ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet38b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478377.1| Oryza sativa (japonica cultivar-group), mRNA 256 5e-65
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 256 5e-65
3dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic D... 256 5e-65
4dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic D... 256 5e-65
5dbj|AK105071.1| Oryza sativa (japonica cultivar-group) cDNA clon... 256 5e-65
6dbj|AK072104.1| Oryza sativa (japonica cultivar-group) cDNA clon... 256 5e-65
7dbj|AK064835.1| Oryza sativa (japonica cultivar-group) cDNA clon... 256 5e-65
8gb|AY108268.1| Zea mays PCO078526 mRNA sequence 224 2e-55
9gb|AC129330.4| Mus musculus BAC clone RP23-61B8 from chromosome ... 48 0.021
10gb|AC125536.3| Mus musculus BAC clone RP24-142N21 from chromosom... 48 0.021
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
12gb|AC114785.5| Homo sapiens BAC clone RP11-607G14 from 2, comple... 44 0.33
13dbj|AP004151.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
14gb|U88181.1| Caenorhabditis elegans cosmid C55B6, complete sequence 42 1.3
15gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
16emb|AL360078.16| Human DNA sequence from clone RP11-530N10 on ch... 42 1.3
17gb|AY267622.1| Bigelowiella natans ATP synthase gamma subunit mR... 42 1.3
18gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, com... 42 1.3
19gb|AC118139.3| Homo sapiens BAC clone RP11-461K12 from 4, comple... 42 1.3
20gb|AC107365.2| Danio rerio, clone -241I7, complete sequence 42 1.3
21gb|AC012336.9|AC012336 Homo sapiens chromosome 17, clone CTD-223... 42 1.3
22dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
23gb|AF088219.1|AF088219 Homo sapiens CC chemokine gene cluster, c... 42 1.3
24emb|CR382300.12| Zebrafish DNA sequence from clone DKEY-25E11 in... 42 1.3
25gb|AC006572.2|AC006572 Homo sapiens, clone hRPK.60_A_1, complete... 42 1.3
26gb|AC004675.1|AC004675 Homo sapiens chromosome 17, clone hCIT.18... 42 1.3
27gb|AC134588.5| Mus musculus BAC clone RP23-314N18 from 14, compl... 42 1.3
28gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 5.2
29gb|AC164575.7| Mus musculus 10 BAC RP23-455M6 (Roswell Park Canc... 40 5.2
30gb|AC122903.4| Mus musculus BAC clone RP23-44N5 from chromosome ... 40 5.2
31gb|AC146272.3| Pan troglodytes BAC clone RP43-29H6 from 7, compl... 40 5.2
32gb|AY363103.1|AY363102S2 Mus musculus diadenosine triphosphate h... 40 5.2
33emb|Z81119.1|CET10H4 Caenorhabditis elegans Cosmid T10H4, comple... 40 5.2
34gb|AC129299.3| Mus musculus BAC clone RP24-420E16 from chromosom... 40 5.2
35gb|AC142352.1| Pan troglodytes BAC clone RP43-21K18 from 7, comp... 40 5.2
36emb|AL691420.13| Human DNA sequence from clone RP11-352C6 on chr... 40 5.2
37emb|AL365214.16| Human DNA sequence from clone RP11-506B6 on chr... 40 5.2
38gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 5.2
39gb|AC154570.2| Mus musculus BAC clone RP23-385M5 from chromosome... 40 5.2
40gb|AC006454.4| Homo sapiens PAC clone RP5-852P6 from 7, complete... 40 5.2
41emb|AL929280.6| Mouse DNA sequence from clone RP23-67M20 on chro... 40 5.2
42emb|AL663060.6| Mouse DNA sequence from clone RP23-239H6 on chro... 40 5.2
43gb|AE014178.1| Mus musculus piebald deletion region section 6 of... 40 5.2
44gb|AC012031.17| Homo sapiens 3 BAC RP11-91K9 (Roswell Park Cance... 40 5.2
45gb|AC092745.7| Homo sapiens 12 BAC RP11-90D4 (Roswell Park Cance... 40 5.2
46gb|AC092111.9| Homo sapiens 12 BAC RP11-266K4 (Roswell Park Canc... 40 5.2
47dbj|AB232920.1| Oryzias latipes hox gene cluster, complete cds, ... 40 5.2
48gb|AC087069.3| Homo sapiens chromosome 7 clone RP11-7P19, comple... 40 5.2
49gb|AC175781.3| Cavia porcellus clone CH234-402D11, complete sequ... 40 5.2
50gb|AC155810.5| Mus musculus BAC clone RP24-181I18 from chromosom... 40 5.2
51dbj|AK051229.1| Mus musculus 12 days embryo spinal ganglion cDNA... 40 5.2
52dbj|AK037782.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 40 5.2
53dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
54gb|AC012355.10| Homo sapiens BAC clone RP11-239I4 from 2, comple... 40 5.2
55gb|AC087888.12| Homo sapiens 12 BAC RP11-228G3 (Roswell Park Can... 40 5.2
56gb|AC105916.4| Homo sapiens BAC clone RP11-180A12 from 4, comple... 40 5.2
57emb|AL929073.19| Mouse DNA sequence from clone RP23-125D6 on chr... 40 5.2
58dbj|AP003714.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
59dbj|AP004328.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
60dbj|AP005611.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
61dbj|AK121910.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
62dbj|AK101846.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
63dbj|AP006255.1| Homo sapiens genomic DNA, chromosome 9, clone:RP... 40 5.2
64dbj|AP006210.1| Homo sapiens genomic DNA, chromosome 9, clone:RP... 40 5.2
65gb|AC134428.3| Mus musculus BAC clone RP24-330C24 from 10, compl... 40 5.2
66dbj|AB020872.1| Homo sapiens genomic DNA of 9q32 anti-oncogene o... 40 5.2
67dbj|AB015309.1| Acidovorax sp. TP4 gene for PHB depolymerase, co... 40 5.2 
>ref|XM_478377.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1469

