ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet37b01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M98254.1|BLYPSAD Barley PSI-D subunit of photosystem I (PsaD) mRNA, complete cds Length = 810 Score = 771 bits (389), Expect = 0.0 Identities = 392/393 (99%) Strand = Plus / Minus Query: 23 aacctgatgcaaccattatcaccgaatccatcattcaaactcgacaattttaaaattaca 82 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 810 aacctgatgcaaccattatcaccgaatccatcattcaaactcgacaattttaaaattaca 751 Query: 83 ggacgtccatcatcatcgccacccgccaataactaccggtcgatgaactagcacgtacgc 142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 750 ggacgtccatcatcatcgccacccgccaataactaccggtcgatgaactagcacgtacgc 691 Query: 143 ataagcatgcacatatacgacgtacgagcgagattagatgtcgaaggagttcttgccggt 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 690 ataagcatgcacatatacgacgtacgagcgagattagatgtcgaaggagttcttgccggt 631 Query: 203 gaacttgacctcgatggggctgacgttcttgccgatgctgcggaagttctgtcccacgcc 262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 630 gaacttgacctcgatggggctgacgttcttgccgatgctgcggaagttctgtcccacgcc 571 Query: 263 ctgcctgccggcgttgaccttctccgggtagacgccgtccttggggtggaggtactgcac 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 570 ctgcctgccggcgttgaccttctccgggtagacgccgtccttggggtggaggtactgcac 511 Query: 323 ctcgccgttggggaagacgcggtagaactggtaggcgatcttgtacttggagcggaggcg 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 510 ctcgccgttggggaagacgcggtagaactggtaggcgatcttgtacttggagcggaggcg 451 Query: 383 gttgccgagggcgaggcactgttccttgcgggc 415 ||||||||||||||||||||| ||||||||||| Sbjct: 450 gttgccgagggcgaggcactgctccttgcgggc 418
>emb|AJ234406.1|HVU234406 Hordeum vulgare partial mRNA; clone cMWG0654 Length = 698 Score = 726 bits (366), Expect = 0.0 Identities = 409/421 (97%), Gaps = 6/421 (1%) Strand = Plus / Plus Query: 1 catcaaattaccatgtacatataacctgatgcaaccattatcaccgaatccatcattcaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29 catcaaattaccatgtacatataacctgatgcaaccattatcaccgaatccatcattcaa 88 Query: 61 actcgacaattttaaaattacaggacgtccatcatcatcgccacccgccaataactaccg 120 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 89 actcgacaattttaaaattacaggacgtccatcatcatcgccacccgccagtaactaccg 148 Query: 121 gtcgatgaactagcacgta----cgcat-aagcatgcacatatacgacgtacgagcgaga 175 |||||||||||||||| || | ||| ||||||||||||||||||||||||||||||| Sbjct: 149 gtcgatgaactagcacrtaacgccccattaagcatgcacatatacgacgtacgagcgaga 208 Query: 176 ttagatgtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgcc 235 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 209 ttagatgtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgcc 268 Query: 236 gatgctgcggaagttctgtcccacgccctgcctgccggcg-ttgaccttctccgggtaga 294 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 269 gatgctgcggaagttctgtcccacgccctgcctgccggcgtttgaccttctccgggtaga 328 Query: 295 cgccgtccttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggt 354 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 329 cgccgtccttggggtggaggtactgcacctcgtcgttggggtagacgcggtagaactggt 388 Query: 355 aggcgatcttgtacttggagcggaggcggttgccgagggcgaggcactgttccttgcggg 414 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 389 aggcgatcttgtacttggagcggaggcggttgccgagggcgaggcactgctccttgcggg 448 Query: 415 c 415 | Sbjct: 449 c 449
