| Clone Name | rbaet38d08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189610.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1581 Score = 123 bits (62), Expect = 4e-25 Identities = 71/74 (95%) Strand = Plus / Minus Query: 297 tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 356 |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| Sbjct: 1330 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 1271 Query: 357 gctggcgagcatcc 370 |||||||||||||| Sbjct: 1270 gctggcgagcatcc 1257
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 123 bits (62), Expect = 4e-25 Identities = 71/74 (95%) Strand = Plus / Minus Query: 297 tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 356 |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| Sbjct: 4531603 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 4531544 Query: 357 gctggcgagcatcc 370 |||||||||||||| Sbjct: 4531543 gctggcgagcatcc 4531530
>dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0510F03 Length = 149699 Score = 123 bits (62), Expect = 4e-25 Identities = 71/74 (95%) Strand = Plus / Minus Query: 297 tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 356 |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| Sbjct: 66290 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 66231 Query: 357 gctggcgagcatcc 370 |||||||||||||| Sbjct: 66230 gctggcgagcatcc 66217
>dbj|AK110554.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-C05, full insert sequence Length = 1033 Score = 123 bits (62), Expect = 4e-25 Identities = 71/74 (95%) Strand = Plus / Plus Query: 297 tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 356 |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| Sbjct: 52 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 111 Query: 357 gctggcgagcatcc 370 |||||||||||||| Sbjct: 112 gctggcgagcatcc 125
>dbj|AK104360.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C03, full insert sequence Length = 1097 Score = 123 bits (62), Expect = 4e-25 Identities = 71/74 (95%) Strand = Plus / Minus Query: 297 tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 356 |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| Sbjct: 841 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 782 Query: 357 gctggcgagcatcc 370 |||||||||||||| Sbjct: 781 gctggcgagcatcc 768
>dbj|AK098922.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O23, full insert sequence Length = 1581 Score = 123 bits (62), Expect = 4e-25 Identities = 71/74 (95%) Strand = Plus / Minus Query: 297 tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 356 |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| Sbjct: 1330 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 1271 Query: 357 gctggcgagcatcc 370 |||||||||||||| Sbjct: 1270 gctggcgagcatcc 1257
>dbj|AK065320.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P13, full insert sequence Length = 2131 Score = 123 bits (62), Expect = 4e-25 Identities = 71/74 (95%) Strand = Plus / Minus Query: 297 tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 356 |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| Sbjct: 1872 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 1813 Query: 357 gctggcgagcatcc 370 |||||||||||||| Sbjct: 1812 gctggcgagcatcc 1799
>dbj|AK065131.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P14, full insert sequence Length = 1593 Score = 123 bits (62), Expect = 4e-25 Identities = 71/74 (95%) Strand = Plus / Minus Query: 297 tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 356 |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| Sbjct: 1334 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 1275 Query: 357 gctggcgagcatcc 370 |||||||||||||| Sbjct: 1274 gctggcgagcatcc 1261
>dbj|AK061343.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-E05, full insert sequence Length = 1097 Score = 123 bits (62), Expect = 4e-25 Identities = 71/74 (95%) Strand = Plus / Minus Query: 297 tcatggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgca 356 |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| Sbjct: 841 tcatggcaggtcctccttcatgccgcggacgaactcctccgagtgttccttggtgacgca 782 Query: 357 gctggcgagcatcc 370 |||||||||||||| Sbjct: 781 gctggcgagcatcc 768