 Score =  256 bits (129), Expect = 5e-65
 Identities = 183/201 (91%)
 Strand = Plus / Minus

                                                                        
Query: 190  agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 249
            |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 1119 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 1060

                                                                        
Query: 250  cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 309
            || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 1059 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 1000

                                                                        
Query: 310  atggcgctcatcctggctgcgagctcgctagcgagcgactcctggagggcacgcaggatc 369
            ||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||
Sbjct: 999  atggcgctcatcctggcggcgagctcgctggcgagcgactcctggagcgcgcggaggatc 940

                                 
Query: 370  tggctgttgaggtaaagcggg 390
            |||||||||||||| ||||||
Sbjct: 939  tggctgttgaggtagagcggg 919
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  256 bits (129), Expect = 5e-65
 Identities = 183/201 (91%)
 Strand = Plus / Plus

                                                                            
Query: 190      agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 249
                |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 19602762 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 19602821

                                                                            
Query: 250      cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 309
                || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 19602822 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 19602881

                                                                            
Query: 310      atggcgctcatcctggctgcgagctcgctagcgagcgactcctggagggcacgcaggatc 369
                ||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||
Sbjct: 19602882 atggcgctcatcctggcggcgagctcgctggcgagcgactcctggagcgcgcggaggatc 19602941

                                     
Query: 370      tggctgttgaggtaaagcggg 390
                |||||||||||||| ||||||
Sbjct: 19602942 tggctgttgaggtagagcggg 19602962
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>dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0580A11
          Length = 174673

 Score =  256 bits (129), Expect = 5e-65
 Identities = 183/201 (91%)
 Strand = Plus / Plus

                                                                          
Query: 190    agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 249
              |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 146106 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 146165

                                                                          
Query: 250    cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 309
              || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 146166 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 146225

                                                                          
Query: 310    atggcgctcatcctggctgcgagctcgctagcgagcgactcctggagggcacgcaggatc 369
              ||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||
Sbjct: 146226 atggcgctcatcctggcggcgagctcgctggcgagcgactcctggagcgcgcggaggatc 146285

                                   
Query: 370    tggctgttgaggtaaagcggg 390
              |||||||||||||| ||||||
Sbjct: 146286 tggctgttgaggtagagcggg 146306
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>dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0041J06
          Length = 138157

 Score =  256 bits (129), Expect = 5e-65
 Identities = 183/201 (91%)
 Strand = Plus / Plus

                                                                         
Query: 190   agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 249
             |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 41412 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 41471

                                                                         
Query: 250   cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 309
             || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 41472 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 41531

