ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet37g02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY589584.1| Triticum aestivum alpha-expansin EXPA2 mRNA, comp... 262 8e-67
2gb|AY543529.1| Triticum aestivum expansin EXPA3 mRNA, complete cds 220 3e-54
3emb|AJ276007.1|FPR276007 Festuca pratensis partial mRNA for expa... 109 7e-21
4gb|AY133251.1|AY133250S2 Hordeum vulgare subsp. vulgare starch s... 68 2e-08
5gb|DQ201146.1| Hordeum vulgare subsp. vulgare cultivar Kompolti ... 64 4e-07
6gb|DQ238106.1| Hordeum vulgare subsp. vulgare cv. Morex phytochr... 64 4e-07
7gb|DQ201145.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo p... 64 4e-07
8gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence 60 6e-06
9emb|AJ249141.1|HVU249141 Hordeum vulgare mRNA for MADS-box prote... 60 6e-06
10emb|AJ234485.1|HVU234485 Hordeum vulgare genomic DNA fragment; c... 60 6e-06
11gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones B... 54 4e-04
12gb|AF509744.1| Hordeum vulgare subsp. vulgare Morex receptor-lik... 54 4e-04
13gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, comple... 52 0.001
14gb|AF488415.1| Triticum monococcum chromosome 7Am BAC 5K14 compl... 52 0.001
15emb|X83518.1|HVKNOX3 H.vulgare Knox3 gene 52 0.001
16gb|AF509746.1| Hordeum vulgare subsp. spontaneum OSU6 receptor-l... 52 0.001
17gb|AF509745.1| Hordeum vulgare subsp. vulgare Steptoe receptor-l... 52 0.001
18gb|AF332169.1| Zea mays alpha-expansin (expA1) mRNA, complete cds 48 0.022
19emb|AJ400714.1|TAE400714 Triticum aestivum vp1D gene for VIVIPAR... 48 0.022
20gb|AY104146.1| Zea mays PCO064861 mRNA sequence 48 0.022
21dbj|AP001822.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 46 0.087
22emb|Z81506.1|CEF16H6 Caenorhabditis elegans Cosmid F16H6, comple... 44 0.34
23gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, ... 44 0.34
24gb|AC007768.5| Homo sapiens chromosome 18, clone RP11-540M4, com... 42 1.4
25gb|DQ233256.1| Homo sapiens complement factor H (CFH) gene, comp... 40 5.4
26gb|BT013780.1| Lycopersicon esculentum clone 132670R, mRNA sequence 40 5.4
27gb|AF394544.1| Oryza sativa alpha-expansin OsEXPA2 (EXPA2) gene,... 40 5.4
28gb|U30477.1|OSU30477 Oryza sativa (japonica cultivar-group) expa... 40 5.4
29gb|AC101758.6| Mus musculus chromosome 1, clone RP24-75F14, comp... 40 5.4
30emb|AL049744.8|HSJ177P10 Human DNA sequence from clone RP1-177P1... 40 5.4
31emb|Z97339.2|ATFCA4 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 5.4
32emb|AL161542.2|ATCHRIV42 Arabidopsis thaliana DNA chromosome 4, ... 40 5.4
33emb|AL590153.9| Zebrafish DNA sequence from clone RP71-71M17 in ... 40 5.4
34gb|AC161493.6| Mus musculus chromosome 1, clone RP24-77I21, comp... 40 5.4
35dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
36dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
37dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
38dbj|AP003348.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
39dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
40dbj|AK070463.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.4
41emb|AL672036.6| Mouse DNA sequence from clone RP23-395P1 on chro... 40 5.4 
>gb|AY589584.1| Triticum aestivum alpha-expansin EXPA2 mRNA, complete cds
          Length = 1142

 Score =  262 bits (132), Expect = 8e-67
 Identities = 222/249 (89%), Gaps = 11/249 (4%)
 Strand = Plus / Minus

                                                                        
Query: 97   gcaacaacagaagttacaagacactctcgacacaccactccatg------tacttctaaa 150
            |||||||||||||||||||||||||||| |||||||||||||||      ||| ||||||
Sbjct: 1129 gcaacaacagaagttacaagacactctc-acacaccactccatgcatgtgtacctctaaa 1071

