ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet37f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome... 167 3e-38
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 167 3e-38
3dbj|AK110277.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 5e-37
4gb|AC010034.7| Drosophila melanogaster 3L BAC RP98-4A21 (Roswell... 48 0.021
5gb|AE003474.4| Drosophila melanogaster chromosome 3L, section 8 ... 48 0.021
6emb|BX890610.8| Zebrafish DNA sequence from clone DKEY-122C9, co... 46 0.082
7gb|AC113052.10| Mus musculus chromosome 5, clone RP23-250D22, co... 44 0.32
8gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 44 0.32
9gb|AC108829.13| Mus musculus chromosome 3, clone RP23-159D18, co... 42 1.3
10gb|AC169083.1| Mus musculus chromosome 3, clone RP23-28D7, compl... 42 1.3
11gb|BC073882.1| Homo sapiens cDNA clone IMAGE:5392388, partial cds 42 1.3
12gb|L35587.1|ZEFHSP90B Danio rerio heat shock protein 90 (hsp90) ... 42 1.3
13gb|BC104654.1| Homo sapiens cDNA clone IMAGE:6738829 42 1.3
14ref|XM_852879.1| PREDICTED: Canis familiaris hypothetical protei... 42 1.3
15ref|XM_852553.1| PREDICTED: Canis familiaris similar to Phosphor... 42 1.3
16ref|XM_843877.1| PREDICTED: Canis familiaris similar to Phosphor... 42 1.3
17emb|AL807368.1|NC62D11 Neurospora crassa DNA linkage group V cos... 42 1.3
18emb|AL807373.1|NC21D9 Neurospora crassa DNA linkage group V cosm... 42 1.3
19ref|NM_131310.1| Danio rerio heat shock protein 90kDa alpha (cyt... 42 1.3
20ref|XM_688880.1| PREDICTED: Danio rerio similar to GTPase, IMAP ... 42 1.3
21emb|BX004816.11| Zebrafish DNA sequence from clone DKEY-30G5 in ... 42 1.3
22gb|AC106886.3| Homo sapiens chromosome 16 clone RP11-2C24, compl... 42 1.3
23ref|XM_238138.2| PREDICTED: Rattus norvegicus hypothetical LOC29... 42 1.3
24emb|AJ621045.1| Lethocerus indicus mRNA for troponin I protein (... 42 1.3
25dbj|AB002307.2| Homo sapiens mRNA for KIAA0309 gene, partial cds 42 1.3
26gb|BC090756.1| Danio rerio cDNA clone IMAGE:7137807 42 1.3
27gb|AC119234.10| Mus musculus chromosome 19, clone RP24-211P24, c... 42 1.3
28dbj|D50838.1|CREACTINA Chlamydomonas reinhardtii gene for actin,... 42 1.3
29gb|AF042108.1|AF042108 Danio rerio heat shock protein 90-beta (h... 42 1.3
30gb|AC139326.5| Mus musculus BAC clone RP24-341F20 from chromosom... 42 1.3
31dbj|D50839.1|CREACTINB Chlamydomonas reinhardtii mRNA for actin,... 42 1.3
32dbj|D88148.1| Neurospora crassa mRNA for nucleoside diphosphate ... 42 1.3
33ref|NM_120948.3| Arabidopsis thaliana ATP binding / ATP-dependen... 40 5.1
34ref|NM_186284.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.1
35gb|AC131079.11| Mus musculus chromosome 14, clone RP23-434L17, c... 40 5.1
36ref|XM_715616.1| Candida albicans SC5314 hypothetical protein (C... 40 5.1
37ref|XM_715488.1| Candida albicans SC5314 hypothetical protein (C... 40 5.1
38gb|BC064176.1| Xenopus tropicalis RIKEN cDNA 1810034M08 gene, mR... 40 5.1
39gb|BC065180.1| Homo sapiens hypothetical protein LOC144501, mRNA... 40 5.1
40emb|CT025420.2| Xenopus tropicalis finished cDNA, clone TGas047m13 40 5.1
41gb|AF192329.1| Enterococcus faecalis transposon Tn1549, complete... 40 5.1
42gb|AF078783.1| Caenorhabditis elegans fosmid H10E21, complete se... 40 5.1
43gb|BC047308.1| Homo sapiens hypothetical protein LOC144501, mRNA... 40 5.1
44gb|BC033114.1| Homo sapiens hypothetical protein LOC144501, mRNA... 40 5.1
45gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 5.1
46emb|BX067200.1|CNS09O0K Single read from an extremity of a full-... 40 5.1
47gb|AC008083.23| Homo sapiens 12 BAC RP11-493L12 (Roswell Park Ca... 40 5.1
48emb|BX537567.1|HSM806188 Homo sapiens mRNA; cDNA DKFZp686J1375 (... 40 5.1
49ref|NM_203994.1| Xenopus tropicalis RIKEN cDNA 1810034M08 gene (... 40 5.1
50gb|AF227508.1| Rattus norvegicus intestinal alkaline phosphatase... 40 5.1
51ref|NM_064724.1| Caenorhabditis elegans H10E21.2 (H10E21.2) mRNA... 40 5.1
52dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
53emb|BX832919.1|CNS09Z0J Arabidopsis thaliana Full-length cDNA Co... 40 5.1
54gb|AC012513.12| Homo sapiens BAC clone RP11-566E18 from 2, compl... 40 5.1
55ref|NM_182507.1| Homo sapiens hypothetical protein LOC144501 (LO... 40 5.1
56gb|AC021066.37| Homo sapiens 12 BAC RP11-845M18 (Roswell Park Ca... 40 5.1
57dbj|AP005473.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
58dbj|AB006697.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.1
59ref|XM_309977.2| Anopheles gambiae str. PEST ENSANGP00000015913 ... 40 5.1
60gb|AC008123.9|AC008123 Homo sapiens 2q35 BAC RPCI11-1064L18 (Ros... 40 5.1
61dbj|AP003824.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
62gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 5.1
63gb|U88822.1|U88822 HIV-1 isolate 84zr085 from Zaire complete genome 40 5.1
64emb|AL954655.9| Zebrafish DNA sequence from clone CH211-226H7, c... 40 5.1
65emb|AL935141.16| Zebrafish DNA sequence from clone CH211-173A9 i... 40 5.1
66gb|AC004242.1|AC004242 Homo sapiens 12q13 PAC RPCI1-316M24 (Rosw... 40 5.1
67emb|AL162069.1|HSM802600 Homo sapiens mRNA; cDNA DKFZp762H106 (f... 40 5.1 
>gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_B02,
             complete sequence
          Length = 99795