                                                                         
Query: 310   atggcgctcatcctggctgcgagctcgctagcgagcgactcctggagggcacgcaggatc 369
             ||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||
Sbjct: 41532 atggcgctcatcctggcggcgagctcgctggcgagcgactcctggagcgcgcggaggatc 41591

                                  
Query: 370   tggctgttgaggtaaagcggg 390
             |||||||||||||| ||||||
Sbjct: 41592 tggctgttgaggtagagcggg 41612
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>dbj|AK105071.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-C11, full
            insert sequence
          Length = 2822

 Score =  256 bits (129), Expect = 5e-65
 Identities = 183/201 (91%)
 Strand = Plus / Minus

                                                                        
Query: 190  agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 249
            |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 2584 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 2525

                                                                        
Query: 250  cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 309
            || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 2524 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 2465

                                                                        
Query: 310  atggcgctcatcctggctgcgagctcgctagcgagcgactcctggagggcacgcaggatc 369
            ||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||
Sbjct: 2464 atggcgctcatcctggcggcgagctcgctggcgagcgactcctggagcgcgcggaggatc 2405

                                 
Query: 370  tggctgttgaggtaaagcggg 390
            |||||||||||||| ||||||
Sbjct: 2404 tggctgttgaggtagagcggg 2384
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>dbj|AK072104.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116B21, full
            insert sequence
          Length = 1470

 Score =  256 bits (129), Expect = 5e-65
 Identities = 183/201 (91%)
 Strand = Plus / Minus

                                                                        
Query: 190  agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 249
            |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 1119 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 1060

                                                                        
Query: 250  cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 309
            || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 1059 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 1000

                                                                        
Query: 310  atggcgctcatcctggctgcgagctcgctagcgagcgactcctggagggcacgcaggatc 369
            ||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||
Sbjct: 999  atggcgctcatcctggcggcgagctcgctggcgagcgactcctggagcgcgcggaggatc 940

                                 
Query: 370  tggctgttgaggtaaagcggg 390
            |||||||||||||| ||||||
Sbjct: 939  tggctgttgaggtagagcggg 919
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>dbj|AK064835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F20, full
            insert sequence
          Length = 1482

 Score =  256 bits (129), Expect = 5e-65
 Identities = 183/201 (91%)
 Strand = Plus / Minus

                                                                        
Query: 190  agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 249
            |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 1224 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 1165

                                                                        
Query: 250  cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 309
            || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 1164 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 1105

                                                                        
Query: 310  atggcgctcatcctggctgcgagctcgctagcgagcgactcctggagggcacgcaggatc 369
            ||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||
Sbjct: 1104 atggcgctcatcctggcggcgagctcgctggcgagcgactcctggagcgcgcggaggatc 1045

                                 
Query: 370  tggctgttgaggtaaagcggg 390
            |||||||||||||| ||||||
Sbjct: 1044 tggctgttgaggtagagcggg 1024
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>gb|AY108268.1| Zea mays PCO078526 mRNA sequence
          Length = 1437

 Score =  224 bits (113), Expect = 2e-55
 Identities = 179/201 (89%)
 Strand = Plus / Minus

                                                                        
Query: 190  agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 249
            ||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||  | 
Sbjct: 1168 agggcgtcggcaccggcgacgatctcgaggatctccccggtgatcttggcctggcgctgt 1109

                                                                        
Query: 250  cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 309
            || |||||| | |||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 1108 cggttgtaggcgatggagaggttcttgcggagctcgatggcgttgtcggtggcgctgctc 1049

                                                                        
Query: 310  atggcgctcatcctggctgcgagctcgctagcgagcgactcctggagggcacgcaggatc 369
            ||||||||||||| ||| ||||||||||| |||||||||||||| |||||||| ||||||
Sbjct: 1048 atggcgctcatccgggcggcgagctcgctggcgagcgactcctgcagggcacggaggatc 989

                                 
Query: 370  tggctgttgaggtaaagcggg 390
            |||||||||||||| ||||||
Sbjct: 988  tggctgttgaggtagagcggg 968
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>gb|AC129330.4| Mus musculus BAC clone RP23-61B8 from chromosome 8, complete sequence
          Length = 218698

