ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet37f02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191551.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1290 Score = 258 bits (130), Expect = 1e-65 Identities = 187/206 (90%) Strand = Plus / Minus Query: 237 agccgcggcgggtccagacgacgtggtcctgcggcaggaagtggcacaccggcgcgccgc 296 |||||| ||| ||||||||||||||||||||||||||||||||||| |||||| | || Sbjct: 1288 agccgctgcgtgtccagacgacgtggtcctgcggcaggaagtggcagaccggcaccgtgc 1229 Query: 297 cgggcttcaccttgagcacctggaacgcgacgtgccccgggttccagccggccgtgtcgg 356 | ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 1228 ctggcttcaccttgagcacctggaacgcgacgtgcttcgggttccacccggccgtgtcgg 1169 Query: 357 cgtggcacaccgcgacggcctccaccgccgtgccgtccctgccgaccatggacaccgtgt 416 ||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| || Sbjct: 1168 cgtggcacaccgcgacggcctccacgcccgtgccgtccctgccggccatcgacaccgcgt 1109 Query: 417 acgccctggtcgcctgcgtcaggtgg 442 |||||| |||||| ||||||||||| Sbjct: 1108 acgcccgcgtcgcccgcgtcaggtgg 1083
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 258 bits (130), Expect = 1e-65 Identities = 187/206 (90%) Strand = Plus / Minus Query: 237 agccgcggcgggtccagacgacgtggtcctgcggcaggaagtggcacaccggcgcgccgc 296 |||||| ||| ||||||||||||||||||||||||||||||||||| |||||| | || Sbjct: 30585516 agccgctgcgtgtccagacgacgtggtcctgcggcaggaagtggcagaccggcaccgtgc 30585457 Query: 297 cgggcttcaccttgagcacctggaacgcgacgtgccccgggttccagccggccgtgtcgg 356 | ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 30585456 ctggcttcaccttgagcacctggaacgcgacgtgcttcgggttccacccggccgtgtcgg 30585397 Query: 357 cgtggcacaccgcgacggcctccaccgccgtgccgtccctgccgaccatggacaccgtgt 416 ||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| || Sbjct: 30585396 cgtggcacaccgcgacggcctccacgcccgtgccgtccctgccggccatcgacaccgcgt 30585337 Query: 417 acgccctggtcgcctgcgtcaggtgg 442 |||||| |||||| ||||||||||| Sbjct: 30585336 acgcccgcgtcgcccgcgtcaggtgg 30585311
>dbj|AP003309.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0036G09 Length = 124118 Score = 258 bits (130), Expect = 1e-65 Identities = 187/206 (90%) Strand = Plus / Minus Query: 237 agccgcggcgggtccagacgacgtggtcctgcggcaggaagtggcacaccggcgcgccgc 296 |||||| ||| ||||||||||||||||||||||||||||||||||| |||||| | || Sbjct: 68120 agccgctgcgtgtccagacgacgtggtcctgcggcaggaagtggcagaccggcaccgtgc 68061 Query: 297 cgggcttcaccttgagcacctggaacgcgacgtgccccgggttccagccggccgtgtcgg 356 | ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 68060 ctggcttcaccttgagcacctggaacgcgacgtgcttcgggttccacccggccgtgtcgg 68001 Query: 357 cgtggcacaccgcgacggcctccaccgccgtgccgtccctgccgaccatggacaccgtgt 416 ||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| || Sbjct: 68000 cgtggcacaccgcgacggcctccacgcccgtgccgtccctgccggccatcgacaccgcgt 67941 Query: 417 acgccctggtcgcctgcgtcaggtgg 442 |||||| |||||| ||||||||||| Sbjct: 67940 acgcccgcgtcgcccgcgtcaggtgg 67915
>dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1060H01 Length = 157987 Score = 258 bits (130), Expect = 1e-65 Identities = 187/206 (90%) Strand = Plus / Minus Query: 237 agccgcggcgggtccagacgacgtggtcctgcggcaggaagtggcacaccggcgcgccgc 296 |||||| ||| ||||||||||||||||||||||||||||||||||| |||||| | || Sbjct: 27793 agccgctgcgtgtccagacgacgtggtcctgcggcaggaagtggcagaccggcaccgtgc 27734 Query: 297 cgggcttcaccttgagcacctggaacgcgacgtgccccgggttccagccggccgtgtcgg 356 | ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 27733 ctggcttcaccttgagcacctggaacgcgacgtgcttcgggttccacccggccgtgtcgg 27674 Query: 357 cgtggcacaccgcgacggcctccaccgccgtgccgtccctgccgaccatggacaccgtgt 416 ||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| || Sbjct: 27673 cgtggcacaccgcgacggcctccacgcccgtgccgtccctgccggccatcgacaccgcgt 27614 Query: 417 acgccctggtcgcctgcgtcaggtgg 442 |||||| |||||| ||||||||||| Sbjct: 27613 acgcccgcgtcgcccgcgtcaggtgg 27588
>dbj|AK106043.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-E03, full insert sequence Length = 1617 Score = 258 bits (130), Expect = 1e-65 Identities = 187/206 (90%) Strand = Plus / Minus Query: 237 agccgcggcgggtccagacgacgtggtcctgcggcaggaagtggcacaccggcgcgccgc 296 |||||| ||| ||||||||||||||||||||||||||||||||||| |||||| | || Sbjct: 1362 agccgctgcgtgtccagacgacgtggtcctgcggcaggaagtggcagaccggcaccgtgc 1303 Query: 297 cgggcttcaccttgagcacctggaacgcgacgtgccccgggttccagccggccgtgtcgg 356 | ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 1302 ctggcttcaccttgagcacctggaacgcgacgtgcttcgggttccacccggccgtgtcgg 1243 Query: 357 cgtggcacaccgcgacggcctccaccgccgtgccgtccctgccgaccatggacaccgtgt 416 ||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| || Sbjct: 1242 cgtggcacaccgcgacggcctccacgcccgtgccgtccctgccggccatcgacaccgcgt 1183 Query: 417 acgccctggtcgcctgcgtcaggtgg 442 |||||| |||||| ||||||||||| Sbjct: 1182 acgcccgcgtcgcccgcgtcaggtgg 1157
>dbj|AK065358.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013011A15, full insert sequence Length = 1618 Score = 258 bits (130), Expect = 1e-65 Identities = 187/206 (90%) Strand = Plus / Minus Query: 237 agccgcggcgggtccagacgacgtggtcctgcggcaggaagtggcacaccggcgcgccgc 296 |||||| ||| ||||||||||||||||||||||||||||||||||| |||||| | || Sbjct: 1363 agccgctgcgtgtccagacgacgtggtcctgcggcaggaagtggcagaccggcaccgtgc 1304 Query: 297 cgggcttcaccttgagcacctggaacgcgacgtgccccgggttccagccggccgtgtcgg 356 | ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 1303 ctggcttcaccttgagcacctggaacgcgacgtgcttcgggttccacccggccgtgtcgg 1244 Query: 357 cgtggcacaccgcgacggcctccaccgccgtgccgtccctgccgaccatggacaccgtgt 416 ||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| || Sbjct: 1243 cgtggcacaccgcgacggcctccacgcccgtgccgtccctgccggccatcgacaccgcgt 1184 Query: 417 acgccctggtcgcctgcgtcaggtgg 442 |||||| |||||| ||||||||||| Sbjct: 1183 acgcccgcgtcgcccgcgtcaggtgg 1158
>dbj|AK059056.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-F04, full insert sequence Length = 1616 Score = 258 bits (130), Expect = 1e-65 Identities = 187/206 (90%) Strand = Plus / Minus Query: 237 agccgcggcgggtccagacgacgtggtcctgcggcaggaagtggcacaccggcgcgccgc 296 |||||| ||| ||||||||||||||||||||||||||||||||||| |||||| | || Sbjct: 1354 agccgctgcgtgtccagacgacgtggtcctgcggcaggaagtggcagaccggcaccgtgc 1295 Query: 297 cgggcttcaccttgagcacctggaacgcgacgtgccccgggttccagccggccgtgtcgg 356 | ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 1294 ctggcttcaccttgagcacctggaacgcgacgtgcttcgggttccacccggccgtgtcgg 1235 Query: 357 cgtggcacaccgcgacggcctccaccgccgtgccgtccctgccgaccatggacaccgtgt 416 ||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| || Sbjct: 1234 cgtggcacaccgcgacggcctccacgcccgtgccgtccctgccggccatcgacaccgcgt 1175 Query: 417 acgccctggtcgcctgcgtcaggtgg 442 |||||| |||||| ||||||||||| Sbjct: 1174 acgcccgcgtcgcccgcgtcaggtgg 1149