>gb|BC035756.1| Homo sapiens, clone IMAGE:5763894, mRNA Length = 864 Score = 470 bits (237), Expect = e-129 Identities = 256/262 (97%), Gaps = 4/262 (1%) Strand = Plus / Minus Query: 154 catatacgacgtacgagcgagattagatgtcgaaggagttcttgccggtgaacttgacct 213 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 658 catatacgacgta----cgagattagatgtcgaaggagttcttgccggtgaacttgacct 603 Query: 214 cgatggggctgacgttcttgccgatgctgcggaagttctgtcccacgccctgcctgccgg 273 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 602 cgatggggctgacgttcttgccgatgctgcggaagttctgccccacgccctgcctgccgg 543 Query: 274 cgttgaccttctccgggtagacgccgtccttggggtggaggtactgcacctcgccgttgg 333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 542 cgttgaccttctccgggtagacgccgtccttggggtggaggtactgcacctcgccgttgg 483 Query: 334 ggaagacgcggtagaactggtaggcgatcttgtacttggagcggaggcggttgccgaggg 393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 482 ggaagacgcggtagaactggtaggcgatcttgtacttggagcggaggcggttgccgaggg 423 Query: 394 cgaggcactgttccttgcgggc 415 |||||||||| ||||||||||| Sbjct: 422 cgaggcactgctccttgcgggc 401 Score = 216 bits (109), Expect = 4e-53 Identities = 141/149 (94%), Gaps = 7/149 (4%) Strand = Plus / Minus Query: 1 catcaaattaccatgtacatataacctgatgcaaccattatcaccga----atccatcat 56 ||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| Sbjct: 800 catcaaattaccatgtacatataacctgatgcatc-attatcaccgatcgaatccatcat 742 Query: 57 tcaaactcgacaattttaaaattacaggacgtccatcatcatcgccacccgccaataact 116 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 741 tcaaactcgacaatt--aaaattacaggacgtccatcatcatcgccacccgccaataact 684 Query: 117 accggtcgatgaactagcacgtacgcata 145 ||||||||||||||||||||||||||||| Sbjct: 683 accggtcgatgaactagcacgtacgcata 655
>ref|XM_483783.1| Oryza sativa (japonica cultivar-group), mRNA Length = 831 Score = 359 bits (181), Expect = 5e-96 Identities = 220/233 (94%) Strand = Plus / Minus Query: 177 tagatgtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 236 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 654 tagatgtcgaagacgttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 595 Query: 237 atgctgcggaagttctgtcccacgccctgcctgccggcgttgaccttctccgggtagacg 296 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 594 atgctgcggaagttctggccgacgccctgcctgccggcgttgaccttctccgggtagacg 535 Query: 297 ccgtccttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtag 356 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 534 ccgtccttggggtggaggtactgcacctcgccattggggaagacgcggtagaactggtag 475 Query: 357 gcgatcttgtacttggagcggaggcggttgccgagggcgaggcactgttcctt 409 ||||||||||||||||||||| | | |||| ||||| |||||||| ||||| Sbjct: 474 ttgatcttgtacttggagcggagcctggtgcccagggccaggcactgctcctt 422
>ref|XM_507339.1| PREDICTED Oryza sativa (japonica cultivar-group), P0604E01.24 mRNA Length = 855 Score = 359 bits (181), Expect = 5e-96 Identities = 220/233 (94%) Strand = Plus / Minus Query: 177 tagatgtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 236 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 678 tagatgtcgaagacgttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 619 Query: 237 atgctgcggaagttctgtcccacgccctgcctgccggcgttgaccttctccgggtagacg 296 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 618 atgctgcggaagttctggccgacgccctgcctgccggcgttgaccttctccgggtagacg 559 Query: 297 ccgtccttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtag 356 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 558 ccgtccttggggtggaggtactgcacctcgccattggggaagacgcggtagaactggtag 499 Query: 357 gcgatcttgtacttggagcggaggcggttgccgagggcgaggcactgttcctt 409 ||||||||||||||||||||| | | |||| ||||| |||||||| ||||| Sbjct: 498 ttgatcttgtacttggagcggagcctggtgcccagggccaggcactgctcctt 446