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 116   agaagagaggagaaaaggaggcagagag 143
             ||||||||||||||||||||| ||||||
Sbjct: 15174 agaagagaggagaaaaggagggagagag 15201
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>gb|AC125536.3| Mus musculus BAC clone RP24-142N21 from chromosome 8, complete
            sequence
          Length = 199356

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 116  agaagagaggagaaaaggaggcagagag 143
            ||||||||||||||||||||| ||||||
Sbjct: 3705 agaagagaggagaaaaggagggagagag 3678
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 122      gaggagaaaaggaggcagagag 143
                ||||||||||||||||||||||
Sbjct: 14234710 gaggagaaaaggaggcagagag 14234731



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 114      ctagaagagaggagaaaagg 133
                ||||||||||||||||||||
Sbjct: 20600956 ctagaagagaggagaaaagg 20600937
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>gb|AC114785.5| Homo sapiens BAC clone RP11-607G14 from 2, complete sequence
          Length = 118022

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 80   tacaaacacagacacagaccaa 101
            ||||||||||||||||||||||
Sbjct: 7121 tacaaacacagacacagaccaa 7142
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>dbj|AP004151.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_E02
          Length = 125860

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 122   gaggagaaaaggaggcagagag 143
             ||||||||||||||||||||||
Sbjct: 39860 gaggagaaaaggaggcagagag 39881
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>gb|U88181.1| Caenorhabditis elegans cosmid C55B6, complete sequence
          Length = 25003

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 69    tgagaaattattacaaacaca 89
             |||||||||||||||||||||
Sbjct: 19896 tgagaaattattacaaacaca 19876
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>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088M05,
              complete sequence
          Length = 153368

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 116    agaagagaggagaaaaggagg 136
              |||||||||||||||||||||
Sbjct: 140157 agaagagaggagaaaaggagg 140177
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>emb|AL360078.16| Human DNA sequence from clone RP11-530N10 on chromosome 20 Contains the
              DEFB126 gene for defensin beta 126, the DEFB127 gene for
              defensin beta 127, the DEFB129 gene for defensin beta 129,
              the DEFB125 gene for defensin beta 125 and the DEFB128 gene
              for defensin beta 128, complete sequence
          Length = 164123

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 119    agagaggagaaaaggaggcagagag 143
              |||||||||||||||||| ||||||
Sbjct: 140129 agagaggagaaaaggagggagagag 140153



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 119    agagaggagaaaaggaggcagagag 143
              |||||||||||||||||| ||||||
Sbjct: 140110 agagaggagaaaaggagggagagag 140134
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>gb|AY267622.1| Bigelowiella natans ATP synthase gamma subunit mRNA, complete cds;
            nuclear gene for plastid product
          Length = 1351

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 193  gcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcg 245
            ||||| || ||||||||||||||||| || ||   ||||||||| ||||||||
Sbjct: 1174 gcgtctgcaccagcgacgatctcaagaatttcattggtgatcttagcctggcg 1122
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>gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, complete sequence
          Length = 181022

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 117   gaagagaggagaaaaggaggcagag 141
             |||||||||||||||||||| ||||
Sbjct: 27254 gaagagaggagaaaaggaggaagag 27230
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>gb|AC118139.3| Homo sapiens BAC clone RP11-461K12 from 4, complete sequence
          Length = 54171

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 116 agaagagaggagaaaaggagg 136
           |||||||||||||||||||||
Sbjct: 459 agaagagaggagaaaaggagg 479
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>gb|AC107365.2| Danio rerio, clone -241I7, complete sequence
          Length = 128411

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 116    agaagagaggagaaaaggagg 136
              |||||||||||||||||||||
Sbjct: 127553 agaagagaggagaaaaggagg 127533
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>gb|AC012336.9|AC012336 Homo sapiens chromosome 17, clone CTD-2236G12, complete sequence
          Length = 40405

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 117   gaagagaggagaaaaggaggcagag 141
             |||||||||||||||||||| ||||
Sbjct: 10132 gaagagaggagaaaaggaggaagag 10156
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 116      agaagagaggagaaaaggagg 136
                |||||||||||||||||||||
Sbjct: 18346945 agaagagaggagaaaaggagg 18346965
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>gb|AF088219.1|AF088219 Homo sapiens CC chemokine gene cluster, complete sequence
          Length = 180919