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 69.9 bits (35), Expect = 7e-09 Identities = 158/199 (79%) Strand = Plus / Minus Query: 233 catcagccgcggcgggtccagacgacgtggtcctgcggcaggaagtggcacaccggcgcg 292 |||||||| ||||||||||||||||| ||| || ||| ||||||||| |||||| | Sbjct: 8383499 catcagccacggcgggtccagacgacaacgtcaggctgcacgaagtggcagaccggcacc 8383440 Query: 293 ccgccgggcttcaccttgagcacctggaacgcgacgtgccccgggttccagccggccgtg 352 || ||||| || |||||||||||| || ||||| |||||||| | |||||| Sbjct: 8383439 gtcccaggcttgacgccgagcacctggaaggcagcgtgctttgggttccactctgccgtg 8383380 Query: 353 tcggcgtggcacaccgcgacggcctccaccgccgtgccgtccctgccgaccatggacacc 412 |||| |||||| || ||||| ||||||||||||| ||||| ||||||||| ||| || Sbjct: 8383379 tcggtgtggcatacggcgaccgcctccaccgccgcaccgtctttgccgaccaacgacgcc 8383320 Query: 413 gtgtacgccctggtcgcct 431 |||||||||| ||||||| Sbjct: 8383319 ttgtacgccctcgtcgcct 8383301
>emb|AL731592.2|OSJN00242 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B17, complete sequence Length = 99093 Score = 69.9 bits (35), Expect = 7e-09 Identities = 158/199 (79%) Strand = Plus / Minus Query: 233 catcagccgcggcgggtccagacgacgtggtcctgcggcaggaagtggcacaccggcgcg 292 |||||||| ||||||||||||||||| ||| || ||| ||||||||| |||||| | Sbjct: 96067 catcagccacggcgggtccagacgacaacgtcaggctgcacgaagtggcagaccggcacc 96008 Query: 293 ccgccgggcttcaccttgagcacctggaacgcgacgtgccccgggttccagccggccgtg 352 || ||||| || |||||||||||| || ||||| |||||||| | |||||| Sbjct: 96007 gtcccaggcttgacgccgagcacctggaaggcagcgtgctttgggttccactctgccgtg 95948 Query: 353 tcggcgtggcacaccgcgacggcctccaccgccgtgccgtccctgccgaccatggacacc 412 |||| |||||| || ||||| ||||||||||||| ||||| ||||||||| ||| || Sbjct: 95947 tcggtgtggcatacggcgaccgcctccaccgccgcaccgtctttgccgaccaacgacgcc 95888 Query: 413 gtgtacgccctggtcgcct 431 |||||||||| ||||||| Sbjct: 95887 ttgtacgccctcgtcgcct 95869
>ref|XM_474966.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 858 Score = 67.9 bits (34), Expect = 3e-08 Identities = 100/122 (81%) Strand = Plus / Minus Query: 310 gagcacctggaacgcgacgtgccccgggttccagccggccgtgtcggcgtggcacaccgc 369 |||||||||||| || ||||| |||||||| | |||||||||| |||||| || || Sbjct: 783 gagcacctggaaggcagcgtgctttgggttccactctgccgtgtcggtgtggcatacggc 724 Query: 370 gacggcctccaccgccgtgccgtccctgccgaccatggacaccgtgtacgccctggtcgc 429 ||| ||||||||||||| ||||| ||||||||| ||| || |||||||||| ||||| Sbjct: 723 gaccgcctccaccgccgcaccgtctttgccgaccaacgacgccttgtacgccctcgtcgc 664 Query: 430 ct 431 || Sbjct: 663 ct 662
>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0007B15 map S10318, complete sequence Length = 125243 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 310 gagcacctggaacgcgacgtgccccgggttccagccggccgtgtcggcgtggcacaccgc 369 |||||| ||||| || ||||| | ||||||||| | | |||||||| ||||||||| || Sbjct: 38624 gagcacatggaaggcagcgtgctctgggttccagtccgacgtgtcggtgtggcacacggc 38683 Query: 370 gacggcctccaccgc 384 ||| ||||||||||| Sbjct: 38684 gaccgcctccaccgc 38698
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 310 gagcacctggaacgcgacgtgccccgggttccagccggccgtgtcggcgtggcacaccgc 369 |||||| ||||| || ||||| | ||||||||| | | |||||||| ||||||||| || Sbjct: 3444669 gagcacatggaaggcagcgtgctctgggttccagtccgacgtgtcggtgtggcacacggc 3444728 Query: 370 gacggcctccaccgc 384 ||| ||||||||||| Sbjct: 3444729 gaccgcctccaccgc 3444743