>gb|AY224449.1| Oryza sativa (japonica cultivar-group) isolate 23061 chloroplast photosystem I reaction center subunit II precursor-like protein mRNA, complete cds Length = 612 Score = 359 bits (181), Expect = 5e-96 Identities = 220/233 (94%) Strand = Plus / Minus Query: 177 tagatgtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 236 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 611 tagatgtcgaagacgttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 552 Query: 237 atgctgcggaagttctgtcccacgccctgcctgccggcgttgaccttctccgggtagacg 296 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 551 atgctgcggaagttctggccgacgccctgcctgccggcgttgaccttctccgggtagacg 492 Query: 297 ccgtccttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtag 356 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 491 ccgtccttggggtggaggtactgcacctcgccattggggaagacgcggtagaactggtag 432 Query: 357 gcgatcttgtacttggagcggaggcggttgccgagggcgaggcactgttcctt 409 ||||||||||||||||||||| | | |||| ||||| |||||||| ||||| Sbjct: 431 ttgatcttgtacttggagcggagcctggtgcccagggccaggcactgctcctt 379
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 359 bits (181), Expect = 5e-96 Identities = 220/233 (94%) Strand = Plus / Plus Query: 177 tagatgtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 236 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28076321 tagatgtcgaagacgttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 28076380 Query: 237 atgctgcggaagttctgtcccacgccctgcctgccggcgttgaccttctccgggtagacg 296 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 28076381 atgctgcggaagttctggccgacgccctgcctgccggcgttgaccttctccgggtagacg 28076440 Query: 297 ccgtccttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtag 356 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 28076441 ccgtccttggggtggaggtactgcacctcgccattggggaagacgcggtagaactggtag 28076500 Query: 357 gcgatcttgtacttggagcggaggcggttgccgagggcgaggcactgttcctt 409 ||||||||||||||||||||| | | |||| ||||| |||||||| ||||| Sbjct: 28076501 ttgatcttgtacttggagcggagcctggtgcccagggccaggcactgctcctt 28076553
>dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0562A06 Length = 154198 Score = 359 bits (181), Expect = 5e-96 Identities = 220/233 (94%) Strand = Plus / Plus Query: 177 tagatgtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 236 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 153813 tagatgtcgaagacgttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 153872 Query: 237 atgctgcggaagttctgtcccacgccctgcctgccggcgttgaccttctccgggtagacg 296 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 153873 atgctgcggaagttctggccgacgccctgcctgccggcgttgaccttctccgggtagacg 153932 Query: 297 ccgtccttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtag 356 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 153933 ccgtccttggggtggaggtactgcacctcgccattggggaagacgcggtagaactggtag 153992 Query: 357 gcgatcttgtacttggagcggaggcggttgccgagggcgaggcactgttcctt 409 ||||||||||||||||||||| | | |||| ||||| |||||||| ||||| Sbjct: 153993 ttgatcttgtacttggagcggagcctggtgcccagggccaggcactgctcctt 154045
>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0604E01 Length = 159049 Score = 359 bits (181), Expect = 5e-96 Identities = 220/233 (94%) Strand = Plus / Plus Query: 177 tagatgtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 236 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73816 tagatgtcgaagacgttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 73875 Query: 237 atgctgcggaagttctgtcccacgccctgcctgccggcgttgaccttctccgggtagacg 296 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 73876 atgctgcggaagttctggccgacgccctgcctgccggcgttgaccttctccgggtagacg 73935 Query: 297 ccgtccttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtag 356 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 73936 ccgtccttggggtggaggtactgcacctcgccattggggaagacgcggtagaactggtag 73995 Query: 357 gcgatcttgtacttggagcggaggcggttgccgagggcgaggcactgttcctt 409 ||||||||||||||||||||| | | |||| ||||| |||||||| ||||| Sbjct: 73996 ttgatcttgtacttggagcggagcctggtgcccagggccaggcactgctcctt 74048