>gb|AC157319.2| Zea mays clone ZMMBBb-136E2, complete sequence Length = 138186 Score = 101 bits (51), Expect = 2e-18 Identities = 66/71 (92%) Strand = Plus / Plus Query: 301 ggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgcagctg 360 |||||||| ||||||||||| ||||||||||||| ||||| |||||||||||||||||| Sbjct: 109542 ggcaggtcttccttcatgccacgggcgaactcctcggagtgttccttggtgacgcagctg 109601 Query: 361 gcgagcatcct 371 ||||||||||| Sbjct: 109602 gcgagcatcct 109612
>gb|AY110165.1| Zea mays CL20454_1 mRNA sequence Length = 1000 Score = 101 bits (51), Expect = 2e-18 Identities = 66/71 (92%) Strand = Plus / Minus Query: 301 ggcaggtcctccttcatgccgcgggcgaactcctgcgagtgctccttggtgacgcagctg 360 |||||||| ||||||||||| ||||||||||||| ||||| |||||||||||||||||| Sbjct: 735 ggcaggtcttccttcatgccacgggcgaactcctcggagtgttccttggtgacgcagctg 676 Query: 361 gcgagcatcct 371 ||||||||||| Sbjct: 675 gcgagcatcct 665
>gb|AC145589.3| Mus musculus BAC clone RP24-174M10 from chromosome Y, complete sequence Length = 152506 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 43 aggtatatatcatttttattgt 64 |||||||||||||||||||||| Sbjct: 110711 aggtatatatcatttttattgt 110732
>gb|AC147621.3| Mus musculus BAC clone RP24-315M14 from chromosome Y, complete sequence Length = 166529 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 43 aggtatatatcatttttattgt 64 |||||||||||||||||||||| Sbjct: 3538 aggtatatatcatttttattgt 3559
>gb|AC164954.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940128D9, complete sequence Length = 128585 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 tcgctcatggcaggtcctcct 313 ||||||||||||||||||||| Sbjct: 110083 tcgctcatggcaggtcctcct 110103
>gb|AC125174.3| Mus musculus BAC clone RP24-544G11 from chromosome 16, complete sequence Length = 196646 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 30 tataatcaaatacaggtatatatca 54 ||||| ||||||||||||||||||| Sbjct: 68309 tataaccaaatacaggtatatatca 68285
>ref|XM_780646.1| PREDICTED: Strongylocentrotus purpuratus similar to phosphatidylinositol-4-phosphate 5-kinase, type II, beta (LOC580595), mRNA Length = 1140 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 265 tttctccggtccagcaaagggaagt 289 ||||||||||||||| ||||||||| Sbjct: 295 tttctccggtccagcgaagggaagt 319
>gb|AC090095.7| Homo sapiens, clone RP11-296C13, complete sequence Length = 194074 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 34 atcaaatacaggtatatatcatttt 58 ||||||||||||||||||| ||||| Sbjct: 26841 atcaaatacaggtatatattatttt 26865
>gb|AC099310.1| Drosophila melanogaster, chromosome 3R, region 94D-94D, BAC clone BACR05G05, complete sequence Length = 163979 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 171 agcagcagtacaccaaaacag 191 ||||||||||||||||||||| Sbjct: 137142 agcagcagtacaccaaaacag 137122
>gb|AC018443.9|AC018443 Homo sapiens chromosome 8, clone RP11-674A24, complete sequence Length = 199810 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 34 atcaaatacaggtatatatcatttt 58 ||||||||||||||||||| ||||| Sbjct: 59836 atcaaatacaggtatatattatttt 59860
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 339 gtgctccttggtgacgcagct 359 ||||||||||||||||||||| Sbjct: 22995873 gtgctccttggtgacgcagct 22995893
>gb|AC009846.9|AC009846 Drosophila melanogaster, chromosome 3R, region 94C-94D, BAC clone BACR23F10, complete sequence Length = 164038 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 agcagcagtacaccaaaacag 191 ||||||||||||||||||||| Sbjct: 147704 agcagcagtacaccaaaacag 147724
>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0652A05 Length = 150455 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 339 gtgctccttggtgacgcagct 359 ||||||||||||||||||||| Sbjct: 62417 gtgctccttggtgacgcagct 62437
>gb|AE003740.3| Drosophila melanogaster chromosome 3R, section 78 of 118 of the complete sequence Length = 234378 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 agcagcagtacaccaaaacag 191 ||||||||||||||||||||| Sbjct: 134355 agcagcagtacaccaaaacag 134375