 Score =  167 bits (84), Expect = 3e-38
 Identities = 123/136 (90%)
 Strand = Plus / Plus

                                                                         
Query: 204   gtgacgttggacacgagctccctgaggaacctggccgacttggtcaccggcgagttggcg 263
             ||||| |||||||||||| ||| |||||| || ||||||||||||||||||||||| |||
Sbjct: 81062 gtgacattggacacgagcccccggaggaatcttgccgacttggtcaccggcgagtttgcg 81121

                                                                         
Query: 264   gccatgaggttgtacatcatgttctccacctcgccggtcgtcggccggcgcttcatccgc 323
             ||||||| |||||||| |||| |||||||||||||| |||||||||| ||||||| ||||
Sbjct: 81122 gccatgacgttgtacagcatggtctccacctcgccgatcgtcggccgccgcttcagccgc 81181

                             
Query: 324   gacaccaccttcaact 339
             ||||||||||| ||||
Sbjct: 81182 gacaccaccttgaact 81197



 Score = 46.1 bits (23), Expect = 0.082
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 354   tcgtcctccatcatgagcacccagctc 380
             |||||||||| ||||||||||||||||
Sbjct: 81221 tcgtcctccaccatgagcacccagctc 81247
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  167 bits (84), Expect = 3e-38
 Identities = 123/136 (90%)
 Strand = Plus / Plus

                                                                            
Query: 204      gtgacgttggacacgagctccctgaggaacctggccgacttggtcaccggcgagttggcg 263
                ||||| |||||||||||| ||| |||||| || ||||||||||||||||||||||| |||
Sbjct: 24478389 gtgacattggacacgagcccccggaggaatcttgccgacttggtcaccggcgagtttgcg 24478448