>dbj|AK067523.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107B22, full insert sequence Length = 2088 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 310 gagcacctggaacgcgacgtgccccgggttccagccggccgtgtcggcgtggcacaccgc 369 |||||| ||||| || ||||| | ||||||||| | | |||||||| ||||||||| || Sbjct: 1735 gagcacatggaaggcagcgtgctctgggttccagtccgacgtgtcggtgtggcacacggc 1676 Query: 370 gacggcctccaccgc 384 ||| ||||||||||| Sbjct: 1675 gaccgcctccaccgc 1661
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 310 gagcacctggaacgcgacgtgccccgggttccagccggccgtgtcggcgtggcacaccgc 369 |||||| ||||| || ||||| | ||||||||| | | |||||||| ||||||||| || Sbjct: 3453373 gagcacatggaaggcagcgtgctctgggttccagtccgacgtgtcggtgtggcacacggc 3453432 Query: 370 gacggcctccaccgc 384 ||| ||||||||||| Sbjct: 3453433 gaccgcctccaccgc 3453447
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 318 ggaacgcgacgtgccccgggttccagccggccgtgtcggcgtggcacac 366 |||||||| |||| |||||| ||||| || |||||||||||||||||| Sbjct: 18403709 ggaacgcggcgtggtccgggtcccagcgggacgtgtcggcgtggcacac 18403661
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463G11 Length = 154188 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 318 ggaacgcgacgtgccccgggttccagccggccgtgtcggcgtggcacac 366 |||||||| |||| |||||| ||||| || |||||||||||||||||| Sbjct: 118445 ggaacgcggcgtggtccgggtcccagcgggacgtgtcggcgtggcacac 118397
>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463D04 Length = 145828 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 318 ggaacgcgacgtgccccgggttccagccggccgtgtcggcgtggcacac 366 |||||||| |||| |||||| ||||| || |||||||||||||||||| Sbjct: 65583 ggaacgcggcgtggtccgggtcccagcgggacgtgtcggcgtggcacac 65535
>gb|AF042275.1|AF042275 Oryza sativa anther-specific protein gene, complete cds Length = 2757 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 318 ggaacgcgacgtgccccgggttccagccggccgtgtcggcgtggcacac 366 |||||||| |||| |||||| ||||| || |||||||||||||||||| Sbjct: 2440 ggaacgcggcgtggtccgggtcccagcgggacgtgtcggcgtggcacac 2392
>ref|XM_483156.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1451 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Minus Query: 268 cggcaggaagtggcacaccggcgcgccgccgggctt 303 ||||| || |||||||||||||| |||||||||||| Sbjct: 1266 cggcatgaggtggcacaccggcgagccgccgggctt 1231
>ref|XM_476171.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 720 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Minus Query: 262 gtcctgcggcaggaagtggcacaccggc 289 |||||| ||||||||||||||||||||| Sbjct: 696 gtcctgtggcaggaagtggcacaccggc 669
>gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0067H15, complete sequence Length = 184316 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Plus Query: 262 gtcctgcggcaggaagtggcacaccggc 289 |||||| ||||||||||||||||||||| Sbjct: 176987 gtcctgtggcaggaagtggcacaccggc 177014
>gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1076_H08, complete sequence Length = 148348 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Plus Query: 262 gtcctgcggcaggaagtggcacaccggc 289 |||||| ||||||||||||||||||||| Sbjct: 6913 gtcctgtggcaggaagtggcacaccggc 6940 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 262 gtcctgcggcaggaagtggcacaccggc 289 |||||| |||| |||||||||||||||| Sbjct: 121050 gtcctgtggcaagaagtggcacaccggc 121023