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 106   gataagtactagaagagagga 126
             |||||||||||||||||||||
Sbjct: 90350 gataagtactagaagagagga 90330
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>emb|CR382300.12| Zebrafish DNA sequence from clone DKEY-25E11 in linkage group 19,
             complete sequence
          Length = 202006

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 116   agaagagaggagaaaaggagg 136
             |||||||||||||||||||||
Sbjct: 35716 agaagagaggagaaaaggagg 35736
to top
>gb|AC006572.2|AC006572 Homo sapiens, clone hRPK.60_A_1, complete sequence
          Length = 179691

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 116    agaagagaggagaaaaggagg 136
              |||||||||||||||||||||
Sbjct: 178150 agaagagaggagaaaaggagg 178170
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>gb|AC004675.1|AC004675 Homo sapiens chromosome 17, clone hCIT.186_H_2, complete sequence
          Length = 128501

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 106   gataagtactagaagagagga 126
             |||||||||||||||||||||
Sbjct: 88143 gataagtactagaagagagga 88163
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>gb|AC134588.5| Mus musculus BAC clone RP23-314N18 from 14, complete sequence
          Length = 178957

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 117   gaagagaggagaaaaggaggcagag 141
             ||||||||||||||| |||||||||
Sbjct: 86526 gaagagaggagaaaatgaggcagag 86550
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 302     cgctgctcatggcgctcatc 321
               ||||||||||||||||||||
Sbjct: 2764884 cgctgctcatggcgctcatc 2764903
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>gb|AC164575.7| Mus musculus 10 BAC RP23-455M6 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 196723

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    gaggagaaaaggaggcagag 141
              ||||||||||||||||||||
Sbjct: 109377 gaggagaaaaggaggcagag 109358
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>gb|AC122903.4| Mus musculus BAC clone RP23-44N5 from chromosome 1, complete sequence
          Length = 169832

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     ttacaaacacagacacagac 98
              ||||||||||||||||||||
Sbjct: 134653 ttacaaacacagacacagac 134672
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>gb|AC146272.3| Pan troglodytes BAC clone RP43-29H6 from 7, complete sequence
          Length = 149408

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 119   agagaggagaaaaggaggcagaga 142
             |||||||||||||||||| |||||
Sbjct: 81359 agagaggagaaaaggaggaagaga 81336
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>gb|AY363103.1|AY363102S2 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, exons 6
              through 10 and partial cds
          Length = 688489

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     tacaaacacagacacagacc 99
              ||||||||||||||||||||
Sbjct: 401220 tacaaacacagacacagacc 401239
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>emb|Z81119.1|CET10H4 Caenorhabditis elegans Cosmid T10H4, complete sequence
          Length = 33319

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    agaaattattacaaacacag 90
             ||||||||||||||||||||
Sbjct: 12793 agaaattattacaaacacag 12812
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>gb|AC129299.3| Mus musculus BAC clone RP24-420E16 from chromosome 14, complete sequence
          Length = 156372

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 120    gagaggagaaaaggaggcagagag 143
              |||| |||||||||||||||||||
Sbjct: 148699 gagaagagaaaaggaggcagagag 148722
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>gb|AC142352.1| Pan troglodytes BAC clone RP43-21K18 from 7, complete sequence
          Length = 171165

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 119    agagaggagaaaaggaggcagaga 142
              |||||||||||||||||| |||||
Sbjct: 103775 agagaggagaaaaggaggaagaga 103752
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>emb|AL691420.13| Human DNA sequence from clone RP11-352C6 on chromosome 9, complete
              sequence
          Length = 175726

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 120    gagaggagaaaaggaggcagagag 143
              ||||||||||||||||| ||||||
Sbjct: 136967 gagaggagaaaaggagggagagag 136990
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>emb|AL365214.16| Human DNA sequence from clone RP11-506B6 on chromosome 6 Contains a fem-1
              homolog a (C. elegans) (FEM1A) pseudogene, a keratin 18
              (KRT18) pseudogene, a laminin receptor 1 (67kD, ribosomal
              protein SA) (LAMR1)(RPSA) pseudogene, a hepatocellular
              carcinoma-related putative tumor suppressor (LPTS)
              pseudogene and the 3' end of a novel gene, complete
              sequence
          Length = 210107