                                                                            
Query: 264      gccatgaggttgtacatcatgttctccacctcgccggtcgtcggccggcgcttcatccgc 323
                ||||||| |||||||| |||| |||||||||||||| |||||||||| ||||||| ||||
Sbjct: 24478449 gccatgacgttgtacagcatggtctccacctcgccgatcgtcggccgccgcttcagccgc 24478508

                                
Query: 324      gacaccaccttcaact 339
                ||||||||||| ||||
Sbjct: 24478509 gacaccaccttgaact 24478524



 Score = 46.1 bits (23), Expect = 0.082
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 354      tcgtcctccatcatgagcacccagctc 380
                |||||||||| ||||||||||||||||
Sbjct: 24478548 tcgtcctccaccatgagcacccagctc 24478574
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>dbj|AK110277.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-D09, full
            insert sequence
          Length = 1194

 Score =  163 bits (82), Expect = 5e-37
 Identities = 118/130 (90%)
 Strand = Plus / Minus

                                                                        
Query: 204  gtgacgttggacacgagctccctgaggaacctggccgacttggtcaccggcgagttggcg 263
            ||||| |||||||||||| ||| |||||| || ||||||||||||||||||||||| |||
Sbjct: 1007 gtgacattggacacgagcccccggaggaatcttgccgacttggtcaccggcgagtttgcg 948

                                                                        
Query: 264  gccatgaggttgtacatcatgttctccacctcgccggtcgtcggccggcgcttcatccgc 323
            ||||||| |||||||| |||| |||||||||||||| |||||||||| ||||||| ||||
Sbjct: 947  gccatgacgttgtacagcatggtctccacctcgccgatcgtcggccgccgcttcagccgc 888

                      
Query: 324  gacaccacct 333
            ||||||||||
Sbjct: 887  gacaccacct 878



 Score = 46.1 bits (23), Expect = 0.082
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 354 tcgtcctccatcatgagcacccagctc 380
           |||||||||| ||||||||||||||||
Sbjct: 848 tcgtcctccaccatgagcacccagctc 822
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>gb|AC010034.7| Drosophila melanogaster 3L BAC RP98-4A21 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 154234

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 338   ctccggctccttctcctcgtcctccatcatga 369
             |||||| |||||||||||||||||| ||||||
Sbjct: 90976 ctccggttccttctcctcgtcctccttcatga 91007
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>gb|AE003474.4| Drosophila melanogaster chromosome 3L, section 8 of 83 of the complete
             sequence
          Length = 312072

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 338   ctccggctccttctcctcgtcctccatcatga 369
             |||||| |||||||||||||||||| ||||||
Sbjct: 31867 ctccggttccttctcctcgtcctccttcatga 31898
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>emb|BX890610.8| Zebrafish DNA sequence from clone DKEY-122C9, complete sequence
          Length = 189827

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 345    tccttctcctcgtcctccatcat 367
              |||||||||||||||||||||||
Sbjct: 140064 tccttctcctcgtcctccatcat 140086
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>gb|AC113052.10| Mus musculus chromosome 5, clone RP23-250D22, complete sequence
          Length = 193698

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 63     atttacaaaaccaaacatgttg 84
              ||||||||||||||||||||||
Sbjct: 143181 atttacaaaaccaaacatgttg 143160
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 286    tctccacctcgccggtcgtcggccgg 311
              |||| |||||||||||||||||||||
Sbjct: 546061 tctcgacctcgccggtcgtcggccgg 546086
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>gb|AC108829.13| Mus musculus chromosome 3, clone RP23-159D18, complete sequence
          Length = 184470

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 63     atttacaaaaccaaacatgtt 83
              |||||||||||||||||||||
Sbjct: 139292 atttacaaaaccaaacatgtt 139272
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>gb|AC169083.1| Mus musculus chromosome 3, clone RP23-28D7, complete sequence
          Length = 215143

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 63    atttacaaaaccaaacatgtt 83
             |||||||||||||||||||||
Sbjct: 42327 atttacaaaaccaaacatgtt 42347
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>gb|BC073882.1| Homo sapiens cDNA clone IMAGE:5392388, partial cds
          Length = 1041

