| Clone Name | rbaet35g02 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CR936847.6| Mouse DNA sequence from clone DN-393H17 on chromosome 11, complete sequence Length = 170807 Score = 44.1 bits (22), Expect = 0.27 Identities = 25/26 (96%) Strand = Plus / Minus Query: 184 aacaacaacatcaagaaaataaatag 209 ||||||||||||||||||| |||||| Sbjct: 58946 aacaacaacatcaagaaaaaaaatag 58921
>emb|AL596136.5| Mouse DNA sequence from clone RP23-83I13 on chromosome 11 Contains the Rabep1 gene for rabaptin, RAB GTPase binding effector protein 1, a ribosomal protein 23a (Rpl23a) pseudogene, a ribosomal protein 23A (Rpl23a) pseudogene, the Nup88 gene for nucleoporin 88, four novel genes, the C1qbp gene for complement component 1 q subcomponent binding protein, the Dhx33 gene for DEAH (Asp-Glu-Ala-His) box polypeptide 33, a novel pseudogene, a CARD domain pseudogene and six CpG islands, complete sequence Length = 254116 Score = 44.1 bits (22), Expect = 0.27 Identities = 25/26 (96%) Strand = Plus / Minus Query: 184 aacaacaacatcaagaaaataaatag 209 ||||||||||||||||||| |||||| Sbjct: 171035 aacaacaacatcaagaaaaaaaatag 171010
>ref|XM_421895.1| PREDICTED: Gallus gallus similar to Disco-interacting protein 2 homolog (LOC424039), mRNA Length = 15048 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 177 gaaaaggaacaacaacatcaagaaa 201 |||||||||||| |||||||||||| Sbjct: 5263 gaaaaggaacaaaaacatcaagaaa 5287
>ref|XM_713893.1| Candida albicans SC5314 hypothetical protein (CaO19_6024), mRNA Length = 1047 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 184 aacaacaacatcaagaaaataaata 208 |||||||||| |||||||||||||| Sbjct: 566 aacaacaacaacaagaaaataaata 590
>ref|XM_713791.1| Candida albicans SC5314 hypothetical protein (CaO19_13445), mRNA Length = 1047 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 184 aacaacaacatcaagaaaataaata 208 |||||||||| |||||||||||||| Sbjct: 566 aacaacaacaacaagaaaataaata 590
>gb|AC146297.3| Mus musculus BAC clone RP23-260F15 from chromosome 9, complete sequence Length = 176549 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 182 ggaacaacaacatcaagaaaataaa 206 |||||||||||| |||||||||||| Sbjct: 155915 ggaacaacaacaacaagaaaataaa 155891
>emb|AL389915.19| Human DNA sequence from clone RP11-438P9 on chromosome 9 Contains a ribosomal protein S16 (RPS16) pseudogene, a peptidylprolyl isomerase A (cyclophilin A) (PPIA) pseudogene and a CpG island, complete sequence Length = 199601 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 gggtggaagcacagggtggta 245 ||||||||||||||||||||| Sbjct: 42266 gggtggaagcacagggtggta 42246
>dbj|AK136958.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430012G10 product:unclassifiable, full insert sequence Length = 2457 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 182 ggaacaacaacatcaagaaaataaa 206 |||||||||||| |||||||||||| Sbjct: 1981 ggaacaacaacaacaagaaaataaa 1957
>gb|AC174718.1| Gasterosteus aculeatus clone VMRC26-161C14, complete sequence Length = 166000 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 177 gaaaaggaacaacaacatcaa 197 ||||||||||||||||||||| Sbjct: 103769 gaaaaggaacaacaacatcaa 103749
>gb|AC134825.5| Mus musculus BAC clone RP24-456L17 from 9, complete sequence Length = 173663 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 182 ggaacaacaacatcaagaaaataaa 206 |||||||||||| |||||||||||| Sbjct: 141660 ggaacaacaacaacaagaaaataaa 141684
>dbj|AP000729.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-699D4, complete sequence Length = 160535 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 184 aacaacaacatcaagaaaataaata 208 |||||||||||||| |||||||||| Sbjct: 95680 aacaacaacatcaacaaaataaata 95656