                                                                        
Query: 151  gtactctcacataaatcaccttgtggtgtttccacaatgcaaggctacactaacaatgat 210
            | || || | ||||||||||||| | ||||| ||||| ||||||| ||||||||||||||
Sbjct: 1070 gcacccttaaataaatcaccttgcgatgttttcacaacgcaaggccacactaacaatgat 1011

                                                                        
Query: 211  taaaatgctcaactccacaagaa-taataacttatttatctctagtacaagtgtcctact 269
             ||||||||||||||||||| || ||||||||||||||| |||| |||   ||| |||||
Sbjct: 1010 caaaatgctcaactccacaataagtaataacttatttatgtctactac---tgtgctact 954

                                                                        
Query: 270  agtatgagagaagggaaggcctaagcgggtgctgatcagcagcagcctcggaatagccaa 329
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 953  agtatgagagaagggaaggcctaagcgggtgctgatcagcagcagcctcggaatagccga 894

                     
Query: 330  aggcctctt 338
            |||||||||
Sbjct: 893  aggcctctt 885
to top
>gb|AY543529.1| Triticum aestivum expansin EXPA3 mRNA, complete cds
          Length = 1106

 Score =  220 bits (111), Expect = 3e-54
 Identities = 180/201 (89%), Gaps = 4/201 (1%)
 Strand = Plus / Minus

                                                                        
Query: 139  tgtacttctaaagtactctcacataaatcaccttgtggtgtttccacaatgcaaggctac 198
            ||||| ||||||| || || | ||||||||||||| | ||||| ||||| ||||||| ||
Sbjct: 1085 tgtacctctaaagcacccttaaataaatcaccttgcgatgttttcacaacgcaaggccac 1026

                                                                        
Query: 199  actaacaatgattaaaatgctcaactccacaagaa-taataacttatttatctctagtac 257
            |||||||||||| ||||||| ||||||||||| || ||||||||||||||| |||| |||
Sbjct: 1025 actaacaatgatcaaaatgcacaactccacaataagtaataacttatttatgtctactac 966

                                                                        
Query: 258  aagtgtcctactagtatgagagaagggaaggcctaagcgggtgctgatcagcagcagcct 317
               ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965  ---tgtgctactagtatgagagaagggaaggcctaagcgggtgctgatcagcagcagcct 909

                                 
Query: 318  cggaatagccaaaggcctctt 338
            |||||||||| ||||||||||
Sbjct: 908  cggaatagccgaaggcctctt 888
to top
>emb|AJ276007.1|FPR276007 Festuca pratensis partial mRNA for expansin (exp2 gene)
          Length = 1248

 Score =  109 bits (55), Expect = 7e-21
 Identities = 67/71 (94%)
 Strand = Plus / Minus

                                                                        
Query: 268  ctagtatgagagaagggaaggcctaagcgggtgctgatcagcagcagcctcggaatagcc 327
            ||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 1004 ctagtgtgagagaagggaaggcccaagcgggtgctgatcagcagcaacctcggaatagcc 945

                       
Query: 328  aaaggcctctt 338
             ||||||||||
Sbjct: 944  gaaggcctctt 934



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 49/55 (89%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                   
Query: 90   ttacaacgcaacaacagaagttacaagacactctcgacacaccactccatgtact 144
            |||||||| ||||||| ||||||||||| |||| | ||||||||| |||||||||
Sbjct: 1173 ttacaacgtaacaacaaaagttacaagaaactcac-acacaccaccccatgtact 1120
to top
>gb|AY133251.1|AY133250S2 Hordeum vulgare subsp. vulgare starch synthase II gene, exon 9 and
           complete cds
          Length = 3856

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                 
Query: 360 aaataactgtctcaattttgtactagctctagtacaaa 397
           ||||||||||||||| ||||||||||||||||||||||
Sbjct: 985 aaataactgtctcaactttgtactagctctagtacaaa 948
to top
>gb|DQ201146.1| Hordeum vulgare subsp. vulgare cultivar Kompolti korai phytochrome C
            (PhyC) gene, complete cds
          Length = 4914

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                    
Query: 358  ctaaataactgtctcaattttgtactagctctagtacaaa 397
            |||||||| |||||||||||||||||||||||| ||||||
Sbjct: 3962 ctaaataagtgtctcaattttgtactagctctattacaaa 4001
to top
>gb|DQ238106.1| Hordeum vulgare subsp. vulgare cv. Morex phytochrome C (PhyC) gene,
            complete cds
          Length = 4938