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 346 ccttctcctcgtcctccatca 366
           |||||||||||||||||||||
Sbjct: 349 ccttctcctcgtcctccatca 329
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>gb|L35587.1|ZEFHSP90B Danio rerio heat shock protein 90 (hsp90) mRNA, partial cds
          Length = 305

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 208 cgttggacacgagctccctgaggaa 232
           ||||||| |||||||||||||||||
Sbjct: 43  cgttggaaacgagctccctgaggaa 19
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>gb|BC104654.1| Homo sapiens cDNA clone IMAGE:6738829
          Length = 765

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 346 ccttctcctcgtcctccatca 366
           |||||||||||||||||||||
Sbjct: 93  ccttctcctcgtcctccatca 73
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>ref|XM_852879.1| PREDICTED: Canis familiaris hypothetical protein LOC607399
           (LOC607399), mRNA
          Length = 873

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 346 ccttctcctcgtcctccatca 366
           |||||||||||||||||||||
Sbjct: 236 ccttctcctcgtcctccatca 216
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>ref|XM_852553.1| PREDICTED: Canis familiaris similar to Phosphorylase b kinase gamma
           catalytic chain, testis/liver isoform (PHK-gamma-T)
           (Phosphorylase kinase gamma subunit 2) (PSK-C3),
           transcript variant 2 (LOC607275), mRNA
          Length = 1843

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 346 ccttctcctcgtcctccatca 366
           |||||||||||||||||||||
Sbjct: 176 ccttctcctcgtcctccatca 156
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>ref|XM_843877.1| PREDICTED: Canis familiaris similar to Phosphorylase b kinase gamma
           catalytic chain, testis/liver isoform (PHK-gamma-T)
           (Phosphorylase kinase gamma subunit 2) (PSK-C3),
           transcript variant 1 (LOC607275), mRNA
          Length = 1907

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 346 ccttctcctcgtcctccatca 366
           |||||||||||||||||||||
Sbjct: 176 ccttctcctcgtcctccatca 156
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>emb|AL807368.1|NC62D11 Neurospora crassa DNA linkage group V cosmid contig 62D11
          Length = 102165

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 343   gctccttctcctcgtcctccatcat 367
             ||||||||||||| |||||||||||
Sbjct: 15353 gctccttctcctcctcctccatcat 15329
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>emb|AL807373.1|NC21D9 Neurospora crassa DNA linkage group V cosmid contig 21D9
          Length = 55380

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 343  gctccttctcctcgtcctccatcat 367
            ||||||||||||| |||||||||||
Sbjct: 4050 gctccttctcctcctcctccatcat 4074
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>ref|NM_131310.1| Danio rerio heat shock protein 90kDa alpha (cytosolic), class B
           member 1 (hsp90ab1), mRNA
          Length = 2642

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 208 cgttggacacgagctccctgaggaa 232
           ||||||| |||||||||||||||||
Sbjct: 183 cgttggaaacgagctccctgaggaa 159
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>ref|XM_688880.1| PREDICTED: Danio rerio similar to GTPase, IMAP family member 5
           (LOC565611), partial mRNA
          Length = 899

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 347 cttctcctcgtcctccatcat 367
           |||||||||||||||||||||
Sbjct: 698 cttctcctcgtcctccatcat 678
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>emb|BX004816.11| Zebrafish DNA sequence from clone DKEY-30G5 in linkage group 3, complete
              sequence
          Length = 231341

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 347    cttctcctcgtcctccatcat 367
              |||||||||||||||||||||
Sbjct: 125501 cttctcctcgtcctccatcat 125481
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>gb|AC106886.3| Homo sapiens chromosome 16 clone RP11-2C24, complete sequence
          Length = 207950

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 346    ccttctcctcgtcctccatca 366
              |||||||||||||||||||||
Sbjct: 120695 ccttctcctcgtcctccatca 120675
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>ref|XM_238138.2| PREDICTED: Rattus norvegicus hypothetical LOC293513 (LOC293513),
           mRNA
          Length = 373

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 346 ccttctcctcgtcctccatca 366
           |||||||||||||||||||||
Sbjct: 62  ccttctcctcgtcctccatca 42
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>emb|AJ621045.1| Lethocerus indicus mRNA for troponin I protein (TnI2 gene)
          Length = 1101