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 112    tactagaagagaggagaaaa 131
              ||||||||||||||||||||
Sbjct: 191747 tactagaagagaggagaaaa 191728
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 189     cagggcgtcggcgccagcga 208
               ||||||||||||||||||||
Sbjct: 1196169 cagggcgtcggcgccagcga 1196188
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>gb|AC154570.2| Mus musculus BAC clone RP23-385M5 from chromosome 14, complete sequence
          Length = 209218

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     tacaaacacagacacagacc 99
              ||||||||||||||||||||
Sbjct: 108436 tacaaacacagacacagacc 108417
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>gb|AC006454.4| Homo sapiens PAC clone RP5-852P6 from 7, complete sequence
          Length = 153203

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   gcagctcagcccagggagga 178
             ||||||||||||||||||||
Sbjct: 13876 gcagctcagcccagggagga 13857
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>emb|AL929280.6| Mouse DNA sequence from clone RP23-67M20 on chromosome 11 Contains a
              novel gene (2810471M01Rik), the 5' end of the gene for a
              novel protein (E030025D05Rik) and a CpG island, complete
              sequence
          Length = 216627

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     acacagacacagaccaagca 104
              ||||||||||||||||||||
Sbjct: 113992 acacagacacagaccaagca 113973
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>emb|AL663060.6| Mouse DNA sequence from clone RP23-239H6 on chromosome 11, complete
             sequence
          Length = 218635

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    acacagaccaagcaagataa 110
             ||||||||||||||||||||
Sbjct: 54294 acacagaccaagcaagataa 54275
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>gb|AE014178.1| Mus musculus piebald deletion region section 6 of 11 of the complete
              sequence
          Length = 400029

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 120    gagaggagaaaaggaggcagagag 143
              |||| |||||||||||||||||||
Sbjct: 153778 gagaagagaaaaggaggcagagag 153801
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>gb|AC012031.17| Homo sapiens 3 BAC RP11-91K9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 157639

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   aggagaaaaggaggcagaga 142
             ||||||||||||||||||||
Sbjct: 24002 aggagaaaaggaggcagaga 23983
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>gb|AC092745.7| Homo sapiens 12 BAC RP11-90D4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 152599

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 307   ctcatggcgctcatcctggc 326
             ||||||||||||||||||||
Sbjct: 39643 ctcatggcgctcatcctggc 39624
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>gb|AC092111.9| Homo sapiens 12 BAC RP11-266K4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 138313

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 307    ctcatggcgctcatcctggc 326
              ||||||||||||||||||||
Sbjct: 114733 ctcatggcgctcatcctggc 114714
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>dbj|AB232920.1| Oryzias latipes hox gene cluster, complete cds, contains hoxBa, evx
             homologue on hoxBa
          Length = 235883

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   agaagagaggagaaaaggag 135
             ||||||||||||||||||||
Sbjct: 76918 agaagagaggagaaaaggag 76937
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>gb|AC087069.3| Homo sapiens chromosome 7 clone RP11-7P19, complete sequence
          Length = 159620

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 119   agagaggagaaaaggaggcagaga 142
             |||||||||||||||||| |||||
Sbjct: 82023 agagaggagaaaaggaggaagaga 82000
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>gb|AC175781.3| Cavia porcellus clone CH234-402D11, complete sequence
          Length = 183894

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   gaagagaggagaaaaggagg 136
             ||||||||||||||||||||
Sbjct: 48112 gaagagaggagaaaaggagg 48131
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>gb|AC155810.5| Mus musculus BAC clone RP24-181I18 from chromosome 8, complete sequence
          Length = 168291

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 120    gagaggagaaaaggaggcagagag 143
              |||||||||||||||| |||||||
Sbjct: 107571 gagaggagaaaaggagccagagag 107594
to top
>dbj|AK051229.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
           enriched library, clone:D130019J16
           product:unclassifiable, full insert sequence
          Length = 2020

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 79  ttacaaacacagacacagac 98
           ||||||||||||||||||||
Sbjct: 511 ttacaaacacagacacagac 492
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>dbj|AK037782.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
           enriched library, clone:A130049I01
           product:unclassifiable, full insert sequence
          Length = 1553

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 79  ttacaaacacagacacagac 98
           ||||||||||||||||||||
Sbjct: 649 ttacaaacacagacacagac 630
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 80       tacaaacacagacacagacc 99
                ||||||||||||||||||||
Sbjct: 21304663 tacaaacacagacacagacc 21304682



