ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet38c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 47 3e-05
2APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 39 0.004
3DSH_DROME (P51140) Segment polarity protein dishevelled 29 5.9
4LRFN4_MOUSE (Q80XU8) Leucine-rich repeat and fibronectin type-II... 28 7.7
5FAD6E_BRAJU (Q39287) Omega-6 fatty acid desaturase, endoplasmic ... 28 7.7

>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -2

Query: 427 YNLITLITEHPEAAGFKDVASACCGGGRLRAQTWCSPNAT-YCANRNDHVYWDEVHGTQ 254
           Y +I+ + E P A GF++    CC  G L A   C  + +  C N + +++WD VH TQ
Sbjct: 456 YTIISQMLETPAAYGFEETKKPCCKTGLLSAGALCKKSTSKICPNTSSYLFWDGVHPTQ 514



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>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -2

Query: 436 GSSYNLITLITEHPEAAGFKDVASACCGGGRLRAQTWCSPNA-TYCANRNDHVYWDEVHG 260
           G  Y++ + + E PE  GF+++   CC  G  +   +C        +N + +++WD +H 
Sbjct: 370 GDIYSIFSKMLESPEDYGFEEIKKPCCKIGLTKGGVFCKERTLKNMSNASSYLFWDGLHP 429

Query: 259 TQ 254
           +Q
Sbjct: 430 SQ 431



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>DSH_DROME (P51140) Segment polarity protein dishevelled|
          Length = 623

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 311 HLLRQSQRPCVLGRGAWHPGHLQQGRQGH 225
           +++ + + P +LGRG  HP  L  G  GH
Sbjct: 474 YVVNEERNPNLLGRGHLHPHQLPHGHGGH 502



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>LRFN4_MOUSE (Q80XU8) Leucine-rich repeat and fibronectin type-III|
           domain-containing protein 4 precursor
          Length = 636

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 20/88 (22%), Positives = 34/88 (38%)
 Frame = +3

Query: 30  FYCISIDPQKESKRRVSTSFLLLSIKSKLTTDGGRAIMHRSPI*EETSCLKLMGAAKPSF 209
           + CI+ +P  E+  RV    L L      + +GGR                +  +A+ + 
Sbjct: 349 YTCIATNPAGEATARVELRVLALPHGGNTSAEGGR-----------PGPSDIAASARTAA 397

Query: 210 TGAAKMALAPLLEVAWVPCTSSQYTWSL 293
            G   +   P ++V  V  TS   +W L
Sbjct: 398 EGEGTLESEPAVQVTEVTATSGLVSWGL 425



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>FAD6E_BRAJU (Q39287) Omega-6 fatty acid desaturase, endoplasmic reticulum (EC|
           1.14.19.-) (Delta-12 desaturase)
          Length = 384

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 126 GGRAIMHRSPI*EETSCLKLMGAAKPSFT-GAAKMALAPLLEVAWVPCTSSQYTWSLRLA 302
           GGR  +  SP   ET  LK +    P FT G  K A+ P      +P + S   W + +A
Sbjct: 4   GGRMQVSPSPKKSETDTLKRVPCETPPFTVGELKKAIPPHCFKRSIPRSFSYLIWDIIVA 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,365,563
Number of Sequences: 219361
Number of extensions: 925144
Number of successful extensions: 2816
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2814
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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