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 341 cggctccttctcctcgtcctccatc 365
           ||||||||||||||| |||||||||
Sbjct: 628 cggctccttctcctcctcctccatc 604
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>dbj|AB002307.2| Homo sapiens mRNA for KIAA0309 gene, partial cds
          Length = 10802

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 346   ccttctcctcgtcctccatca 366
             |||||||||||||||||||||
Sbjct: 10159 ccttctcctcgtcctccatca 10139
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>gb|BC090756.1| Danio rerio cDNA clone IMAGE:7137807
          Length = 1625

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 208 cgttggacacgagctccctgaggaa 232
           ||||||| |||||||||||||||||
Sbjct: 952 cgttggaaacgagctccctgaggaa 928
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>gb|AC119234.10| Mus musculus chromosome 19, clone RP24-211P24, complete sequence
          Length = 143832

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 185    ctccttccccttccttcccgt 205
              |||||||||||||||||||||
Sbjct: 130805 ctccttccccttccttcccgt 130785
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>dbj|D50838.1|CREACTINA Chlamydomonas reinhardtii gene for actin, complete cds
          Length = 4590

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 317  catccgcgacaccaccttcaactcc 341
            ||||| |||||||||||||||||||
Sbjct: 3409 catccacgacaccaccttcaactcc 3433
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>gb|AF042108.1|AF042108 Danio rerio heat shock protein 90-beta (hsp90beta) mRNA, complete
           cds
          Length = 2642

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 208 cgttggacacgagctccctgaggaa 232
           ||||||| |||||||||||||||||
Sbjct: 183 cgttggaaacgagctccctgaggaa 159
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>gb|AC139326.5| Mus musculus BAC clone RP24-341F20 from chromosome 3, complete sequence
          Length = 141290

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 63    atttacaaaaccaaacatgtt 83
             |||||||||||||||||||||
Sbjct: 94760 atttacaaaaccaaacatgtt 94780
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>dbj|D50839.1|CREACTINB Chlamydomonas reinhardtii mRNA for actin, complete cds
          Length = 1802

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 317 catccgcgacaccaccttcaactcc 341
           ||||| |||||||||||||||||||
Sbjct: 868 catccacgacaccaccttcaactcc 892
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>dbj|D88148.1| Neurospora crassa mRNA for nucleoside diphosphate kinase, complete
            cds
          Length = 4240

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 343  gctccttctcctcgtcctccatcat 367
            ||||||||||||| |||||||||||
Sbjct: 2684 gctccttctcctcctcctccatcat 2708
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>ref|NM_120948.3| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/
            nucleic acid binding AT5G08610 mRNA, complete cds
          Length = 2755

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 184  actccttccccttccttccc 203
            ||||||||||||||||||||
Sbjct: 2268 actccttccccttccttccc 2249
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>ref|NM_186284.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 474

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 343 gctccttctcctcgtcctcc 362
           ||||||||||||||||||||
Sbjct: 238 gctccttctcctcgtcctcc 219
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>gb|AC131079.11| Mus musculus chromosome 14, clone RP23-434L17, complete sequence
          Length = 203276

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 344   ctccttctcctcgtcctccatcat 367
             |||||||||||| |||||||||||
Sbjct: 73653 ctccttctcctcctcctccatcat 73676
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>ref|XM_715616.1| Candida albicans SC5314 hypothetical protein (CaO19_11749), mRNA
          Length = 2760

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 344  ctccttctcctcgtcctccatcat 367
            |||||||||||| |||||||||||
Sbjct: 2542 ctccttctcctcctcctccatcat 2519
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>ref|XM_715488.1| Candida albicans SC5314 hypothetical protein (CaO19_4273), mRNA
          Length = 2760

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 344  ctccttctcctcgtcctccatcat 367
            |||||||||||| |||||||||||
Sbjct: 2542 ctccttctcctcctcctccatcat 2519
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>gb|BC064176.1| Xenopus tropicalis RIKEN cDNA 1810034M08 gene, mRNA (cDNA clone
           MGC:75657 IMAGE:5379754), complete cds
          Length = 1222