>dbj|AK120372.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070L10, full insert sequence Length = 855 Score = 359 bits (181), Expect = 5e-96 Identities = 220/233 (94%) Strand = Plus / Minus Query: 177 tagatgtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 236 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 678 tagatgtcgaagacgttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 619 Query: 237 atgctgcggaagttctgtcccacgccctgcctgccggcgttgaccttctccgggtagacg 296 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 618 atgctgcggaagttctggccgacgccctgcctgccggcgttgaccttctccgggtagacg 559 Query: 297 ccgtccttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtag 356 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 558 ccgtccttggggtggaggtactgcacctcgccattggggaagacgcggtagaactggtag 499 Query: 357 gcgatcttgtacttggagcggaggcggttgccgagggcgaggcactgttcctt 409 ||||||||||||||||||||| | | |||| ||||| |||||||| ||||| Sbjct: 498 ttgatcttgtacttggagcggagcctggtgcccagggccaggcactgctcctt 446
>dbj|AK120366.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069H06, full insert sequence Length = 397 Score = 359 bits (181), Expect = 5e-96 Identities = 220/233 (94%) Strand = Plus / Minus Query: 177 tagatgtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 236 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 tagatgtcgaagacgttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 186 Query: 237 atgctgcggaagttctgtcccacgccctgcctgccggcgttgaccttctccgggtagacg 296 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 185 atgctgcggaagttctggccgacgccctgcctgccggcgttgaccttctccgggtagacg 126 Query: 297 ccgtccttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtag 356 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 125 ccgtccttggggtggaggtactgcacctcgccattggggaagacgcggtagaactggtag 66 Query: 357 gcgatcttgtacttggagcggaggcggttgccgagggcgaggcactgttcctt 409 ||||||||||||||||||||| | | |||| ||||| |||||||| ||||| Sbjct: 65 ttgatcttgtacttggagcggagcctggtgcccagggccaggcactgctcctt 13
>dbj|AK072473.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114B22, full insert sequence Length = 2756 Score = 359 bits (181), Expect = 5e-96 Identities = 220/233 (94%) Strand = Plus / Minus Query: 177 tagatgtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 236 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2579 tagatgtcgaagacgttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 2520 Query: 237 atgctgcggaagttctgtcccacgccctgcctgccggcgttgaccttctccgggtagacg 296 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 2519 atgctgcggaagttctggccgacgccctgcctgccggcgttgaccttctccgggtagacg 2460 Query: 297 ccgtccttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtag 356 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 2459 ccgtccttggggtggaggtactgcacctcgccattggggaagacgcggtagaactggtag 2400 Query: 357 gcgatcttgtacttggagcggaggcggttgccgagggcgaggcactgttcctt 409 ||||||||||||||||||||| | | |||| ||||| |||||||| ||||| Sbjct: 2399 ttgatcttgtacttggagcggagcctggtgcccagggccaggcactgctcctt 2347
