| Clone Name | rbaet35g03 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (XEA) Length = 1174 Score = 117 bits (59), Expect = 3e-24 Identities = 62/63 (98%) Strand = Plus / Minus Query: 1 gaagaatctaccacccgctccattttacattatcccccctcactggtccttatttatcat 60 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 1094 gaagaatctaccacccgctccatttcacattatcccccctcactggtccttatttatcat 1035 Query: 61 aca 63 ||| Sbjct: 1034 aca 1032
>emb|AL590111.14| Human DNA sequence from clone RP11-570F3 on chromosome 10 Contains part of a novel gene (FLJ30499) and the 3' end of a novel gene (FLJ30450), complete sequence Length = 41069 Score = 40.1 bits (20), Expect = 0.59 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 ctcactggtccttatttatc 58 |||||||||||||||||||| Sbjct: 3262 ctcactggtccttatttatc 3243
>gb|BC090193.1| Xenopus laevis cDNA clone MGC:85054 IMAGE:6327047, complete cds Length = 1785 Score = 40.1 bits (20), Expect = 0.59 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 tggtccttatttatcataca 63 |||||||||||||||||||| Sbjct: 1462 tggtccttatttatcataca 1443
>emb|AL009147.1|DMC171D11 Drosophila melanogaster cosmid clone 171D11 Length = 35000 Score = 38.2 bits (19), Expect = 2.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 atctaccacccgctccatt 24 ||||||||||||||||||| Sbjct: 4764 atctaccacccgctccatt 4746
>gb|AC105774.8| Drosophila melanogaster X BAC RP98-8O5 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170186 Score = 38.2 bits (19), Expect = 2.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 atctaccacccgctccatt 24 ||||||||||||||||||| Sbjct: 80976 atctaccacccgctccatt 80958
>ref|NM_166843.3| Drosophila melanogaster CG18166-RA, transcript variant A (CG18166), mRNA Length = 1822 Score = 38.2 bits (19), Expect = 2.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 atctaccacccgctccatt 24 ||||||||||||||||||| Sbjct: 160 atctaccacccgctccatt 178
>gb|AY059436.1| Drosophila melanogaster GH02584 full length cDNA Length = 1849 Score = 38.2 bits (19), Expect = 2.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 atctaccacccgctccatt 24 ||||||||||||||||||| Sbjct: 160 atctaccacccgctccatt 178
>gb|AE003417.4| Drosophila melanogaster chromosome X, section 1 of 74 of the complete sequence Length = 387740 Score = 38.2 bits (19), Expect = 2.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 atctaccacccgctccatt 24 ||||||||||||||||||| Sbjct: 338459 atctaccacccgctccatt 338441
>ref|NM_111022.2| Arabidopsis thaliana unknown protein AT3G01560 mRNA, complete cds Length = 2010 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 6 atctaccacccgctccat 23 |||||||||||||||||| Sbjct: 1455 atctaccacccgctccat 1438
>gb|AC138529.2| Mus musculus BAC clone RP24-255J24 from chromosome 18, complete sequence Length = 182065 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 37 ccctcactggtccttatt 54 |||||||||||||||||| Sbjct: 23668 ccctcactggtccttatt 23685
>gb|AC009325.8|ATAC009325 Arabidopsis thaliana chromosome III BAC F4P13 genomic sequence, complete sequence Length = 105543 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 6 atctaccacccgctccat 23 |||||||||||||||||| Sbjct: 43315 atctaccacccgctccat 43298
>emb|AL445286.12| Human DNA sequence from clone RP5-1005L2 on chromosome 20 Contains STSs, GSSs and CpG islands, complete sequence Length = 11118 Score = 36.2 bits (18), Expect = 9.3 Identities = 21/22 (95%) Strand = Plus / Minus Query: 8 ctaccacccgctccattttaca 29 |||||||| ||||||||||||| Sbjct: 11099 ctaccacctgctccattttaca 11078
>emb|AL133227.15| Human DNA sequence from clone RP11-394O2 on chromosome 20 Contains the OVCOV1 gene for ovarian cancer overexpressed 1, the 3' end of the ELMO2 gene for engulfment and cell motility 2 (ced-12 homolog, C. elegans) and a CpG island, complete sequence Length = 85566 Score = 36.2 bits (18), Expect = 9.3 Identities = 21/22 (95%) Strand = Plus / Minus Query: 8 ctaccacccgctccattttaca 29 |||||||| ||||||||||||| Sbjct: 81 ctaccacctgctccattttaca 60
>gb|AY090942.1| Arabidopsis thaliana At3g01560 mRNA sequence Length = 1753 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 6 atctaccacccgctccat 23 |||||||||||||||||| Sbjct: 1217 atctaccacccgctccat 1200
>gb|AC113132.3| Homo sapiens chromosome 18, clone RP11-433F3, complete sequence Length = 170609 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 17 gctccattttacattatc 34 |||||||||||||||||| Sbjct: 86480 gctccattttacattatc 86463
>ref|NM_075107.2| Caenorhabditis elegans Y59A8A.2 (Y59A8A.2) mRNA, complete cds Length = 1945 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 gaatctaccacccgctcc 21 |||||||||||||||||| Sbjct: 1783 gaatctaccacccgctcc 1800
>emb|BX823900.1|CNS0A65L Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS8ZH01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1631 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 6 atctaccacccgctccat 23 |||||||||||||||||| Sbjct: 1170 atctaccacccgctccat 1153
>emb|AL132895.2|CEY59A8A Caenorhabditis elegans YAC Y59A8A, complete sequence Length = 45472 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 gaatctaccacccgctcc 21 |||||||||||||||||| Sbjct: 44977 gaatctaccacccgctcc 44994
>emb|BX005261.8| Zebrafish DNA sequence from clone DKEY-20I6 in linkage group 1, complete sequence Length = 228767 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 accacccgctccatttta 27 |||||||||||||||||| Sbjct: 71920 accacccgctccatttta 71903 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 545,095 Number of Sequences: 3902068 Number of extensions: 545095 Number of successful extensions: 31658 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31630 Number of HSP's gapped (non-prelim): 28 length of query: 63 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 42 effective length of database: 17,151,101,840 effective search space: 720346277280 effective search space used: 720346277280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)