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 62  gatttacaaaaccaaacatgttgctgca 89
           |||||||||||||||| || ||||||||
Sbjct: 993 gatttacaaaaccaaaaatattgctgca 966
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>gb|BC065180.1| Homo sapiens hypothetical protein LOC144501, mRNA (cDNA clone
            MGC:71341 IMAGE:6573884), complete cds
          Length = 3910

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 180  tctcactccttccccttcct 199
            ||||||||||||||||||||
Sbjct: 2591 tctcactccttccccttcct 2610
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>emb|CT025420.2| Xenopus tropicalis finished cDNA, clone TGas047m13
          Length = 1240

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 62   gatttacaaaaccaaacatgttgctgca 89
            |||||||||||||||| || ||||||||
Sbjct: 1038 gatttacaaaaccaaaaatattgctgca 1011
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>gb|AF192329.1| Enterococcus faecalis transposon Tn1549, complete sequence
          Length = 33805

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 282  atgttctccacctcgccggt 301
            ||||||||||||||||||||
Sbjct: 8753 atgttctccacctcgccggt 8734
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>gb|AF078783.1| Caenorhabditis elegans fosmid H10E21, complete sequence
          Length = 31876

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 340  ccggctccttctcctcgtcctcca 363
            |||||||| |||||||||||||||
Sbjct: 7952 ccggctccgtctcctcgtcctcca 7929
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>gb|BC047308.1| Homo sapiens hypothetical protein LOC144501, mRNA (cDNA clone
            IMAGE:5104138), with apparent retained intron
          Length = 3585

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 180  tctcactccttccccttcct 199
            ||||||||||||||||||||
Sbjct: 2267 tctcactccttccccttcct 2286
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>gb|BC033114.1| Homo sapiens hypothetical protein LOC144501, mRNA (cDNA clone
            IMAGE:5445923), with apparent retained intron
          Length = 3910

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 180  tctcactccttccccttcct 199
            ||||||||||||||||||||
Sbjct: 2591 tctcactccttccccttcct 2610
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 309     cggcgcttcatccgcgacaccacc 332
               ||||||| ||||||||||||||||
Sbjct: 3185185 cggcgctccatccgcgacaccacc 3185208
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>emb|BX067200.1|CNS09O0K Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC50DB05 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 581

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 331 ccttcaactccggctccttctcct 354
           |||||||||||| |||||||||||
Sbjct: 278 ccttcaactccgcctccttctcct 301
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>gb|AC008083.23| Homo sapiens 12 BAC RP11-493L12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 192046

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 93     ccacccattttcagagtttcaggcaatg 120
              ||||||||||||||||| ||||| ||||
Sbjct: 151273 ccacccattttcagagtgtcaggaaatg 151300
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>emb|BX537567.1|HSM806188 Homo sapiens mRNA; cDNA DKFZp686J1375 (from clone DKFZp686J1375);
            complete cds
          Length = 3411

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 180  tctcactccttccccttcct 199
            ||||||||||||||||||||
Sbjct: 2614 tctcactccttccccttcct 2633
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>ref|NM_203994.1| Xenopus tropicalis RIKEN cDNA 1810034M08 gene (1810034m08rik), mRNA
          Length = 1222

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 62  gatttacaaaaccaaacatgttgctgca 89
           |||||||||||||||| || ||||||||
Sbjct: 993 gatttacaaaaccaaaaatattgctgca 966
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>gb|AF227508.1| Rattus norvegicus intestinal alkaline phosphatase-II (IAP-II) gene,
            complete cds
          Length = 6359

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 176  ccaatctcactccttccccttccttccc 203
            |||| |||||||||||||||||| ||||
Sbjct: 2631 ccaacctcactccttccccttccctccc 2604
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>ref|NM_064724.1| Caenorhabditis elegans H10E21.2 (H10E21.2) mRNA, complete cds
          Length = 1149

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 340  ccggctccttctcctcgtcctcca 363
            |||||||| |||||||||||||||
Sbjct: 1067 ccggctccgtctcctcgtcctcca 1044
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 343     gctccttctcctcgtcctcc 362
               ||||||||||||||||||||
Sbjct: 2318236 gctccttctcctcgtcctcc 2318255
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>emb|BX832919.1|CNS09Z0J Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL22ZC12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 557