>dbj|AK061775.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-D04, full insert sequence Length = 831 Score = 359 bits (181), Expect = 5e-96 Identities = 220/233 (94%) Strand = Plus / Minus Query: 177 tagatgtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 236 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 654 tagatgtcgaagacgttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 595 Query: 237 atgctgcggaagttctgtcccacgccctgcctgccggcgttgaccttctccgggtagacg 296 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 594 atgctgcggaagttctggccgacgccctgcctgccggcgttgaccttctccgggtagacg 535 Query: 297 ccgtccttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtag 356 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 534 ccgtccttggggtggaggtactgcacctcgccattggggaagacgcggtagaactggtag 475 Query: 357 gcgatcttgtacttggagcggaggcggttgccgagggcgaggcactgttcctt 409 ||||||||||||||||||||| | | |||| ||||| |||||||| ||||| Sbjct: 474 ttgatcttgtacttggagcggagcctggtgcccagggccaggcactgctcctt 422
>gb|AF147726.1|AF147726 Zea mays ferredoxin-binding subunit (psi-d1) mRNA, complete cds Length = 646 Score = 339 bits (171), Expect = 4e-90 Identities = 216/231 (93%) Strand = Plus / Minus Query: 182 gtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgccgatgct 241 |||||||| | ||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 384 gtcgaaggtgctcttgccggtgaacttgacgtcgatggggttgacgttcttgccgatgct 325 Query: 242 gcggaagttctgtcccacgccctgcctgccggcgttgaccttctccgggtagacgccgtc 301 |||||||||||| || ||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 324 gcggaagttctggccgacgccctccctgccggggttgaccttctccgggtagacgccgtc 265 Query: 302 cttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtaggcgat 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 264 cttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtaggtgat 205 Query: 362 cttgtacttggagcggaggcggttgccgagggcgaggcactgttccttgcg 412 ||||||||||||||| || | | ||||||| ||||||||||| |||||||| Sbjct: 204 cttgtacttggagcgcagcctggtgccgagcgcgaggcactgctccttgcg 154
>gb|AF335592.1| Chlamydomonas reinhardtii photosystem I subunit (PsaD) gene, complete cds; nuclear gene for chloroplast product Length = 2046 Score = 101 bits (51), Expect = 2e-18 Identities = 123/147 (83%) Strand = Plus / Minus Query: 203 gaacttgacctcgatggggctgacgttcttgccgatgctgcggaagttctgtcccacgcc 262 ||||||||||| ||||||| ||||||||| |||||||| ||| | |||||| | |||| Sbjct: 1381 gaacttgaccttgatggggttgacgttctggccgatgcggcgcatgttctggttcgcgcc 1322 Query: 263 ctgcctgccggcgttgaccttctccgggtagacgccgtccttggggtggaggtactgcac 322 | | ||| ||||| |||||||| |||||||||||||| ||||| ||||||||||| Sbjct: 1321 cacgcggccagcgttcaccttctcggggtagacgccgtcagcagggtgcaggtactgcac 1262 Query: 323 ctcgccgttggggaagacgcggtagaa 349 || ||||| |||||||||||||||||| Sbjct: 1261 cttgccgtcggggaagacgcggtagaa 1235
>emb|X79674.1|CRPSAD C.reinhardtii PsaD mRNA Length = 991 Score = 101 bits (51), Expect = 2e-18 Identities = 123/147 (83%) Strand = Plus / Minus Query: 203 gaacttgacctcgatggggctgacgttcttgccgatgctgcggaagttctgtcccacgcc 262 ||||||||||| ||||||| ||||||||| |||||||| ||| | |||||| | |||| Sbjct: 576 gaacttgaccttgatggggttgacgttctggccgatgcggcgcatgttctggttcgcgcc 517 Query: 263 ctgcctgccggcgttgaccttctccgggtagacgccgtccttggggtggaggtactgcac 322 | | ||| ||||| |||||||| |||||||||||||| ||||| ||||||||||| Sbjct: 516 cacgcggccagcgttcaccttctcggggtagacgccgtcagcagggtgcaggtactgcac 457 Query: 323 ctcgccgttggggaagacgcggtagaa 349 || ||||| |||||||||||||||||| Sbjct: 456 cttgccgtcggggaagacgcggtagaa 430
>emb|X74419.1|CRPSADA C.reinhardtii psaD mRNA for PSI reaction center, subunit II Length = 978 Score = 101 bits (51), Expect = 2e-18 Identities = 123/147 (83%) Strand = Plus / Minus Query: 203 gaacttgacctcgatggggctgacgttcttgccgatgctgcggaagttctgtcccacgcc 262 ||||||||||| ||||||| ||||||||| |||||||| ||| | |||||| | |||| Sbjct: 570 gaacttgaccttgatggggttgacgttctggccgatgcggcgcatgttctggttcgcgcc 511 Query: 263 ctgcctgccggcgttgaccttctccgggtagacgccgtccttggggtggaggtactgcac 322 | | ||| ||||| |||||||| |||||||||||||| ||||| ||||||||||| Sbjct: 510 cacgcggccagcgttcaccttctcggggtagacgccgtcagcagggtgcaggtactgcac 451 Query: 323 ctcgccgttggggaagacgcggtagaa 349 || ||||| |||||||||||||||||| Sbjct: 450 cttgccgtcggggaagacgcggtagaa 424
