 261  gatgaagtcgttgttgacgagcggtccggcgaacatgggcgggccgaagccgtagtccac 320
            |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 1210 gatgaagtcgttgttgacgagcgggccggcgaacttgggcgggccgaagccgtagtccac 1151

                                                              
Query: 321  gtcggagaaccccagcttgctccagtcggagacgtagatggactcgtagt 370
             |||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1150 ctcggcgaacccgagcttgctccagtcggagacgtagatggactcgtagt 1101

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>dbj|AK065320.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P13, full
            insert sequence
          Length = 2131

 Score =  369 bits (186), Expect = 4e-99
 Identities = 219/230 (95%)
 Strand = Plus / Minus

                                                                        
Query: 141  tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 200
            |||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||
Sbjct: 1872 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 1813

                                                                        
Query: 201  gctggcgagcatcctggtgccgtccagcggcagcggcgccttgaggatgacgacggaggc 260
            ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1812 gctggcgagcatccgcgtgccgtcgagcggcagcggcgccttgaggatgacgacggaggc 1753

                                                                        
Query: 261  gatgaagtcgttgttgacgagcggtccggcgaacatgggcgggccgaagccgtagtccac 320
            |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 1752 gatgaagtcgttgttgacgagcgggccggcgaacttgggcgggccgaagccgtagtccac 1693

                                                              
Query: 321  gtcggagaaccccagcttgctccagtcggagacgtagatggactcgtagt 370
             |||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1692 ctcggcgaacccgagcttgctccagtcggagacgtagatggactcgtagt 1643

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>dbj|AK065131.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P14, full
            insert sequence
          Length = 1593

 Score =  369 bits (186), Expect = 4e-99
 Identities = 219/230 (95%)
 Strand = Plus / Minus

                                                                        
Query: 141  tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 200
            |||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||
Sbjct: 1334 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 1275

                                                                        
Query: 201  gctggcgagcatcctggtgccgtccagcggcagcggcgccttgaggatgacgacggaggc 260
            ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1274 gctggcgagcatccgcgtgccgtcgagcggcagcggcgccttgaggatgacgacggaggc 1215

                                                                        
Query: 261  gatgaagtcgttgttgacgagcggtccggcgaacatgggcgggccgaagccgtagtccac 320
            |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 1214 gatgaagtcgttgttgacgagcgggccggcgaacttgggcgggccgaagccgtagtccac 1155

                                                              
Query: 321  gtcggagaaccccagcttgctccagtcggagacgtagatggactcgtagt 370
             |||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1154 ctcggcgaacccgagcttgctccagtcggagacgtagatggactcgtagt 1105

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>dbj|AK061343.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-E05, full
           insert sequence
          Length = 1097

 Score =  369 bits (186), Expect = 4e-99
 Identities = 219/230 (95%)
 Strand = Plus / Minus

                                                                       
Query: 141 tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 200
           |||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||
Sbjct: 841 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 782

                                                                       
Query: 201 gctggcgagcatcctggtgccgtccagcggcagcggcgccttgaggatgacgacggaggc 260
           ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 781 gctggcgagcatccgcgtgccgtcgagcggcagcggcgccttgaggatgacgacggaggc 722

                                                                       
Query: 261 gatgaagtcgttgttgacgagcggtccggcgaacatgggcgggccgaagccgtagtccac 320
           |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 721 gatgaagtcgttgttgacgagcgggccggcgaacttgggcgggccgaagccgtagtccac 662

                                                             
Query: 321 gtcggagaaccccagcttgctccagtcggagacgtagatggactcgtagt 370
            |||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctcggcgaacccgagcttgctccagtcggagacgtagatggactcgtagt 612

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>gb|AC157319.2| Zea mays clone ZMMBBb-136E2, complete sequence
          Length = 138186

 Score =  337 bits (170), Expect = 2e-89
 Identities = 212/226 (93%)
 Strand = Plus / Plus

                                                                          
Query: 145    ggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgcagctg 204
              |||||||| ||||||||||| |||||||||||||  ||||| ||||||||||||||||||
Sbjct: 109542 ggcaggtcttccttcatgccacgggcgaactcctcggagtgttccttggtgacgcagctg 109601

                                                                          
Query: 205    gcgagcatcctggtgccgtccagcggcagcggcgccttgaggatgacgacggaggcgatg 264
              |||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||
Sbjct: 109602 gcgagcatcctggtgccgtcgagcgggagcggcgccttgaggaagacgacggaggcgatg 109661

                                                                          
Query: 265    aagtcgttgttgacgagcggtccggcgaacatgggcgggccgaagccgtagtccacgtcg 324
              |||||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||
Sbjct: 109662 aagtcgttgttgacgagcgggccggcgaagatgggcgggccgaagccgtagtcgacctcg 109721