>gb|BT001707.1| Drosophila melanogaster RE66017 full insert cDNA Length = 3461 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 171 agcagcagtacaccaaaacag 191 ||||||||||||||||||||| Sbjct: 793 agcagcagtacaccaaaacag 773
>gb|AC101776.7| Mus musculus chromosome 7, clone RP24-118K20, complete sequence Length = 177972 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 ggtatatatcatttttattg 63 |||||||||||||||||||| Sbjct: 46231 ggtatatatcatttttattg 46250
>gb|AC132902.9| Mus musculus chromosome 13, clone RP24-286O14, complete sequence Length = 160759 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 tatatcatttttattgtctc 67 |||||||||||||||||||| Sbjct: 99179 tatatcatttttattgtctc 99198
>gb|AC129605.4| Mus musculus BAC clone RP23-121N17 from chromosome 7, complete sequence Length = 232568 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 ggtatatatcatttttattg 63 |||||||||||||||||||| Sbjct: 4419 ggtatatatcatttttattg 4400
>emb|CR759816.16| Zebrafish DNA sequence from clone CH211-241C24 in linkage group 7, complete sequence Length = 95674 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 catcaatcaaatataatcaa 38 |||||||||||||||||||| Sbjct: 36439 catcaatcaaatataatcaa 36420
>emb|AL773507.7| Mouse DNA sequence from clone RP23-322E14 on chromosome 4 Contains a phospholipase A2, group XIIA (Pla2g12) pseudogene, complete sequence Length = 200646 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 aatataatcaaatacaggtatata 51 |||||||||||| ||||||||||| Sbjct: 71470 aatataatcaaacacaggtatata 71447
>gb|AC121342.6| Homo sapiens X BAC RP11-86A5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 118301 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gtatatatcatttttattgt 64 |||||||||||||||||||| Sbjct: 43827 gtatatatcatttttattgt 43846
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 attttctccggtccagcaaa 282 |||||||||||||||||||| Sbjct: 20923177 attttctccggtccagcaaa 20923196
>dbj|AP003868.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1111_B08 Length = 131184 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 attttctccggtccagcaaa 282 |||||||||||||||||||| Sbjct: 101478 attttctccggtccagcaaa 101497
>gb|AC154417.2| Mus musculus BAC clone RP23-169H21 from 13, complete sequence Length = 233984 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 tatatcatttttattgtctc 67 |||||||||||||||||||| Sbjct: 205876 tatatcatttttattgtctc 205857
>emb|AL109662.3|CNS018OU Human chromosome 14 DNA sequence BAC R-1053O12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 168176 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 aaatataatcaaatacaggtatat 50 ||||||||| |||||||||||||| Sbjct: 124677 aaatataatgaaatacaggtatat 124654
>emb|BX510915.23| Zebrafish DNA sequence from clone DKEY-24M12 in linkage group 21, complete sequence Length = 253718 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 aaatataatcaaatacaggt 46 |||||||||||||||||||| Sbjct: 8378 aaatataatcaaatacaggt 8359
>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome Length = 2519802 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 213 cagcaacgatatcaaccaaacaac 236 |||||||| ||||||||||||||| Sbjct: 2431910 cagcaacgttatcaaccaaacaac 2431933
>gb|AC168019.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940127D9, complete sequence Length = 102832 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 atcagcagctccacgacgcg 259 |||||||||||||||||||| Sbjct: 14131 atcagcagctccacgacgcg 14150 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,886,884 Number of Sequences: 3902068 Number of extensions: 3886884 Number of successful extensions: 86029 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85867 Number of HSP's gapped (non-prelim): 162 length of query: 371 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 349 effective length of database: 17,147,199,772 effective search space: 5984372720428 effective search space used: 5984372720428 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)