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Minus Query: 268 cggcaggaagtggcacaccggcgcgccgccgggctt 303 ||||| || |||||||||||||| |||||||||||| Sbjct: 24527461 cggcatgaggtggcacaccggcgagccgccgggctt 24527426
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Plus Query: 262 gtcctgcggcaggaagtggcacaccggc 289 |||||| ||||||||||||||||||||| Sbjct: 7052064 gtcctgtggcaggaagtggcacaccggc 7052091 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 262 gtcctgcggcaggaagtggcacaccggc 289 |||||| |||| |||||||||||||||| Sbjct: 7166201 gtcctgtggcaagaagtggcacaccggc 7166174
>dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0026F07 Length = 137354 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Minus Query: 268 cggcaggaagtggcacaccggcgcgccgccgggctt 303 ||||| || |||||||||||||| |||||||||||| Sbjct: 35721 cggcatgaggtggcacaccggcgagccgccgggctt 35686
>emb|AJ575668.1|OSA575668 Oryza sativa (japonica cultivar-group) raftin1 gene, exons 1-3 Length = 1479 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Minus Query: 268 cggcaggaagtggcacaccggcgcgccgccgggctt 303 ||||| || |||||||||||||| |||||||||||| Sbjct: 1431 cggcatgaggtggcacaccggcgagccgccgggctt 1396
>emb|AJ575667.1|OSA575667 Oryza sativa (japonica cultivar-group) mRNA for RAFTIN1 protein Length = 1301 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Minus Query: 268 cggcaggaagtggcacaccggcgcgccgccgggctt 303 ||||| || |||||||||||||| |||||||||||| Sbjct: 1253 cggcatgaggtggcacaccggcgagccgccgggctt 1218
>dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1142B04 Length = 161964 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Minus Query: 268 cggcaggaagtggcacaccggcgcgccgccgggctt 303 ||||| || |||||||||||||| |||||||||||| Sbjct: 143177 cggcatgaggtggcacaccggcgagccgccgggctt 143142
>dbj|AK120942.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037I21, full insert sequence Length = 1450 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Minus Query: 268 cggcaggaagtggcacaccggcgcgccgccgggctt 303 ||||| || |||||||||||||| |||||||||||| Sbjct: 1265 cggcatgaggtggcacaccggcgagccgccgggctt 1230
>ref|NM_187695.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1572 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 372 cggcctccaccgccgtgccgtcc 394 ||||||||||||||||||||||| Sbjct: 1237 cggcctccaccgccgtgccgtcc 1215
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Plus Query: 372 cggcctccaccgccgtgccgtcc 394 ||||||||||||||||||||||| Sbjct: 6412446 cggcctccaccgccgtgccgtcc 6412468
>gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09, complete sequence Length = 146568 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Plus Query: 372 cggcctccaccgccgtgccgtcc 394 ||||||||||||||||||||||| Sbjct: 92572 cggcctccaccgccgtgccgtcc 92594
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Plus Query: 372 cggcctccaccgccgtgccgtcc 394 ||||||||||||||||||||||| Sbjct: 6411659 cggcctccaccgccgtgccgtcc 6411681
>dbj|AK109504.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-D01, full insert sequence Length = 2009 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 372 cggcctccaccgccgtgccgtcc 394 ||||||||||||||||||||||| Sbjct: 1297 cggcctccaccgccgtgccgtcc 1275
>dbj|AK105985.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G07, full insert sequence Length = 1672 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 372 cggcctccaccgccgtgccgtcc 394 ||||||||||||||||||||||| Sbjct: 1279 cggcctccaccgccgtgccgtcc 1257