>ref|NM_117262.2| Arabidopsis thaliana signal transducer AT4G11920 mRNA, complete cds Length = 1895 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 26 ttagttacaatgctactacaagcattcc 53 |||||||| |||||||||||||||||| Sbjct: 730 ttagttaccttgctactacaagcattcc 703
>gb|AC159130.5| Mus musculus BAC clone RP23-401J13 from chromosome 6, complete sequence Length = 201901 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 aaataaataggcttggtcat 219 |||||||||||||||||||| Sbjct: 153161 aaataaataggcttggtcat 153180
>gb|AC165090.3| Mus musculus BAC clone RP23-95H4 from chromosome 8, complete sequence Length = 252334 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 aacaggagggaacagagacaagtg 86 ||||| |||||||||||||||||| Sbjct: 17116 aacagaagggaacagagacaagtg 17093
>gb|AC131303.8| Mus musculus chromosome 1, clone RP24-119O19, complete sequence Length = 187110 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 gctttggacaaaaacaacca 134 |||||||||||||||||||| Sbjct: 33871 gctttggacaaaaacaacca 33890
>gb|AC109170.10| Mus musculus chromosome 8, clone RP23-87B3, complete sequence Length = 274518 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 aacaggagggaacagagacaagtg 86 ||||| |||||||||||||||||| Sbjct: 39884 aacagaagggaacagagacaagtg 39907
>gb|AC123794.4| Mus musculus BAC clone RP24-315P14 from chromosome 8, complete sequence Length = 187246 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 aacaggagggaacagagacaagtg 86 ||||| |||||||||||||||||| Sbjct: 49189 aacagaagggaacagagacaagtg 49212
>emb|AL021497.1|CEY51A2D Caenorhabditis elegans YAC Y51A2D, complete sequence Length = 139259 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 tcctcctggtaaaccatgac 283 |||||||||||||||||||| Sbjct: 41437 tcctcctggtaaaccatgac 41456
>gb|AC123556.4| Mus musculus BAC clone RP23-176M9 from 1, complete sequence Length = 198900 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 gctttggacaaaaacaacca 134 |||||||||||||||||||| Sbjct: 87958 gctttggacaaaaacaacca 87939
>emb|AL034422.24|HS1141E15 Human DNA sequence from clone RP5-1141E15 on chromosome 20q11.23-12 Contains the 5' end of GHRH gene for growth hormone releasing hormone, the MANBAL gene for mannosidase beta A lysosomal-like, the 5' end of the SRC gene for v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog and a CpG island, complete sequence Length = 113681 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 aacaacatcaagaaaataaa 206 |||||||||||||||||||| Sbjct: 107401 aacaacatcaagaaaataaa 107382
>gb|AY091235.1| Arabidopsis thaliana putative Srw1 protein (At4g11920) mRNA, complete cds Length = 1459 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 26 ttagttacaatgctactacaagcattcc 53 |||||||| |||||||||||||||||| Sbjct: 605 ttagttaccttgctactacaagcattcc 578
>gb|AY063875.1| Arabidopsis thaliana putative Srw1 protein (At4g11920) mRNA, complete cds Length = 1911 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 26 ttagttacaatgctactacaagcattcc 53 |||||||| |||||||||||||||||| Sbjct: 730 ttagttaccttgctactacaagcattcc 703
>emb|BX323591.13| Zebrafish DNA sequence from clone CH211-208C6 in linkage group 7 Contains the gene for a novel protein similar to vertebrate suppression of tumorigenicity 5 (ST5), a novel gene, the gene for a novel protein similar to vertebrate RAS-like estrogen-regulated growth-inhibitor (RERG) and the gene for a novel protein similar to vertebrate serine/threonine kinase 33 (STK33), complete sequence Length = 201768 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 aggaacaacaacatcaagaaaata 204 ||||||||||||| |||||||||| Sbjct: 138857 aggaacaacaacaacaagaaaata 138834
>gb|AC087692.7| Homo sapiens chromosome 8, clone RP11-67D13, complete sequence Length = 146549 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 tgggaaaaggaacaacaaca 193 |||||||||||||||||||| Sbjct: 54198 tgggaaaaggaacaacaaca 54217
