ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet37f10 |
|---|---|
| Clone Library Name | barley_pub |
>VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF)| Length = 2813 Score = 31.2 bits (69), Expect = 0.61 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = -1 Query: 409 PTCPRCHCLRCRPFLACPRCHC 344 PTCP L C+ CP CHC Sbjct: 2555 PTCPTGFQLSCKTSECCPTCHC 2576
>VWF_MOUSE (Q8CIZ8) Von Willebrand factor precursor (vWF) [Contains: Von| Willebrand antigen II] Length = 2813 Score = 30.8 bits (68), Expect = 0.80 Identities = 11/22 (50%), Positives = 11/22 (50%) Frame = -1 Query: 409 PTCPRCHCLRCRPFLACPRCHC 344 PTCP L C CP CHC Sbjct: 2555 PTCPTGFQLNCETSECCPSCHC 2576
>DEFR7_MOUSE (P50715) Defensin-related cryptdin, related sequence 7 precursor| (Cryptdin-related protein 4C-2) (CRS4C) Length = 91 Score = 30.4 bits (67), Expect = 1.0 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%) Frame = -1 Query: 409 PTCPRCH-CLRCRPFLACPRCHC 344 P CPRC C RC CPRC+C Sbjct: 69 PPCPRCSWCPRCP---TCPRCNC 88
>DEFR2_MOUSE (P17534) Defensin-related cryptdin, related sequence 2 precursor| (Cryptdin-related protein 4C-1) (CRS4C) (CRS4C1) Length = 91 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 1/23 (4%) Frame = -1 Query: 409 PTCPRC-HCLRCRPFLACPRCHC 344 P CPRC C C CPRC C Sbjct: 66 PQCPRCPSCPSCPRCPRCPRCKC 88
>ATS17_HUMAN (Q8TE56) ADAMTS-17 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 17) (ADAM-TS 17) (ADAM-TS17) Length = 1095 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Frame = -2 Query: 411 PRPA--QGAIASDAVRSWRAQGATAADAVCSRCAGRAIVPCTSTIDGLDVRTCPR 253 PRPA Q D + W A + A C + + V CT++ D T PR Sbjct: 908 PRPAAVQSCEGQDCLSIWEASEWSQCSASCGKGVWKRTVACTNSQGKCDASTRPR 962
>TRPD_CAUCR (Q9A728) Anthranilate phosphoribosyltransferase (EC 2.4.2.18)| Length = 341 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = -2 Query: 411 PRPAQGAIASDAVRSWRAQGATAAD-AVCSRCAGRAIVPCTSTIDGLDV 268 P PAQ A A A+R +G T + A C+R RA +P D +DV Sbjct: 35 PTPAQVAAAVTAIR---LRGETVGEIAACARAMRRAAIPLEHPYDVIDV 80
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 28.9 bits (63), Expect = 3.0 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = -1 Query: 373 PFLACPRCHCRRRRLFPVCRPC 308 PF+AC C FPVCRPC Sbjct: 54 PFVACNEC------AFPVCRPC 69
>VWF_HUMAN (P04275) Von Willebrand factor precursor (vWF) [Contains: Von| Willebrand antigen II] Length = 2813 Score = 28.9 bits (63), Expect = 3.0 Identities = 10/24 (41%), Positives = 11/24 (45%) Frame = -1 Query: 409 PTCPRCHCLRCRPFLACPRCHCRR 338 P CP L C+ CP C C R Sbjct: 2555 PVCPSGFQLSCKTSACCPSCRCER 2578
>OS25_PLARE (P19455) 25 kDa ookinete surface antigen precursor (Prs25)| Length = 217 Score = 28.5 bits (62), Expect = 4.0 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 6/106 (5%) Frame = -2 Query: 339 DAVCSR-----CAGRAIVPCTSTIDGLDVRTCPRPCMHDSRV**NCKDPTMHKPYGYFNL 175 D VC + +G C + + ++ TC + C + T++KP G F+ Sbjct: 27 DTVCKKGFLIQMSGHLECKCENDLVLVNEETCEEKVL-------KCDETTVNKPCGDFSK 79 Query: 174 IVFV*AAPVS-ACK*KSTHLFTCVVSFRLVRVVWMCVLYACTFMWC 40 + + +P+S ACK C + +V V C+L C + C Sbjct: 80 CIKIDGSPISYACK--------CNPGYDMVNNV--CILNECKNVTC 115
>LAMB2_HUMAN (P55268) Laminin beta-2 chain precursor (S-laminin) (Laminin B1s| chain) Length = 1798 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%) Frame = -1 Query: 412 SPTCPRC--HCLRCRPFLACPRC-HCRR--RRLFPVCRPC 308 +P C R HC CRP ++ RC C R +FP C PC Sbjct: 1152 TPQCHRFTGHC-SCRPGVSGVRCDQCARGFSGIFPACHPC 1190
