ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet35g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransgly... 117 3e-24
2emb|AL590111.14| Human DNA sequence from clone RP11-570F3 on chr... 40 0.59
3gb|BC090193.1| Xenopus laevis cDNA clone MGC:85054 IMAGE:6327047... 40 0.59
4emb|AL009147.1|DMC171D11 Drosophila melanogaster cosmid clone 17... 38 2.3
5gb|AC105774.8| Drosophila melanogaster X BAC RP98-8O5 (Roswell P... 38 2.3
6ref|NM_166843.3| Drosophila melanogaster CG18166-RA, transcript ... 38 2.3
7gb|AY059436.1| Drosophila melanogaster GH02584 full length cDNA 38 2.3
8gb|AE003417.4| Drosophila melanogaster chromosome X, section 1 o... 38 2.3
9ref|NM_111022.2| Arabidopsis thaliana unknown protein AT3G01560 ... 36 9.3
10gb|AC138529.2| Mus musculus BAC clone RP24-255J24 from chromosom... 36 9.3
11gb|AC009325.8|ATAC009325 Arabidopsis thaliana chromosome III BAC... 36 9.3
12emb|AL445286.12| Human DNA sequence from clone RP5-1005L2 on chr... 36 9.3
13emb|AL133227.15| Human DNA sequence from clone RP11-394O2 on chr... 36 9.3
14gb|AY090942.1| Arabidopsis thaliana At3g01560 mRNA sequence 36 9.3
15gb|AC113132.3| Homo sapiens chromosome 18, clone RP11-433F3, com... 36 9.3
16ref|NM_075107.2| Caenorhabditis elegans Y59A8A.2 (Y59A8A.2) mRNA... 36 9.3
17emb|BX823900.1|CNS0A65L Arabidopsis thaliana Full-length cDNA Co... 36 9.3
18emb|AL132895.2|CEY59A8A Caenorhabditis elegans YAC Y59A8A, compl... 36 9.3
19emb|BX005261.8| Zebrafish DNA sequence from clone DKEY-20I6 in l... 36 9.3

>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (XEA)
          Length = 1174

 Score =  117 bits (59), Expect = 3e-24
 Identities = 62/63 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1    gaagaatctaccacccgctccattttacattatcccccctcactggtccttatttatcat 60
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1094 gaagaatctaccacccgctccatttcacattatcccccctcactggtccttatttatcat 1035

               
Query: 61   aca 63
            |||
Sbjct: 1034 aca 1032



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>emb|AL590111.14| Human DNA sequence from clone RP11-570F3 on chromosome 10 Contains
            part of a novel gene (FLJ30499) and the 3' end of a novel
            gene (FLJ30450), complete sequence
          Length = 41069

 Score = 40.1 bits (20), Expect = 0.59
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 39   ctcactggtccttatttatc 58
            ||||||||||||||||||||
Sbjct: 3262 ctcactggtccttatttatc 3243



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>gb|BC090193.1| Xenopus laevis cDNA clone MGC:85054 IMAGE:6327047, complete cds
          Length = 1785

 Score = 40.1 bits (20), Expect = 0.59
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 44   tggtccttatttatcataca 63
            ||||||||||||||||||||
Sbjct: 1462 tggtccttatttatcataca 1443



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>emb|AL009147.1|DMC171D11 Drosophila melanogaster cosmid clone 171D11
          Length = 35000

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 6    atctaccacccgctccatt 24
            |||||||||||||||||||
Sbjct: 4764 atctaccacccgctccatt 4746



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>gb|AC105774.8| Drosophila melanogaster X BAC RP98-8O5 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 170186

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     atctaccacccgctccatt 24
             |||||||||||||||||||
Sbjct: 80976 atctaccacccgctccatt 80958



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>ref|NM_166843.3| Drosophila melanogaster CG18166-RA, transcript variant A (CG18166),
           mRNA
          Length = 1822

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 6   atctaccacccgctccatt 24
           |||||||||||||||||||
Sbjct: 160 atctaccacccgctccatt 178