                                                            
Query: 325    gagaaccccagcttgctccagtcggagacgtagatggactcgtagt 370
              ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 109722 gagaagccgagcttgctccagtcggagacgtagatggactcgtagt 109767

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>gb|AY110165.1| Zea mays CL20454_1 mRNA sequence
          Length = 1000

 Score =  337 bits (170), Expect = 2e-89
 Identities = 212/226 (93%)
 Strand = Plus / Minus

                                                                       
Query: 145 ggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgcagctg 204
           |||||||| ||||||||||| |||||||||||||  ||||| ||||||||||||||||||
Sbjct: 735 ggcaggtcttccttcatgccacgggcgaactcctcggagtgttccttggtgacgcagctg 676

                                                                       
Query: 205 gcgagcatcctggtgccgtccagcggcagcggcgccttgaggatgacgacggaggcgatg 264
           |||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||
Sbjct: 675 gcgagcatcctggtgccgtcgagcgggagcggcgccttgaggaagacgacggaggcgatg 616

                                                                       
Query: 265 aagtcgttgttgacgagcggtccggcgaacatgggcgggccgaagccgtagtccacgtcg 324
           |||||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||
Sbjct: 615 aagtcgttgttgacgagcgggccggcgaagatgggcgggccgaagccgtagtcgacctcg 556

                                                         
Query: 325 gagaaccccagcttgctccagtcggagacgtagatggactcgtagt 370
           ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 555 gagaagccgagcttgctccagtcggagacgtagatggactcgtagt 510

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                            
Query: 310      ccgtagtccacgtcggagaaccccagcttgctccagtcggagacgtagatggactcgtag 369
                |||||||| ||||||  |||||| |||||||||||||| || ||||| | ||||||||||
Sbjct: 22996000 ccgtagtcgacgtcgttgaacccgagcttgctccagtccgacacgtacacggactcgtag 22996059

                  
Query: 370      tc 371
                ||
Sbjct: 22996060 tc 22996061



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                          
Query: 183      gtgctccttggtgacgcagctggcgagcatcctggtgccgtccagcggcagcggcgcc 240
                ||||||||||||||||||||| || |||| ||  |||||| | ||||||  |||||||
Sbjct: 22995873 gtgctccttggtgacgcagctcgccagcagccgcgtgccggcgagcggcgccggcgcc 22995930

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>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0652A05
          Length = 150455

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                         
Query: 310   ccgtagtccacgtcggagaaccccagcttgctccagtcggagacgtagatggactcgtag 369
             |||||||| ||||||  |||||| |||||||||||||| || ||||| | ||||||||||
Sbjct: 62544 ccgtagtcgacgtcgttgaacccgagcttgctccagtccgacacgtacacggactcgtag 62603

               
Query: 370   tc 371
             ||
Sbjct: 62604 tc 62605



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                       
Query: 183   gtgctccttggtgacgcagctggcgagcatcctggtgccgtccagcggcagcggcgcc 240
             ||||||||||||||||||||| || |||| ||  |||||| | ||||||  |||||||
Sbjct: 62417 gtgctccttggtgacgcagctcgccagcagccgcgtgccggcgagcggcgccggcgcc 62474

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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 191     tggtgacgcagctggcgagcatcctggtgc 220
               ||||| |||||||||||| |||||||||||
Sbjct: 1944020 tggtgccgcagctggcgaccatcctggtgc 1944049

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 105      agattttctccggtccagcaaa 126
                ||||||||||||||||||||||
Sbjct: 20923175 agattttctccggtccagcaaa 20923196



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 216     ggtgccgtccagcggcagcg 235
               ||||||||||||||||||||
Sbjct: 8267290 ggtgccgtccagcggcagcg 8267309

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>dbj|AP003868.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1111_B08
          Length = 131184

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 105    agattttctccggtccagcaaa 126
              ||||||||||||||||||||||
Sbjct: 101476 agattttctccggtccagcaaa 101497

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>gb|AC164954.3| Culex pipiens quinquefasciatus, clone Culex pipiens
              quinquefasciatus-3940128D9, complete sequence
          Length = 128585

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 137    tcgctcatggcaggtcctcct 157
              |||||||||||||||||||||
Sbjct: 110083 tcgctcatggcaggtcctcct 110103

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>ref|XM_780646.1| PREDICTED: Strongylocentrotus purpuratus similar to
           phosphatidylinositol-4-phosphate 5-kinase, type II, beta
           (LOC580595), mRNA
          Length = 1140

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 109 tttctccggtccagcaaagggaagt 133
           ||||||||||||||| |||||||||
Sbjct: 295 tttctccggtccagcgaagggaagt 319

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>ref|NM_179608.1| Arabidopsis thaliana unknown protein AT2G05810 transcript variant
            AT2G05810.2 mRNA, complete cds
          Length = 2015