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 actccttccccttccttccc 203
           ||||||||||||||||||||
Sbjct: 65  actccttccccttccttccc 46
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>gb|AC012513.12| Homo sapiens BAC clone RP11-566E18 from 2, complete sequence
          Length = 164935

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   gtttcaggcaatggcacagc 127
             ||||||||||||||||||||
Sbjct: 19304 gtttcaggcaatggcacagc 19285
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>ref|NM_182507.1| Homo sapiens hypothetical protein LOC144501 (LOC144501), mRNA
          Length = 3411

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 180  tctcactccttccccttcct 199
            ||||||||||||||||||||
Sbjct: 2614 tctcactccttccccttcct 2633
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>gb|AC021066.37| Homo sapiens 12 BAC RP11-845M18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 158285

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    tctcactccttccccttcct 199
              ||||||||||||||||||||
Sbjct: 111903 tctcactccttccccttcct 111922
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>dbj|AP005473.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0077B15
          Length = 139345

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   gctccttctcctcgtcctcc 362
             ||||||||||||||||||||
Sbjct: 21244 gctccttctcctcgtcctcc 21263
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>dbj|AB006697.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAH20
          Length = 80970

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   actccttccccttccttccc 203
             ||||||||||||||||||||
Sbjct: 61033 actccttccccttccttccc 61014
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>ref|XM_309977.2| Anopheles gambiae str. PEST ENSANGP00000015913 (ENSANGG00000013424),
            partial mRNA
          Length = 1254

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 331  ccttcaactccggctccttctcct 354
            |||||||||||| |||||||||||
Sbjct: 1078 ccttcaactccgcctccttctcct 1055
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>gb|AC008123.9|AC008123 Homo sapiens 2q35 BAC RPCI11-1064L18 (Roswell Park Cancer Institute
            Human BAC Library) complete sequence
          Length = 168601

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  gtttcaggcaatggcacagc 127
            ||||||||||||||||||||
Sbjct: 8714 gtttcaggcaatggcacagc 8695
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>dbj|AP003824.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1343_B12
          Length = 121362

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   gctccttctcctcgtcctcc 362
             ||||||||||||||||||||
Sbjct: 91935 gctccttctcctcgtcctcc 91954
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 293     ctcgccggtcgtcggccggc 312
               ||||||||||||||||||||
Sbjct: 1872423 ctcgccggtcgtcggccggc 1872404
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>gb|U88822.1|U88822 HIV-1 isolate 84zr085 from Zaire complete genome
          Length = 8975

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 345  tccttctcctcgtcctccat 364
            ||||||||||||||||||||
Sbjct: 8880 tccttctcctcgtcctccat 8861
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>emb|AL954655.9| Zebrafish DNA sequence from clone CH211-226H7, complete sequence
          Length = 207351

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   tccgcgacaccaccttcaac 338
             ||||||||||||||||||||
Sbjct: 45198 tccgcgacaccaccttcaac 45217
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>emb|AL935141.16| Zebrafish DNA sequence from clone CH211-173A9 in linkage group 17,
             complete sequence
          Length = 136178

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   tccgcgacaccaccttcaac 338
             ||||||||||||||||||||
Sbjct: 74937 tccgcgacaccaccttcaac 74956
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>gb|AC004242.1|AC004242 Homo sapiens 12q13 PAC RPCI1-316M24 (Roswell Park Cancer Institute
            Human PAC library) complete sequence
          Length = 104913

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 93   ccacccattttcagagtttcaggcaatg 120
            ||||||||||||||||| ||||| ||||
Sbjct: 2030 ccacccattttcagagtgtcaggaaatg 2003
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>emb|AL162069.1|HSM802600 Homo sapiens mRNA; cDNA DKFZp762H106 (from clone DKFZp762H106)
          Length = 2140

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 180 tctcactccttccccttcct 199
           ||||||||||||||||||||
Sbjct: 821 tctcactccttccccttcct 840


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,598,128
Number of Sequences: 3902068
Number of extensions: 3598128
Number of successful extensions: 90896
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90650
Number of HSP's gapped (non-prelim): 246
length of query: 380
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 358
effective length of database: 17,147,199,772
effective search space: 6138697518376
effective search space used: 6138697518376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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