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                    
Query: 358  ctaaataactgtctcaattttgtactagctctagtacaaa 397
            |||||||| |||||||||||||||||||||||| ||||||
Sbjct: 3962 ctaaataagtgtctcaattttgtactagctctattacaaa 4001
to top
>gb|DQ201145.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo phytochrome C (PhyC)
            gene, complete cds
          Length = 4914

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                    
Query: 358  ctaaataactgtctcaattttgtactagctctagtacaaa 397
            |||||||| |||||||||||||||||||||||| ||||||
Sbjct: 3962 ctaaataagtgtctcaattttgtactagctctattacaaa 4001
to top
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence
          Length = 211664

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                    
Query: 360    aaataactgtctcaattttgtactagctctagtacaaa 397
              |||||| |||||||| ||||||||||||||||||||||
Sbjct: 206038 aaataaatgtctcaactttgtactagctctagtacaaa 206075
to top
>emb|AJ249141.1|HVU249141 Hordeum vulgare mRNA for MADS-box protein (m1 gene)
          Length = 1086

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 360 aaataactgtctcaattttgtactagctctagtacaaa 397
           ||||||||||||||| |||||| |||||||||||||||
Sbjct: 930 aaataactgtctcaactttgtattagctctagtacaaa 967
to top
>emb|AJ234485.1|HVU234485 Hordeum vulgare genomic DNA fragment; clone MWG0526.rev
          Length = 379

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                 
Query: 360 aaataactgtctcaattttgtactagctctagtacaaa 397
           |||||||||||||||  |||||||||||||||||||||
Sbjct: 198 aaataactgtctcaacattgtactagctctagtacaaa 161
to top
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness
             locus region
          Length = 129099

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                    
Query: 360   aaataactgtctcaattttgtactagctctagtacaaat 398
             |||||| |||||| | |||||||||||||||||||||||
Sbjct: 31508 aaataagtgtctccactttgtactagctctagtacaaat 31470
to top
>gb|AF509744.1| Hordeum vulgare subsp. vulgare Morex receptor-like kinase gene,
            complete cds
          Length = 4643

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                   
Query: 360  aaataactgtctcaattttgtactagctctagtacaaat 398
            |||||| |||||||| |||||||||||||||||| ||||
Sbjct: 2052 aaataattgtctcaactttgtactagctctagtataaat 2090
to top
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
          Length = 124050

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 360   aaataactgtctcaattttgtactagctctagtacaaa 397
             |||||| |||||||| |||||||||| |||||||||||
Sbjct: 50413 aaataagtgtctcaactttgtactagttctagtacaaa 50450
to top
>gb|AF488415.1| Triticum monococcum chromosome 7Am BAC 5K14 complete sequence
          Length = 168746

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 360   aaataactgtctcaattttgtactagctctagtacaaa 397
             ||||||||||||||| ||||||||| || |||||||||
Sbjct: 78735 aaataactgtctcaagtttgtactaactttagtacaaa 78698
to top
>emb|X83518.1|HVKNOX3 H.vulgare Knox3 gene
          Length = 10815

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                  
Query: 360  aaataactgtctcaattttgtactagctctagtacaaa 397
            |||||| |||||||| ||||||||||||||| ||||||
Sbjct: 7217 aaataagtgtctcaactttgtactagctctactacaaa 7254
to top
>gb|AF509746.1| Hordeum vulgare subsp. spontaneum OSU6 receptor-like kinase gene,
            complete cds
          Length = 2513

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                              
Query: 360  aaataactgtctcaattttgtactagctctagta 393
            |||||| |||||||| ||||||||||||||||||
Sbjct: 1326 aaataattgtctcaactttgtactagctctagta 1359
to top
>gb|AF509745.1| Hordeum vulgare subsp. vulgare Steptoe receptor-like kinase gene,
            complete cds
          Length = 2550

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                              
Query: 360  aaataactgtctcaattttgtactagctctagta 393
            |||||| |||||||| ||||||||||||||||||
Sbjct: 1351 aaataattgtctcaactttgtactagctctagta 1384
to top
>gb|AF332169.1| Zea mays alpha-expansin (expA1) mRNA, complete cds
          Length = 1090