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 251  cgacggaggcgatgaagtcgttgttgac 278
            |||||||||||  |||||||||||||||
Sbjct: 1607 cgacggaggcggcgaagtcgttgttgac 1634

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>ref|NM_126594.3| Arabidopsis thaliana unknown protein AT2G05810 transcript variant
            AT2G05810.1 mRNA, complete cds
          Length = 2282

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 251  cgacggaggcgatgaagtcgttgttgac 278
            |||||||||||  |||||||||||||||
Sbjct: 1607 cgacggaggcggcgaagtcgttgttgac 1634

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>ref|NM_117584.1| Arabidopsis thaliana unknown protein AT4G14970 mRNA, complete cds
          Length = 3861

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 tgaggatgacgacggaggcg 261
           ||||||||||||||||||||
Sbjct: 51  tgaggatgacgacggaggcg 32

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>ref|XM_480860.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 456

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 216 ggtgccgtccagcggcagcg 235
           ||||||||||||||||||||
Sbjct: 296 ggtgccgtccagcggcagcg 315

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>gb|BT015173.1| Arabidopsis thaliana At2g05810 gene, complete cds
          Length = 1743

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 251  cgacggaggcgatgaagtcgttgttgac 278
            |||||||||||  |||||||||||||||
Sbjct: 1415 cgacggaggcggcgaagtcgttgttgac 1442

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>emb|Z97337.2|ATFCA2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 2
          Length = 202860

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    tgaggatgacgacggaggcg 261
              ||||||||||||||||||||
Sbjct: 118972 tgaggatgacgacggaggcg 118953

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>gb|AY099770.1| Arabidopsis thaliana unknown protein (At2g05810) mRNA, complete cds
          Length = 2109

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 251  cgacggaggcgatgaagtcgttgttgac 278
            |||||||||||  |||||||||||||||
Sbjct: 1462 cgacggaggcggcgaagtcgttgttgac 1489

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>gb|AC006555.4| Arabidopsis thaliana chromosome 2 clone T17C22 map ve013, complete
             sequence
          Length = 29078

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 251   cgacggaggcgatgaagtcgttgttgac 278
             |||||||||||  |||||||||||||||
Sbjct: 19488 cgacggaggcggcgaagtcgttgttgac 19461

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>gb|AF439839.1|AF439839 Arabidopsis thaliana At2g05810/T17C22.4 mRNA sequence
          Length = 1870

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 251  cgacggaggcgatgaagtcgttgttgac 278
            |||||||||||  |||||||||||||||
Sbjct: 1586 cgacggaggcggcgaagtcgttgttgac 1613

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>emb|BX826737.1|CNS0A392 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB59ZF06 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1823

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 251 cgacggaggcgatgaagtcgttgttgac 278
           |||||||||||  |||||||||||||||
Sbjct: 284 cgacggaggcggcgaagtcgttgttgac 257

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>gb|AC140186.3| Mus musculus BAC clone RP24-363G9 from chromosome 16, complete sequence
          Length = 139767

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   agctggcgagcatcctggtg 219
             ||||||||||||||||||||
Sbjct: 30459 agctggcgagcatcctggtg 30478

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>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0682A06
          Length = 142023

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 216  ggtgccgtccagcggcagcg 235
            ||||||||||||||||||||
Sbjct: 7399 ggtgccgtccagcggcagcg 7418

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>dbj|AP004648.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1449_H02
          Length = 117860

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   ggtgccgtccagcggcagcg 235
             ||||||||||||||||||||
Sbjct: 99972 ggtgccgtccagcggcagcg 99991

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>emb|AL161540.2|ATCHRIV40 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 40
          Length = 197405

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   tgaggatgacgacggaggcg 261
             ||||||||||||||||||||
Sbjct: 64426 tgaggatgacgacggaggcg 64407

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>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 57      cagcaacgatatcaaccaaacaac 80
               |||||||| |||||||||||||||
Sbjct: 2431910 cagcaacgttatcaaccaaacaac 2431933

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>gb|AC168019.4| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940127D9, complete sequence
          Length = 102832

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    atcagcagctccacgacgcg 103
             ||||||||||||||||||||
Sbjct: 14131 atcagcagctccacgacgcg 14150

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>dbj|D16207.1|RERAG Rhodococcus rhodochrous amidase gene
          Length = 1958

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 cgtccagcggcagcggcgcc 240
           ||||||||||||||||||||
Sbjct: 728 cgtccagcggcagcggcgcc 747


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,259,240
Number of Sequences: 3902068
Number of extensions: 2259240
Number of successful extensions: 47291
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47053
Number of HSP's gapped (non-prelim): 238
length of query: 371
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 349
effective length of database: 17,147,199,772
effective search space: 5984372720428
effective search space used: 5984372720428
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result