>SAHH_METAC (Q8TRA5) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 411 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +1 Query: 94 SKRYDTRKQVGTFLLARRHRCCSNEYYQ 177 ++ DTRK + F R+ CC++EYY+ Sbjct: 81 ARALDTRKNISCFA---RYGCCTSEYYE 105
>LAMB2_RAT (P15800) Laminin beta-2 chain precursor (S-laminin) (Laminin chain| B3) Length = 1801 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%) Frame = -1 Query: 409 PTCPRC--HCLRCRPFLACPRC-HCRR--RRLFPVCRPC 308 P C R HC CRP ++ RC C R +FP C PC Sbjct: 1156 PQCHRSTGHC-SCRPGVSGVRCDQCARGFSGVFPACHPC 1193
>LAMB2_MOUSE (Q61292) Laminin beta-2 chain precursor (S-laminin) (S-LAM)| Length = 1799 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%) Frame = -1 Query: 409 PTCPRC--HCLRCRPFLACPRC-HCRR--RRLFPVCRPC 308 P C R HC CRP ++ RC C R +FP C PC Sbjct: 1154 PQCHRSTGHC-SCRPGVSGVRCDQCARGFSGVFPACHPC 1191
>PRM2_MACNE (P35298) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 103 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = +1 Query: 31 EGLAPHKCTSIKYTHPHHTHQSKRYDTRKQVGTFLLARRHRCC 159 +GL P + TH H+H +R +R+++ + RRHR C Sbjct: 34 QGLNPEHVEVYERTHRGHSHHRRRRCSRRRLHR-IHRRRHRSC 75
>PRM2_MACFU (P61253) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 103 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = +1 Query: 31 EGLAPHKCTSIKYTHPHHTHQSKRYDTRKQVGTFLLARRHRCC 159 +GL P + TH H+H +R +R+++ + RRHR C Sbjct: 34 QGLNPEHVEVYERTHRGHSHHRRRRCSRRRLHR-IHRRRHRSC 75
>PRM2_ERYPA (Q9GKM0) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 103 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/43 (30%), Positives = 24/43 (55%) Frame = +1 Query: 31 EGLAPHKCTSIKYTHPHHTHQSKRYDTRKQVGTFLLARRHRCC 159 +GL+P + TH H+H +R +++++ + RRHR C Sbjct: 34 QGLSPEHVEVYERTHQGHSHHRRRRCSQRRLHR-IHRRRHRSC 75
>IBB1_DIOGL (P82469) Bowman-Birk type proteinase inhibitor 1 (Bowman-Birk type| proteinase inhibitor I) (DgTI) Length = 67 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 3/37 (8%) Frame = -1 Query: 409 PTCPRCHCLRCRPFLACPRCHCRRRRL---FPVCRPC 308 P C RC C + P P+C C+ RL C C Sbjct: 4 PCCDRCRCTKSEP----PQCQCQDVRLNSCHSACEAC 36
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = -1 Query: 373 PFLACPRCHCRRRRLFPVCRPC 308 PF+AC C FP CRPC Sbjct: 54 PFIACNEC------AFPTCRPC 69
>LAMB3_HUMAN (Q13751) Laminin beta-3 chain precursor (Laminin 5 beta 3) (Laminin| B1k chain) (Kalinin B1 chain) Length = 1172 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 8/42 (19%) Frame = -1 Query: 409 PTCPRC--HCLRCRPFLACPRC------HCRRRRLFPVCRPC 308 P C + CL CRP L PRC +C R + C PC Sbjct: 544 PGCDKASGRCL-CRPGLTGPRCDQCQRGYCNRYPVCVACHPC 584
>FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor| Length = 4010 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +1 Query: 19 CLHIEGLAPHKCTSIKYTH 75 CL EG +PH CT + TH Sbjct: 717 CLTCEGKSPHNCTGCESTH 735
>KRA24_HUMAN (Q9BYR9) Keratin-associated protein 2-4 (Keratin-associated protein| 2.4) (High sulfur keratin-associated protein 2.4) Length = 128 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 3/37 (8%) Frame = -1 Query: 409 PTCPR---CHCLRCRPFLACPRCHCRRRRLFPVCRPC 308 P C R C CRP PRC P+C PC Sbjct: 28 PCCCRPVTCQTTVCRPVTCVPRC------TRPICEPC 58
