ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet37g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SETD8_DROME (Q9VFK6) Histone-lysine N-methyltransferase, H4 lysi... 29 3.1
2VE2_HPV39 (P24830) Regulatory protein E2 28 6.8
3BUR1_YARLI (Q6C842) Serine/threonine-protein kinase BUR1 (EC 2.7... 27 8.9

>SETD8_DROME (Q9VFK6) Histone-lysine N-methyltransferase, H4 lysine-20 specific|
           (EC 2.1.1.43) (Histone H4-K20 methyltransferase)
           (H4-K20-HMTase) (dSET8)
          Length = 691

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 235 NNLFISSTSVLLV*EKGRPKR--VLISSSLGIAKGLFCSTPSVLNNCLN 375
           +N+F+    + L  ++   K   + I+ S  +A  +F S PSVLN CLN
Sbjct: 253 DNIFLQEPVLTLDIDRTPTKASSIKINRSFELAGAVFSSPPSVLNACLN 301



to top

>VE2_HPV39 (P24830) Regulatory protein E2|
          Length = 370

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
 Frame = +1

Query: 49  PTNISQSYEGIRRFYNATTEVTR----HSRHTTPCTSKVL---SHKSP--CGVSTMQGYT 201
           P ++  + +G       TTE++     HS  TTPCT K +   S K P  C V+     T
Sbjct: 202 PDSMCSTSDGSVPTTELTTELSNTTATHSTATTPCTQKTIPPPSRKRPRQCAVTEP---T 258

Query: 202 NND*NAQLHKNNNLFISST 258
             D  +  H NN L  +ST
Sbjct: 259 EPDGVSLDHLNNPLHSNST 277



to top

>BUR1_YARLI (Q6C842) Serine/threonine-protein kinase BUR1 (EC 2.7.11.22) (EC|
           2.7.11.23)
          Length = 706

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -2

Query: 368 QLFRTEGVLQKRPLAIPRLLLISTRLGLPFSHTSRTLVLEI 246
           ++FR E +  KR +A+ ++LL S + G P +      +L++
Sbjct: 51  EVFRAEQITTKRHVALKKILLHSEKEGFPVTALREIRILKL 91


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,148,697
Number of Sequences: 219361
Number of extensions: 990334
Number of successful extensions: 2168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2167
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top