| Clone Name | rbaet35h02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC091463.9| Mus musculus chromosome 16, clone RP23-301D7, complete sequence Length = 232419 Score = 42.1 bits (21), Expect = 0.92 Identities = 24/25 (96%) Strand = Plus / Minus Query: 26 cttctacgagaaaacacaccgaagt 50 |||||| |||||||||||||||||| Sbjct: 58233 cttctatgagaaaacacaccgaagt 58209
>gb|AC133648.3| Mus musculus BAC clone RP23-291B1 from chromosome 7, complete sequence Length = 207234 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 249 ggtgggggtgggagggacggg 269 ||||||||||||||||||||| Sbjct: 65504 ggtgggggtgggagggacggg 65524
>emb|AL137019.6| Human DNA sequence from clone RP11-143P10 on chromosome 9q31.3-33.1, complete sequence Length = 181542 Score = 42.1 bits (21), Expect = 0.92 Identities = 24/25 (96%) Strand = Plus / Plus Query: 249 ggtgggggtgggagggacggggtgg 273 ||||||||||||||||| ||||||| Sbjct: 76273 ggtgggggtgggagggagggggtgg 76297
>gb|AC118472.8| Mus musculus chromosome 19, clone RP23-187N14, complete sequence Length = 222869 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 tgggggtgggagggacgggg 270 |||||||||||||||||||| Sbjct: 25895 tgggggtgggagggacgggg 25914
>ref|XM_715464.1| Candida albicans SC5314 putative phospholipase/carboxylesterase (CaO19_4248), mRNA Length = 906 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 52 acaaaatcttgataaagcaacaca 75 |||||||| ||||||||||||||| Sbjct: 654 acaaaatcctgataaagcaacaca 631
>gb|AC147788.1| Latimeria menadoensis clone VMRC4-19C10, complete sequence Length = 168364 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 71 acacaccaaccacacccccacact 94 ||||| |||||||||||||||||| Sbjct: 83426 acacaacaaccacacccccacact 83403
>gb|AC141890.3| Mus musculus BAC clone RP23-410K18 from chromosome 7, complete sequence Length = 169771 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 tattttgattcataaataca 24 |||||||||||||||||||| Sbjct: 7038 tattttgattcataaataca 7019
>gb|AC125807.9| Homo sapiens 12 BAC RP11-253E3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 131995 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 86 ccccacactcagcctgacacacac 109 ||||||||||||||| |||||||| Sbjct: 13539 ccccacactcagcctcacacacac 13516
>gb|AC158144.13| Mus musculus chromosome 7, clone RP23-82N3, complete sequence Length = 213341 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 tattttgattcataaataca 24 |||||||||||||||||||| Sbjct: 180050 tattttgattcataaataca 180031
>emb|AL645966.30| Mouse DNA sequence from clone DN-144H19 on chromosome 3 Contains the 3' end of the Il21 gene for interleukin 21, a novel pseudogene (D530049N12RIK), a novel gene (C030047M16RIK), the Il2 gene for interleukin 2, the Tenr gene for testis nuclear RNA binding protein, a NADH dehydrogenase subunit 5 (ND5) pseudogene and a putative S1 RNA binding domain protein (PS1D) (2810055E05RIK) pseudogene, complete sequence Length = 161393 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 cacaccaaccacacccccacactc 95 |||||| ||||||||||||||||| Sbjct: 140420 cacacccaccacacccccacactc 140397
>gb|AC097063.2| Homo sapiens chromosome 1 clone RP11-430H12, complete sequence Length = 183086 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 tgggggtgggagggacgggg 270 |||||||||||||||||||| Sbjct: 12482 tgggggtgggagggacgggg 12501
>gb|AC119800.2| Homo sapiens chromosome 1 clone RP4-630A11, complete sequence Length = 161112 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 tgggggtgggagggacgggg 270 |||||||||||||||||||| Sbjct: 123468 tgggggtgggagggacgggg 123487
>gb|AC006975.2|AC006975 Homo sapiens PAC clone RP5-1026B21 from X, complete sequence Length = 146410 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 caaccacacccccacactca 96 |||||||||||||||||||| Sbjct: 40462 caaccacacccccacactca 40481
>emb|AL163302.2|HS21C102 Homo sapiens chromosome 21 segment HS21C102 Length = 340000 Score = 40.1 bits (20), Expect = 3.6 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 68 gcaacacaccaa-ccacacccccacact 94 |||||||||||| ||||||||||||||| Sbjct: 199260 gcaacacaccaaaccacacccccacact 199233
>gb|AC131231.10| Mus musculus chromosome 19, clone RP24-395L19, complete sequence Length = 181700 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 tgggggtgggagggacgggg 270 |||||||||||||||||||| Sbjct: 175068 tgggggtgggagggacgggg 175087
>emb|BX322561.1|HSE12310 Homo sapiens chromosome 21 from PAC RPCI-1 RP1-310E12 map 21q22.3 region D21S171-LA161, complete sequence Length = 131563 Score = 40.1 bits (20), Expect = 3.6 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 68 gcaacacaccaa-ccacacccccacact 94 |||||||||||| ||||||||||||||| Sbjct: 59572 gcaacacaccaaaccacacccccacact 59545
>emb|AL662823.12| Mouse DNA sequence from clone RP23-243E17 on chromosome 3, complete sequence Length = 215241 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 cacaccaaccacacccccacactc 95 |||||| ||||||||||||||||| Sbjct: 171074 cacacccaccacacccccacactc 171051
>emb|AL645807.4| Mouse DNA sequence from clone CT7-337H6 on chromosome 3, complete sequence Length = 201500 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 cacaccaaccacacccccacactc 95 |||||| ||||||||||||||||| Sbjct: 99543 cacacccaccacacccccacactc 99520
>gb|AC170864.2| Mus musculus BAC clone RP24-576D1 from chromosome 7, complete sequence Length = 208952 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 aaagcaacacaccaaccaca 84 |||||||||||||||||||| Sbjct: 109202 aaagcaacacaccaaccaca 109183 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,220,657 Number of Sequences: 3902068 Number of extensions: 2220657 Number of successful extensions: 56985 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 56948 Number of HSP's gapped (non-prelim): 69 length of query: 279 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 257 effective length of database: 17,147,199,772 effective search space: 4406830341404 effective search space used: 4406830341404 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)