>dbj|AK062585.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-E07, full insert sequence Length = 1710 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 372 cggcctccaccgccgtgccgtcc 394 ||||||||||||||||||||||| Sbjct: 1297 cggcctccaccgccgtgccgtcc 1275
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 282 acaccggcgcgccgccgggctt 303 |||||||||||||||||||||| Sbjct: 2059932 acaccggcgcgccgccgggctt 2059911
>gb|AC009108.10| Homo sapiens chromosome 16 clone RP11-463O9, complete sequence Length = 168656 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 375 cctccaccgccgtgccgtccctgccg 400 |||||||||| ||||||||||||||| Sbjct: 84914 cctccaccgcggtgccgtccctgccg 84939
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 282 acaccggcgcgccgccgggctt 303 |||||||||||||||||||||| Sbjct: 221473 acaccggcgcgccgccgggctt 221452
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 282 acaccggcgcgccgccgggctt 303 |||||||||||||||||||||| Sbjct: 2103471 acaccggcgcgccgccgggctt 2103492
>gb|AY111975.1| Zea mays CL56086_1 mRNA sequence Length = 517 Score = 44.1 bits (22), Expect = 0.38 Identities = 73/90 (81%) Strand = Plus / Plus Query: 277 gtggcacaccggcgcgccgccgggcttcaccttgagcacctggaacgcgacgtgccccgg 336 |||||| |||| |||||| ||||||||||| | ||||| | ||||||| || || || | Sbjct: 266 gtggcagaccgccgcgcctccgggcttcacgtcgagcagcctgaacgcggcgcgcacccg 325 Query: 337 gttccagccggccgtgtcggcgtggcacac 366 |||||| | || |||||||| | ||||||| Sbjct: 326 gttccaccgggacgtgtcggtgcggcacac 355
>ref|XM_476182.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 780 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 262 gtcctgcggcaggaagtggcacaccggc 289 |||||| |||| |||||||||||||||| Sbjct: 756 gtcctgtggcaagaagtggcacaccggc 729
>gb|AC137001.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0012L23, complete sequence Length = 121659 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 262 gtcctgcggcaggaagtggcacaccggc 289 |||||| |||| |||||||||||||||| Sbjct: 26215 gtcctgtggcaagaagtggcacaccggc 26188
>emb|AJ011500.1|SVI011500 Streptomyces violaceoruber Tu22 granaticin biosynthetic gene cluster Length = 39250 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 caccgtgtacgccctggtcg 428 |||||||||||||||||||| Sbjct: 34275 caccgtgtacgccctggtcg 34294
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 ccgcgacggcctccaccgcc 385 |||||||||||||||||||| Sbjct: 2611469 ccgcgacggcctccaccgcc 2611488
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 acgccctggtcgcctgcgtc 436 |||||||||||||||||||| Sbjct: 253988 acgccctggtcgcctgcgtc 254007
>gb|AF521085.1| Streptomyces nanchangensis NS3226 polyether ionophore nanchangmycin biosynthetic gene cluster, complete sequence Length = 132544 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 caccggcgcgccgccgggct 302 |||||||||||||||||||| Sbjct: 53172 caccggcgcgccgccgggct 53191 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 caccggcgcgccgccgggct 302 |||||||||||||||||||| Sbjct: 41331 caccggcgcgccgccgggct 41350
>emb|AJ578458.1|SGR578458 Streptomyces griseus subsp. griseus chromomycin A3 biosynthesis gene cluster, strain ATCC13273 Length = 42074 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 gcacaccggcgcgccgccgg 299 |||||||||||||||||||| Sbjct: 30211 gcacaccggcgcgccgccgg 30192
