>SUBL_ARATH (O65351) Subtilisin-like protease precursor (EC 3.4.21.-)|
           (Cucumisin-like serine protease)
          Length = 757

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
 Frame = -3

Query: 418 TNVGAAGSVYAAKVTGPPS-IVVSVKPARLAFKKAGDKLGYTVAFKSTAQGGPTDAAFGW 242
           T+VG AG+ Y+ KVT   + + +SV+PA L FK+A +K  YTV F   +       +FG 
Sbjct: 680 TSVGGAGT-YSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKPSGSNSFGS 738

Query: 241 LTWSSGEQDVRSPISYTW 188
           + WS G+  V SP++ +W
Sbjct: 739 IEWSDGKHVVGSPVAISW 756

>XSP1_ARATH (Q9LLL8) Xylem serine proteinase 1 precursor (EC 3.4.21.-) (AtXSP1)|
           (Cucumisin-like protein)
          Length = 749

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 30/73 (41%), Positives = 37/73 (50%)
 Frame = -3

Query: 418 TNVGAAGSVYAAKVTGPPSIVVSVKPARLAFKKAGDKLGYTVAFKSTAQGGPTDAAFGWL 239
           TNVG   SVY A V  P  + ++V+P  L+F KA  K  + V  K+  Q  P     G L
Sbjct: 670 TNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKA-KQMTPGKIVSGLL 728

Query: 238 TWSSGEQDVRSPI 200
            W S    VRSPI
Sbjct: 729 VWKSPRHSVRSPI 741

>CUCM1_CUCME (Q39547) Cucumisin precursor (EC 3.4.21.25) (Allergen Cuc m 1)|
          Length = 731

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 26/76 (34%), Positives = 40/76 (52%)
 Frame = -3

Query: 418 TNVGAAGSVYAAKVTGPPSIVVSVKPARLAFKKAGDKLGYTVAFKSTAQGGPTDAAFGWL 239
           T+V    S Y A ++ P  + +SV P  L+F   GD+  +T+  + + +G    A+   L
Sbjct: 656 TSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSIKGFVVSAS---L 712

Query: 238 TWSSGEQDVRSPISYT 191
            WS G   VRSPI+ T
Sbjct: 713 VWSDGVHYVRSPITIT 728

>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)|
          Length = 644

 Score = 34.7 bits (78), Expect = 0.094
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +3

Query: 246 PNAASVGPPCAVDLNATVYPSLSPAFLNASLAGFTDTTMLGGPVTLAAYTDPAAPT 413
           PN++    P +  ++ +++PS + +F + S +  T TT L  P T AA     +PT
Sbjct: 142 PNSSIQSAPSSASVSPSIFPSPAQSFASISASPSTPTTTLAPPTTAAAGALAGSPT 197

>PEP_DROME (P41073) Zinc finger protein on ecdysone puffs|
          Length = 716

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 323 EGRGQARVHRRVQVDGAGRPDGRRVRMADVEQRGAGRAEPD 201
           EG G       V+ DGAG+ +G     A  E+   G  EP+
Sbjct: 597 EGEGDEEAEAEVEEDGAGQDNGEEEMEAQEEEGQEGEQEPE 637

>RL13_DROME (P41126) 60S ribosomal protein L13 (BBC1 protein homolog)|
          Length = 218

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +1

Query: 124 TSMDLPRRSLRRHGQRTNLTSPTYT--ISGSARPAPRCSTSAIRTRRPSG 267
           T  + P R +RRH  R       +    SG+ RP  RC T    T+  +G
Sbjct: 23  TWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIRYHTKLRAG 72

>HOXX_BRAJA (P31907) Hydrogenase maturation factor hoxX|
          Length = 566

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -2

Query: 221 AGRAEPDIVYVGDVRL-VRWPCRRSDR 144
           AG+A P  +  GD R+ VR PCR++DR
Sbjct: 151 AGQAAPQPMQAGDPRIRVRGPCRQADR 177

>COBQ_BRAJA (Q89Q71) Cobyric acid synthase|
          Length = 482

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 290 VQVDGAGRPDGRRVRMADVEQRG-AGRAEPDIVYVGDV 180
           V V+GAG P    +R AD+   G A +A+  +V +GD+
Sbjct: 129 VLVEGAGSPAEVNLRKADIANMGFARKADVPVVLIGDI 166

>T2_MOUSE (Q06666) Octapeptide-repeat protein T2|
          Length = 185

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = -2

Query: 374 RPAQHRRVREAGKARVQEGRGQARVHRRVQVDGAGRPDGRRVRMADVEQRGAGRAE 207
           R A+ +R REA K R +  RG     R V+ +  GR  G R + A+  ++G G+ +
Sbjct: 133 REAERQRGREAEKQRGERQRG-----REVEAEAEGRGRGMR-QEAEATEQGQGQRQ 182

>COBQ_RHOCA (Q52686) Cobyric acid synthase|
          Length = 483

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 299 HRRVQVDGAGRPDGRRVRMADVEQRGAGR-AEPDIVYVGDV 180
           H  V V+GAG P    +R  D+   G  R A+  +V VGD+
Sbjct: 125 HDLVIVEGAGSPAEVNLRAGDIANMGFARAADVPVVLVGDI 165

>NTF2_CANAL (Q9P926) Nuclear transport factor 2 (NTF-2)|
          Length = 124

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
 Frame = +2

Query: 47  LYSNNLLISFLTAQKSGAR-ILPAYATLPW------ISPADHSAGTANAPIL 181
           LY N  +++F T+Q  GAR I+   A+LP+      IS  D    +AN  IL
Sbjct: 30  LYRNESMLTFETSQLQGARDIVEKLASLPFQKVAHRISTLDAQPASANGDIL 81