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 276 agagaagggaaggcctaagcgggtgctgatcagcagcagcctcggaat 323
           |||||||| || ||||||||||||||| || |  ||||||||||||||
Sbjct: 956 agagaaggaaatgcctaagcgggtgctaataataagcagcctcggaat 909
to top
>emb|AJ400714.1|TAE400714 Triticum aestivum vp1D gene for VIVIPAROUS1, exons 1-6
          Length = 4230

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 49/56 (87%), Gaps = 1/56 (1%)
 Strand = Plus / Plus

                                                                    
Query: 343  agtactccttctgtcctaaa-taactgtctcaattttgtactagctctagtacaaa 397
            ||||||||||| |||| ||| ||| ||||||||||||  |||| ||||||||||||
Sbjct: 3665 agtactccttccgtcccaaaataagtgtctcaattttacactaactctagtacaaa 3720
to top
>gb|AY104146.1| Zea mays PCO064861 mRNA sequence
          Length = 1106

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 276 agagaagggaaggcctaagcgggtgctgatcagcagcagcctcggaat 323
           |||||||| || ||||||||||||||| || |  ||||||||||||||
Sbjct: 973 agagaaggaaatgcctaagcgggtgctaataataagcagcctcggaat 926
to top
>dbj|AP001822.4| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2336M4, complete
             sequence
          Length = 134278

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 299   tgctgatcagcagcagcctcgga 321
             |||||||||||||||||||||||
Sbjct: 84419 tgctgatcagcagcagcctcgga 84397
to top
>emb|Z81506.1|CEF16H6 Caenorhabditis elegans Cosmid F16H6, complete sequence
          Length = 34378

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 140  gtacttctaaagtactctcaca 161
            ||||||||||||||||||||||
Sbjct: 8582 gtacttctaaagtactctcaca 8561
to top
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 360   aaataactgtctcaattttgtactagctctagtacaaa 397
             ||||||||||||||| |||||| ||| | |||||||||
Sbjct: 62344 aaataactgtctcaactttgtattagatttagtacaaa 62307
to top
>gb|AC007768.5| Homo sapiens chromosome 18, clone RP11-540M4, complete sequence
          Length = 175579

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 5     cataaacatgcattgtccagg 25
             |||||||||||||||||||||
Sbjct: 11859 cataaacatgcattgtccagg 11839
to top
>gb|DQ233256.1| Homo sapiens complement factor H (CFH) gene, complete cds
          Length = 99185

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   tccatgtacttctaaagtac 154
             ||||||||||||||||||||
Sbjct: 28545 tccatgtacttctaaagtac 28526
to top
>gb|BT013780.1| Lycopersicon esculentum clone 132670R, mRNA sequence
          Length = 3414

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 265 ctactagtatgagagaagggaagg 288
           |||| |||||||||||||||||||
Sbjct: 266 ctacgagtatgagagaagggaagg 289
to top
>gb|AF394544.1| Oryza sativa alpha-expansin OsEXPA2 (EXPA2) gene, complete cds
          Length = 5000

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 42/48 (87%), Gaps = 1/48 (2%)
 Strand = Plus / Minus

                                                            
Query: 285  aaggcctaagcgggtgctga-tcagcagcagcctcggaatagccaaag 331
            |||||||||||||||||| | | |  ||||||||| ||||||||||||
Sbjct: 2967 aaggcctaagcgggtgctaattaataagcagcctcagaatagccaaag 2920
to top
>gb|U30477.1|OSU30477 Oryza sativa (japonica cultivar-group) expansin Os-EXPA2 (Os-EXPA2)
            mRNA, complete cds
          Length = 1323

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 42/48 (87%), Gaps = 1/48 (2%)
 Strand = Plus / Minus

                                                            
Query: 285  aaggcctaagcgggtgctga-tcagcagcagcctcggaatagccaaag 331
            |||||||||||||||||| | | |  ||||||||| ||||||||||||
Sbjct: 1002 aaggcctaagcgggtgctaattaataagcagcctcagaatagccaaag 955
to top
>gb|AC101758.6| Mus musculus chromosome 1, clone RP24-75F14, complete sequence
          Length = 268826

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    cacaaacatttcccaatcat 70
             ||||||||||||||||||||
Sbjct: 62960 cacaaacatttcccaatcat 62979
to top
>emb|AL049744.8|HSJ177P10 Human DNA sequence from clone RP1-177P10 on chromosome 1q31.2-32.1
             Contains the HF1 gene for H factor 1 (complement) protein,
             complete sequence
          Length = 150626