>gb|AC009368.8| Drosophila melanogaster 3L BAC RP98-4F7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 158816 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 gtcctgcggcaggaagtggc 281 |||||||||||||||||||| Sbjct: 110067 gtcctgcggcaggaagtggc 110086
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 cggcctccaccgccgtgccg 391 |||||||||||||||||||| Sbjct: 216331 cggcctccaccgccgtgccg 216350
>gb|AF307090.1| Thiobacillus denitrificans CbbR (cbbR) gene, complete cds and carboxysome operon, complete sequence Length = 6577 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 caccgccgtgccgtccctgc 398 |||||||||||||||||||| Sbjct: 1612 caccgccgtgccgtccctgc 1631
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 caccgccgtgccgtccctgc 398 |||||||||||||||||||| Sbjct: 2724273 caccgccgtgccgtccctgc 2724254
>emb|AJ575665.1|TAE575665 Triticum aestivum raftin1b gene, exons 1-3 Length = 1503 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 268 cggcaggaagtggcacaccggcgcgccgccgggctt 303 ||||| || |||||| ||||||| |||||||||||| Sbjct: 1293 cggcatgaggtggcagaccggcgtgccgccgggctt 1258
>emb|AJ575664.1|TAE575664 Triticum aestivum mRNA for RAFTIN1b protein Length = 1285 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 268 cggcaggaagtggcacaccggcgcgccgccgggctt 303 ||||| || |||||| ||||||| |||||||||||| Sbjct: 1065 cggcatgaggtggcagaccggcgtgccgccgggctt 1030
>gb|AC155646.4| Mus musculus 6 BAC RP24-195P20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 169883 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 gccgggcttcaccttgagcacctg 318 |||| ||||||||||||||||||| Sbjct: 75347 gccgagcttcaccttgagcacctg 75370
>dbj|AK109427.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-C03, full insert sequence Length = 1053 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 262 gtcctgcggcaggaagtggcacaccggc 289 |||||| |||| |||||||||||||||| Sbjct: 858 gtcctgtggcaagaagtggcacaccggc 831
>dbj|AK105947.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C07, full insert sequence Length = 1111 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 262 gtcctgcggcaggaagtggcacaccggc 289 |||||| |||| |||||||||||||||| Sbjct: 856 gtcctgtggcaagaagtggcacaccggc 829
>dbj|AK061473.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E12, full insert sequence Length = 1088 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 262 gtcctgcggcaggaagtggcacaccggc 289 |||||| |||| |||||||||||||||| Sbjct: 858 gtcctgtggcaagaagtggcacaccggc 831
>gb|AE003520.4| Drosophila melanogaster chromosome 3L, section 65 of 83 of the complete sequence Length = 275124 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 gtcctgcggcaggaagtggc 281 |||||||||||||||||||| Sbjct: 32835 gtcctgcggcaggaagtggc 32854 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,905,709 Number of Sequences: 3902068 Number of extensions: 2905709 Number of successful extensions: 50133 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49220 Number of HSP's gapped (non-prelim): 913 length of query: 442 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 420 effective length of database: 17,147,199,772 effective search space: 7201823904240 effective search space used: 7201823904240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
