ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet37b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC092473.4| Homo sapiens chromosome X clone RP11-126D17 map p... 38 0.67
2gb|AC148942.1| Pan troglodytes chromosome X clone RP43-025L12 ma... 38 0.67
3emb|AJ310906.1|GVE310906 Gracilaria verrucosa partial mRNA for A... 38 0.67
4gb|AC100789.2| Homo sapiens chromosome X, clone RP11-907I17, com... 38 0.67
5emb|AL589766.17| Mouse DNA sequence from clone RP23-19G4 on chro... 36 2.7
6gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 36 2.7

>gb|AC092473.4| Homo sapiens chromosome X clone RP11-126D17 map p11.4, complete
             sequence
          Length = 138039

 Score = 38.2 bits (19), Expect = 0.67
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 12    cttcccggaaagcccagca 30
             |||||||||||||||||||
Sbjct: 52672 cttcccggaaagcccagca 52690



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>gb|AC148942.1| Pan troglodytes chromosome X clone RP43-025L12 map human ortholog p11.4
             complete sequence
          Length = 141470

 Score = 38.2 bits (19), Expect = 0.67
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 12    cttcccggaaagcccagca 30
             |||||||||||||||||||
Sbjct: 78054 cttcccggaaagcccagca 78072



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>emb|AJ310906.1|GVE310906 Gracilaria verrucosa partial mRNA for ALA dehydratase (hemB gene)
          Length = 998

 Score = 38.2 bits (19), Expect = 0.67
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 2   tcaagagctccttcccgga 20
           |||||||||||||||||||
Sbjct: 207 tcaagagctccttcccgga 225



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>gb|AC100789.2| Homo sapiens chromosome X, clone RP11-907I17, complete sequence
          Length = 183453

 Score = 38.2 bits (19), Expect = 0.67
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 12     cttcccggaaagcccagca 30
              |||||||||||||||||||
Sbjct: 125116 cttcccggaaagcccagca 125134



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>emb|AL589766.17| Mouse DNA sequence from clone RP23-19G4 on chromosome 13 contains the Vmp
              gene for vesicular membrane protein P24, complete sequence
          Length = 176183

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 2      tcaagagctccttcccgg 19
              ||||||||||||||||||
Sbjct: 169990 tcaagagctccttcccgg 169973



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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 5       agagctccttcccggaaa 22
               ||||||||||||||||||
Sbjct: 1054104 agagctccttcccggaaa 1054087


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 213,464
Number of Sequences: 3902068
Number of extensions: 213464
Number of successful extensions: 40705
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40672
Number of HSP's gapped (non-prelim): 33
length of query: 32
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 12
effective length of database: 17,155,003,908
effective search space: 205860046896
effective search space used: 205860046896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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