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>gb|AY059436.1| Drosophila melanogaster GH02584 full length cDNA
          Length = 1849

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 6   atctaccacccgctccatt 24
           |||||||||||||||||||
Sbjct: 160 atctaccacccgctccatt 178



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>gb|AE003417.4| Drosophila melanogaster chromosome X, section 1 of 74 of the complete
              sequence
          Length = 387740

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 6      atctaccacccgctccatt 24
              |||||||||||||||||||
Sbjct: 338459 atctaccacccgctccatt 338441



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>ref|NM_111022.2| Arabidopsis thaliana unknown protein AT3G01560 mRNA, complete cds
          Length = 2010

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 6    atctaccacccgctccat 23
            ||||||||||||||||||
Sbjct: 1455 atctaccacccgctccat 1438



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>gb|AC138529.2| Mus musculus BAC clone RP24-255J24 from chromosome 18, complete
             sequence
          Length = 182065

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 37    ccctcactggtccttatt 54
             ||||||||||||||||||
Sbjct: 23668 ccctcactggtccttatt 23685



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>gb|AC009325.8|ATAC009325 Arabidopsis thaliana chromosome III BAC F4P13 genomic sequence,
             complete sequence
          Length = 105543

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 6     atctaccacccgctccat 23
             ||||||||||||||||||
Sbjct: 43315 atctaccacccgctccat 43298



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>emb|AL445286.12| Human DNA sequence from clone RP5-1005L2 on chromosome 20 Contains
             STSs, GSSs and CpG islands, complete sequence
          Length = 11118

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 8     ctaccacccgctccattttaca 29
             |||||||| |||||||||||||
Sbjct: 11099 ctaccacctgctccattttaca 11078



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>emb|AL133227.15| Human DNA sequence from clone RP11-394O2 on chromosome 20
          Contains the OVCOV1 gene for ovarian cancer
          overexpressed 1, the 3' end of the ELMO2 gene for
          engulfment and cell motility 2 (ced-12 homolog, C.
          elegans) and a CpG island, complete sequence
          Length = 85566

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                
Query: 8  ctaccacccgctccattttaca 29
          |||||||| |||||||||||||
Sbjct: 81 ctaccacctgctccattttaca 60



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>gb|AY090942.1| Arabidopsis thaliana At3g01560 mRNA sequence
          Length = 1753

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 6    atctaccacccgctccat 23
            ||||||||||||||||||
Sbjct: 1217 atctaccacccgctccat 1200



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>gb|AC113132.3| Homo sapiens chromosome 18, clone RP11-433F3, complete sequence
          Length = 170609

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 17    gctccattttacattatc 34
             ||||||||||||||||||
Sbjct: 86480 gctccattttacattatc 86463



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>ref|NM_075107.2| Caenorhabditis elegans Y59A8A.2 (Y59A8A.2) mRNA, complete cds
          Length = 1945

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 4    gaatctaccacccgctcc 21
            ||||||||||||||||||
Sbjct: 1783 gaatctaccacccgctcc 1800



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>emb|BX823900.1|CNS0A65L Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS8ZH01 of Adult vegetative tissue of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1631

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 6    atctaccacccgctccat 23
            ||||||||||||||||||
Sbjct: 1170 atctaccacccgctccat 1153



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>emb|AL132895.2|CEY59A8A Caenorhabditis elegans YAC Y59A8A, complete sequence
          Length = 45472

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 4     gaatctaccacccgctcc 21
             ||||||||||||||||||
Sbjct: 44977 gaatctaccacccgctcc 44994



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>emb|BX005261.8| Zebrafish DNA sequence from clone DKEY-20I6 in linkage group 1,
             complete sequence
          Length = 228767

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 10    accacccgctccatttta 27
             ||||||||||||||||||
Sbjct: 71920 accacccgctccatttta 71903


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 545,095
Number of Sequences: 3902068
Number of extensions: 545095
Number of successful extensions: 31658
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31630
Number of HSP's gapped (non-prelim): 28
length of query: 63
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 42
effective length of database: 17,151,101,840
effective search space: 720346277280
effective search space used: 720346277280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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