>gb|U91996.1|PAU91996 Picea abies subunit II of photosystem I (PSAD) gene, nuclear gene encoding chloroplast protein, partial cds Length = 400 Score = 93.7 bits (47), Expect = 4e-16 Identities = 92/107 (85%) Strand = Plus / Minus Query: 270 ccggcgttgaccttctccgggtagacgccgtccttggggtggaggtactgcacctcgccg 329 |||| ||| |||||||||||||||||||||||||| ||||| |||||||| || || ||| Sbjct: 182 ccggggttcaccttctccgggtagacgccgtccttagggtgcaggtactgaacttctccg 123 Query: 330 ttggggaagacgcggtagaactggtaggcgatcttgtacttggagcg 376 || || || ||||||||||||||||| |||||||| |||||||| Sbjct: 122 tttggaaaaacgcggtagaactggtattttatcttgtatttggagcg 76
>emb|AJ132477.1|CPA132477 Cyanophora paradoxa mRNA for photosystem I reaction centre subunit II precursor Length = 958 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 269 gccggcgttgaccttctccgggtagacgccgtccttggggtggaggtactgcacctcgcc 328 ||||| |||||||||||||||| ||||||| ||||||||||||||| |||| |||||||| Sbjct: 563 gccggggttgaccttctccgggaagacgccatccttggggtggaggaactgaacctcgcc 504 Query: 329 gttggggaagacgcggtaga 348 | |||| | |||||||||| Sbjct: 503 ggaggggtaaacgcggtaga 484
>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7 Length = 349122 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 387 ccgagggcgaggcactgttccttgcgggc 415 |||||||| |||||||||||||||||||| Sbjct: 199517 ccgagggcaaggcactgttccttgcgggc 199489
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 48.1 bits (24), Expect = 0.023 Identities = 27/28 (96%) Strand = Plus / Plus Query: 385 tgccgagggcgaggcactgttccttgcg 412 |||||||||||||||||||||| ||||| Sbjct: 401330 tgccgagggcgaggcactgttctttgcg 401357
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 211 cctcgatggggctgacgttcttgccgatgctgc 243 ||||||||| |||| ||||| |||||||||||| Sbjct: 7769276 cctcgatggtgctgccgttcctgccgatgctgc 7769308
>gb|AY857266.1| Hypocrea lixii strain TUB F-452 translation elongation factor 1 alpha (tef1) gene, partial sequence Length = 921 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 186 aaggagttcttgccggtgaacttg 209 |||||| ||||||||||||||||| Sbjct: 852 aaggaggtcttgccggtgaacttg 829
>ref|NM_054077.2| Mus musculus proline arginine-rich end leucine-rich repeat (Prelp), mRNA Length = 3606 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 agatgtcgaaggagttcttg 197 |||||||||||||||||||| Sbjct: 1000 agatgtcgaaggagttcttg 981
>gb|AY286122.1| Cyanidioschyzon merolae DBV201 chromosome 1, complete sequence Length = 422021 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 gacgcggtagaactggtaggcgat 361 |||||||||| ||||||||||||| Sbjct: 104556 gacgcggtaggactggtaggcgat 104579
>gb|AC126792.15| Medicago truncatula clone mth2-8o8, complete sequence Length = 105297 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 aaactcgacaattttaaaattaca 82 |||||||||| ||||||||||||| Sbjct: 3778 aaactcgacacttttaaaattaca 3801
>emb|X57310.1|NLPCBABC Nocardia lactamdurans pcbAB and pcbC genes for alpha-aminoadipyl-L-cysteinyl-D-valine synthetase and isopenicillin N synthase Length = 12004 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 311 gaggtactgcacctcgccgttggg 334 |||||||| ||||||||||||||| Sbjct: 5308 gaggtactccacctcgccgttggg 5285
>emb|X96862.1|HVGEODBIP H.virescens mRNA for general odorant binding protein 1 Length = 876 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gcacctcgccgttggggaag 338 |||||||||||||||||||| Sbjct: 316 gcacctcgccgttggggaag 297