>Y1435_DEIRA (Q9RUF1) Hypothetical UPF0052 protein DR1435|
          Length = 467

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -2

Query: 284 VDGAGRPDGRRVRMADVEQRGAGRAEPDIVYVGDVRLVRWPCRRSDRRGR 135
           +DGAGR    RVR A + Q G  R +P  +    ++L   P RR    G+
Sbjct: 416 LDGAGRDLRGRVRFAPLIQAGTARHDPQKLAAALMQLWDGPPRRFSLPGQ 465

>YTZ4_AGRVI (P70796) Hypothetical 31.6 kDa protein in TAR-I ttuC' 3'region|
           (ORFZ4)
          Length = 280

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
 Frame = -2

Query: 365 QHRRVREAGKARVQ----EGRGQARVHRRVQVDGAG---------RPDGRRVRMADVEQR 225
           +HR  R +G  + Q     G  +A   RR ++ G+          R  GRR     V+Q 
Sbjct: 150 RHRGERRSGNCQQQGRHATGEERAECGRRQRLSGSALAGHLVAIDRRHGRRTLSWQVDQN 209

Query: 224 GAGRAEPDIVYVGDVRLVRWPCRRSDRR 141
           G GRA      +G +   R   +R DRR
Sbjct: 210 GRGRA----AILGTIIDARQHDQRGDRR 233

>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-2)
          Length = 1558

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +2

Query: 86  QKSGARILPAYATLPWISPADHSAGTANAPILHPPRIRYRAPHVLLPAAPRQPS 247
           Q S A   P   T   ++PA H+     AP LHPPR+   +PH  L      PS
Sbjct: 776 QGSPATSQPPNQTQSTVAPAAHTH-IQQAPTLHPPRL--PSPHPPLQPMTAPPS 826

>VIV1_MAIZE (P26307) Regulatory protein viviparous-1|
          Length = 691

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 286 KSTAQGGPTDAAFGWLTWS-SGEQDVRSPIS 197
           +ST  G  T +A GW  WS S +Q V++P+S
Sbjct: 430 RSTHSGPVTPSAGGWGFWSPSSQQQVQNPLS 460

>TIM44_MOUSE (O35857) Import inner membrane translocase subunit TIM44,|
           mitochondrial precursor
          Length = 452

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 352 SVKPARLAFKKAGDKLGYTVAFKSTAQG 269
           + K +  +  K+G+KLG T AFK+ +QG
Sbjct: 155 TAKQSAESVSKSGEKLGKTAAFKAISQG 182

>ALX3_HUMAN (O95076) Homeobox protein aristaless-like 3 (Proline-rich|
           transcription factor ALX3)
          Length = 343

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = +3

Query: 195 YDIGL--RTSCSPLLHVS---HPNAASVGPPCAVDLNATVYPSLSP-AFLNASLAGFTDT 356
           YDI +  RT   P L  S    P + S G PC V       P +SP +  + S+AGF   
Sbjct: 228 YDISVLPRTDSHPQLQNSLWAGPGSGSPGGPCLVSPEGIPSPCMSPYSHPHGSVAGF--- 284

Query: 357 TMLGGPVTLAAY 392
             +G P   AA+
Sbjct: 285 --MGVPAPSAAH 294

>SL9A5_RAT (Q9Z0X2) Sodium/hydrogen exchanger 5 (Na(+)/H(+) exchanger 5)|
           (NHE-5) (Solute carrier family 9 member 5)
          Length = 898

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = +2

Query: 101 RILPAYATLPWISPADHSAGTANAPILHPPRIRYRAPHVLLPAAPRQP 244
           +I+P      W          A+ P   PP +    PH L+P  P+ P
Sbjct: 783 KIVPVDMQTGWNQSISSLESLASPPCTQPPTLTRLPPHPLVPEEPQVP 830

>DNAJ_GLUOX (Q5FSL4) Chaperone protein dnaJ|
          Length = 380

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 344 AGKARVQEGRGQARVHRRVQVD-GAGRPDGRRVRMADVEQRGAGRAEPDIVYV 189
           A   +V  G G       + +D  AG  DG R+RMA   + G    +P  +YV
Sbjct: 200 ANPCKVCHGTGTEAKTETISIDIPAGVEDGTRIRMAGKGEAGGEGVQPGDLYV 252

>VL2_HPV42 (P27235) Minor capsid protein L2|
          Length = 477

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 13/72 (18%)
 Frame = +3

Query: 237 VSHPNAASVGPPCAVDLNATVYPSLSPAFLNASL-------------AGFTDTTMLGGPV 377
           ++ P  A V PP AVD      PS+      +S+              GF  TT  GGP 
Sbjct: 81  IAEPGPA-VRPPIAVDTVGPSDPSIVSLLEESSVIDAGITVPDITSHGGFNITTSTGGPA 139

Query: 378 TLAAYTDPAAPT 413
           +  A  D + PT
Sbjct: 140 STPAILDISPPT 151

>PER1_RAT (Q8CHI5) Period circadian protein 1 (rPER1) (Fragment)|
          Length = 1244

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 98   ARILPAYATLPWISPADHSAGTANAPILHPPRIRYRAPHVLLPAAPRQP 244
            A +LP Y    + SP  +  G + AP+  PP     +P   LP  P  P
Sbjct: 916  ALVLPNYL---FPSPTSYPYGVSQAPVEGPPTPASHSPSPSLPPPPPSP 961


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,274,038
Number of Sequences: 219361
Number of extensions: 1237494
Number of successful extensions: 4092
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4089
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)