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   tccatgtacttctaaagtac 154
             ||||||||||||||||||||
Sbjct: 93714 tccatgtacttctaaagtac 93733
to top
>emb|Z97339.2|ATFCA4 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 4
          Length = 205065

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 202    aacaatgattaaaatgctca 221
              ||||||||||||||||||||
Sbjct: 164276 aacaatgattaaaatgctca 164257
to top
>emb|AL161542.2|ATCHRIV42 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 42
          Length = 195068

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 202    aacaatgattaaaatgctca 221
              ||||||||||||||||||||
Sbjct: 121330 aacaatgattaaaatgctca 121311
to top
>emb|AL590153.9| Zebrafish DNA sequence from clone RP71-71M17 in linkage group 8 Contains
              a novel gene and part of a novel gene for a protein similar
              to mouse silencing mediator of retinoic acid and thyroid
              hormone receptor (SMRT), complete sequence
          Length = 133947

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 369    tctcaattttgtactagctctagt 392
              |||| |||||||||||||||||||
Sbjct: 120582 tctctattttgtactagctctagt 120559
to top
>gb|AC161493.6| Mus musculus chromosome 1, clone RP24-77I21, complete sequence
          Length = 226794

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     cacaaacatttcccaatcat 70
              ||||||||||||||||||||
Sbjct: 139013 cacaaacatttcccaatcat 139032
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 340     tgtagtactccttctgtcctaaat 363
               ||||||||||||||||||| ||||
Sbjct: 8130555 tgtagtactccttctgtcccaaat 8130578
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 42/48 (87%), Gaps = 1/48 (2%)
 Strand = Plus / Minus

                                                                
Query: 285      aaggcctaagcgggtgctga-tcagcagcagcctcggaatagccaaag 331
                |||||||||||||||||| | | |  ||||||||| ||||||||||||
Sbjct: 35140258 aaggcctaagcgggtgctaattaataagcagcctcagaatagccaaag 35140211
to top
>dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0031D02
          Length = 183692

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 42/48 (87%), Gaps = 1/48 (2%)
 Strand = Plus / Minus

                                                             
Query: 285   aaggcctaagcgggtgctga-tcagcagcagcctcggaatagccaaag 331
             |||||||||||||||||| | | |  ||||||||| ||||||||||||
Sbjct: 19342 aaggcctaagcgggtgctaattaataagcagcctcagaatagccaaag 19295
to top
>dbj|AP003348.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0485B12
          Length = 156047

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 42/48 (87%), Gaps = 1/48 (2%)
 Strand = Plus / Minus

                                                              
Query: 285    aaggcctaagcgggtgctga-tcagcagcagcctcggaatagccaaag 331
              |||||||||||||||||| | | |  ||||||||| ||||||||||||
Sbjct: 147408 aaggcctaagcgggtgctaattaataagcagcctcagaatagccaaag 147361
to top
>dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0503B05
          Length = 156814

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 340    tgtagtactccttctgtcctaaat 363
              ||||||||||||||||||| ||||
Sbjct: 118748 tgtagtactccttctgtcccaaat 118771
to top
>dbj|AK070463.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048M24, full
            insert sequence
          Length = 1341

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 42/48 (87%), Gaps = 1/48 (2%)
 Strand = Plus / Minus

                                                            
Query: 285  aaggcctaagcgggtgctga-tcagcagcagcctcggaatagccaaag 331
            |||||||||||||||||| | | |  ||||||||| ||||||||||||
Sbjct: 1017 aaggcctaagcgggtgctaattaataagcagcctcagaatagccaaag 970
to top
>emb|AL672036.6| Mouse DNA sequence from clone RP23-395P1 on chromosome X, complete
             sequence
          Length = 186034

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 360   aaataactgtctcaattttgtact 383
             |||||||| |||||||||||||||
Sbjct: 27825 aaataactatctcaattttgtact 27848


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,843,395
Number of Sequences: 3902068
Number of extensions: 3843395
Number of successful extensions: 75527
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 75406
Number of HSP's gapped (non-prelim): 124
length of query: 402
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 380
effective length of database: 17,147,199,772
effective search space: 6515935913360
effective search space used: 6515935913360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top