>emb|AL662779.10| Mouse DNA sequence from clone RP23-177A4 on chromosome 11 Contains the Kif2b gene for kinesin family member 28, complete sequence Length = 231926 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 aaccattatcaccgaatccatcat 56 |||||||||||| ||||||||||| Sbjct: 212482 aaccattatcacagaatccatcat 212459
>gb|AC119073.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0082N20 BAC genomic sequence, complete sequence Length = 138826 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 ggcgttgaccttctccgggt 291 |||||||||||||||||||| Sbjct: 128936 ggcgttgaccttctccgggt 128955
>gb|AC119071.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0044D15 BAC genomic sequence, complete sequence Length = 144544 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 ggcgttgaccttctccgggt 291 |||||||||||||||||||| Sbjct: 574 ggcgttgaccttctccgggt 593
>gb|AC008371.4| Drosophila melanogaster, chromosome 2L, region 21D-21D, BAC clone BACR22C14, complete sequence Length = 163461 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 actcgacaattttaaaatta 80 |||||||||||||||||||| Sbjct: 30785 actcgacaattttaaaatta 30766
>dbj|AK037150.1| Mus musculus 6 days neonate skin cDNA, RIKEN full-length enriched library, clone:A030001H09 product:proline arginine-rich end leucine-rich repeat, full insert sequence Length = 3606 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 agatgtcgaaggagttcttg 197 |||||||||||||||||||| Sbjct: 1000 agatgtcgaaggagttcttg 981
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 ggcgttgaccttctccgggt 291 |||||||||||||||||||| Sbjct: 6669726 ggcgttgaccttctccgggt 6669745
>gb|AC079877.5| Homo sapiens BAC clone RP11-115M4 from 2, complete sequence Length = 85297 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 tcaccgaatccatcattcaa 60 |||||||||||||||||||| Sbjct: 75578 tcaccgaatccatcattcaa 75597
>gb|AF543112.1| Drosophila leonis strain 6 xanthine dehydrogenase (Xdh) gene, partial cds Length = 1566 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 318 tgcacctcgccgttggggaagacg 341 |||||||||||||||| ||||||| Sbjct: 1352 tgcacctcgccgttggcgaagacg 1329
>gb|AF543111.1| Drosophila leonis strain 3 xanthine dehydrogenase (Xdh) gene, partial cds Length = 1564 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 318 tgcacctcgccgttggggaagacg 341 |||||||||||||||| ||||||| Sbjct: 1352 tgcacctcgccgttggcgaagacg 1329
>gb|AE003590.3| Drosophila melanogaster chromosome 2L, section 1 of 83 of the complete sequence Length = 305900 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 actcgacaattttaaaatta 80 |||||||||||||||||||| Sbjct: 206763 actcgacaattttaaaatta 206744
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 ggcgttgaccttctccgggt 291 |||||||||||||||||||| Sbjct: 6736193 ggcgttgaccttctccgggt 6736212
>gb|AC005334.1|AC005334 Drosophila melanogaster DNA sequence (P1s DS08221 (D130) and DS00738 (D271)), complete sequence Length = 111448 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 actcgacaattttaaaatta 80 |||||||||||||||||||| Sbjct: 25553 actcgacaattttaaaatta 25572 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,817,519 Number of Sequences: 3902068 Number of extensions: 2817519 Number of successful extensions: 49494 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49335 Number of HSP's gapped (non-prelim): 153 length of query: 415 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 393 effective length of database: 17,147,199,772 effective search space: 6738849510396 effective search space used: 6738849510396 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