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 51       acatccttttttgtgctatg 70
                ||||||||||||||||||||
Sbjct: 19087865 acatccttttttgtgctatg 19087846
to top
>gb|AC012355.10| Homo sapiens BAC clone RP11-239I4 from 2, complete sequence
          Length = 120112

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 119   agagaggagaaaaggaggcagaga 142
             |||||||||| |||||||||||||
Sbjct: 43316 agagaggagagaaggaggcagaga 43293
to top
>gb|AC087888.12| Homo sapiens 12 BAC RP11-228G3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 87788

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 130   aaggaggcagagagttatatataa 153
             ||||||||| ||||||||||||||
Sbjct: 75558 aaggaggcaaagagttatatataa 75535
to top
>gb|AC105916.4| Homo sapiens BAC clone RP11-180A12 from 4, complete sequence
          Length = 104269

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   ggcagctcagcccagggagg 177
             ||||||||||||||||||||
Sbjct: 81855 ggcagctcagcccagggagg 81874
to top
>emb|AL929073.19| Mouse DNA sequence from clone RP23-125D6 on chromosome 4, complete
             sequence
          Length = 129246

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   gaagagaggagaaaaggagg 136
             ||||||||||||||||||||
Sbjct: 16741 gaagagaggagaaaaggagg 16760
to top
>dbj|AP003714.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0656E03
          Length = 181786

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     tacaaacacagacacagacc 99
              ||||||||||||||||||||
Sbjct: 100039 tacaaacacagacacagacc 100058
to top
>dbj|AP004328.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1616_B03
          Length = 96081

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    acatccttttttgtgctatg 70
             ||||||||||||||||||||
Sbjct: 85349 acatccttttttgtgctatg 85330
to top
>dbj|AP005611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0051E21
          Length = 137959

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   ctagaagagaggagaaaagg 133
             ||||||||||||||||||||
Sbjct: 96514 ctagaagagaggagaaaagg 96495
to top
>dbj|AK121910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105O17, full
           insert sequence
          Length = 1563

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 51  acatccttttttgtgctatg 70
           ||||||||||||||||||||
Sbjct: 859 acatccttttttgtgctatg 840
to top
>dbj|AK101846.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069I17, full
           insert sequence
          Length = 3061

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 51  acatccttttttgtgctatg 70
           ||||||||||||||||||||
Sbjct: 865 acatccttttttgtgctatg 846
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>dbj|AP006255.1| Homo sapiens genomic DNA, chromosome 9, clone:RP11-361G14, complete
              sequence
          Length = 189176

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 120    gagaggagaaaaggaggcagagag 143
              ||||||||||||||||| ||||||
Sbjct: 165597 gagaggagaaaaggagggagagag 165620
to top
>dbj|AP006210.1| Homo sapiens genomic DNA, chromosome 9, clone:RP11-449F3, complete
             sequence
          Length = 165755

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 120   gagaggagaaaaggaggcagagag 143
             ||||||||||||||||| ||||||
Sbjct: 39023 gagaggagaaaaggagggagagag 39046
to top
>gb|AC134428.3| Mus musculus BAC clone RP24-330C24 from 10, complete sequence
          Length = 148006

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    gaggagaaaaggaggcagag 141
              ||||||||||||||||||||
Sbjct: 136471 gaggagaaaaggaggcagag 136452
to top
>dbj|AB020872.1| Homo sapiens genomic DNA of 9q32 anti-oncogene of flat epitherium
             cancer , segment 4/10
          Length = 100000

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 120   gagaggagaaaaggaggcagagag 143
             ||||||||||||||||| ||||||
Sbjct: 86760 gagaggagaaaaggagggagagag 86783
to top
>dbj|AB015309.1| Acidovorax sp. TP4 gene for PHB depolymerase, complete cds
          Length = 3846

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 298  gtggcgctgctcatggcgct 317
            ||||||||||||||||||||
Sbjct: 2294 gtggcgctgctcatggcgct 2313


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,917,337
Number of Sequences: 3902068
Number of extensions: 3917337
Number of successful extensions: 105136
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 104791
Number of HSP's gapped (non-prelim): 346
length of query: 390
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 368
effective length of database: 17,147,199,772
effective search space: 6310169516096
effective search space used: 6310169516096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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