>Y495_MYCBO (P64706) Hypothetical protein Mb0495| Length = 438 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/47 (31%), Positives = 19/47 (40%) Frame = +3 Query: 270 RLVRRWWRCKELWHGRHTGNXXXXXQWHLGHARNGRHRRQWHLGQVG 410 R ++RW R + LW G G H+ H R G W VG Sbjct: 156 RYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLG-----WRQAPVG 197
>Y485_MYCTU (P64705) Hypothetical protein Rv0485/MT0503| Length = 438 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/47 (31%), Positives = 19/47 (40%) Frame = +3 Query: 270 RLVRRWWRCKELWHGRHTGNXXXXXQWHLGHARNGRHRRQWHLGQVG 410 R ++RW R + LW G G H+ H R G W VG Sbjct: 156 RYLQRWRRRRALWVGVTLGGAVDSATGHVDHPRLG-----WRQAPVG 197
>ADA1D_MOUSE (P97714) Alpha-1D adrenergic receptor (Alpha 1D-adrenoceptor)| (Alpha 1D-adrenoreceptor) (Alpha-1A adrenergic receptor) Length = 562 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 2/24 (8%) Frame = -1 Query: 376 RPFLACPRCHC--RRRRLFPVCRP 311 R FL RC C RRRRL+P RP Sbjct: 405 RAFLRLLRCQCRRRRRRLWPSLRP 428
>UBP6_HUMAN (P35125) Ubiquitin carboxyl-terminal hydrolase 6 (EC 3.1.2.15)| (Ubiquitin thioesterase 6) (Ubiquitin-specific-processing protease 6) (Deubiquitinating enzyme 6) (Proto-oncogene TRE-2) Length = 1406 Score = 27.3 bits (59), Expect = 8.8 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 20/70 (28%) Frame = +2 Query: 260 HVRTSSPSMVEVQGTMARPAHREQTA--------------------SAAVAPWARQERTA 379 H+R S+ + QG + PA REQ + A P A+ +R Sbjct: 341 HLRASTKKLTRKQGDLPPPAKREQGSLAPRPVPASRGGKTLCKGYRQAPPGPPAQFQRPI 400 Query: 380 SEAMAPWAGR 409 A PWA R Sbjct: 401 CSASPPWASR 410
>SAC1_CHLRE (Q39593) Putative sulfur deprivation response regulator| Length = 585 Score = 27.3 bits (59), Expect = 8.8 Identities = 10/34 (29%), Positives = 19/34 (55%) Frame = +3 Query: 183 SNHMVYAWLDPCSFITLVNRACTVVGTYVRLVRR 284 +NH ++ P S+ ++ CT++GT L+ R Sbjct: 110 NNHHPSRFMMPLSYSAILGGLCTIIGTSTNLIAR 143
>OS25_PLAFO (P13829) 25 kDa ookinete surface antigen precursor (Pfs25)| Length = 217 Score = 27.3 bits (59), Expect = 8.8 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 6/106 (5%) Frame = -2 Query: 339 DAVCSR-----CAGRAIVPCTSTIDGLDVRTCPRPCMHDSRV**NCKDPTMHKPYGYFNL 175 D VC R +G C + + ++ TC + C + T++KP G F+ Sbjct: 27 DTVCKRGFLIQMSGHLECKCENDLVLVNEETCEEKVL-------KCDEKTVNKPCGDFSK 79 Query: 174 IVFV*AAPVS-ACK*KSTHLFTCVVSFRLVRVVWMCVLYACTFMWC 40 + + PVS ACK C + + +V V C+ C + C Sbjct: 80 CIKIDGNPVSYACK--------CNLGYDMVNNV--CIPNECKNVTC 115
>Y1427_HALMA (P20191) Hypothetical protein rrnAC1427| Length = 369 Score = 27.3 bits (59), Expect = 8.8 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -2 Query: 393 AIASDAVRSWRAQGATAADAVCSRCAGR 310 A++ DA+ +WR+ A DAV GR Sbjct: 252 AVSEDALAAWRSHATRAHDAVSEATTGR 279
>DNAJ_HAEIN (P43735) Chaperone protein dnaJ| Length = 382 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 8/41 (19%) Frame = -1 Query: 406 TCPRCH----CLRCRPFLA----CPRCHCRRRRLFPVCRPC 308 TCP CH R + F CP CH +++ CR C Sbjct: 163 TCPHCHGSGRIRRQQGFFVSESICPTCHGSGKKIEKPCRNC 203 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,133,817 Number of Sequences: 219361 Number of extensions: 1277418 Number of successful extensions: 3473 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 3339 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3466 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