>gb|AC090204.11| Homo sapiens chromosome 8, clone RP11-11N9, complete sequence Length = 173191 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 aacaacatcaagaaaataaa 206 |||||||||||||||||||| Sbjct: 147031 aacaacatcaagaaaataaa 147012
>dbj|AK140727.1| Mus musculus adult male corpus striatum cDNA, RIKEN full-length enriched library, clone:C030022J19 product:unclassifiable, full insert sequence Length = 3447 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 aaataaataggcttggtcat 219 |||||||||||||||||||| Sbjct: 2634 aaataaataggcttggtcat 2653
>gb|AC098822.3| Homo sapiens BAC clone RP11-338B23 from 4, complete sequence Length = 181792 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 acaaccaaggtggtcaaatt 147 |||||||||||||||||||| Sbjct: 97097 acaaccaaggtggtcaaatt 97116
>gb|AC131708.3| Mus musculus BAC clone RP24-127P5 from chromosome 6, complete sequence Length = 185214 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 aaataaataggcttggtcat 219 |||||||||||||||||||| Sbjct: 93054 aaataaataggcttggtcat 93073
>ref|NM_075222.2| Caenorhabditis elegans Y51A2D.4 (Y51A2D.4) mRNA, complete cds Length = 2076 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 tcctcctggtaaaccatgac 283 |||||||||||||||||||| Sbjct: 1188 tcctcctggtaaaccatgac 1207
>gb|DQ059035.1| Lotus corniculatus var. japonicus cell cycle switch protein CCS52A mRNA, complete cds Length = 1921 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 26 ttagttacaatgctactacaagcattcc 53 |||||||| |||||||||||||||||| Sbjct: 658 ttagttaccttgctactacaagcattcc 631
>emb|BX826598.1|CNS0A42I Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB45ZF08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1713 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 26 ttagttacaatgctactacaagcattcc 53 |||||||| |||||||||||||||||| Sbjct: 717 ttagttaccttgctactacaagcattcc 690
>gb|AC153890.8| Mus musculus BAC RP23-403C13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 202932 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 aagaaaataaataggcttgg 215 |||||||||||||||||||| Sbjct: 38273 aagaaaataaataggcttgg 38254
>emb|Z72787.1|SCYGR002C S.cerevisiae chromosome VII reading frame ORF YGR002c Length = 2324 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 aggaacaacaacatcaagaa 200 |||||||||||||||||||| Sbjct: 83 aggaacaacaacatcaagaa 64
>emb|Z72786.1|SCYGR001C S.cerevisiae chromosome VII reading frame ORF YGR001c Length = 1973 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 aggaacaacaacatcaagaa 200 |||||||||||||||||||| Sbjct: 1388 aggaacaacaacatcaagaa 1369
>gb|AC102881.14| Mus musculus chromosome 1, clone RP24-389D14, complete sequence Length = 179888 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 178 aaaaggaacaacaacatcaagaaa 201 ||||| |||||||||||||||||| Sbjct: 92161 aaaagaaacaacaacatcaagaaa 92138
>emb|AL935155.13| Mouse DNA sequence from clone RP23-334M3 on chromosome 2, complete sequence Length = 123205 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 248 tacaggtgctctcttgtcctcctg 271 |||||||||||||||| ||||||| Sbjct: 21496 tacaggtgctctcttgccctcctg 21519
>emb|AL808118.8| Mouse DNA sequence from clone RP23-287O8 on chromosome 4, complete sequence Length = 164068 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 190 aacatcaagaaaataaataggctt 213 ||||| |||||||||||||||||| Sbjct: 96805 aacatgaagaaaataaataggctt 96782
>emb|AL669981.11| Mouse DNA sequence from clone RP23-335B9 on chromosome 4, complete sequence Length = 222981 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 aagaaaataaataggcttgg 215 |||||||||||||||||||| Sbjct: 130189 aagaaaataaataggcttgg 130208
>dbj|AP000997.1| Homo sapiens DNA, chromosome 11q23.2, clone:194K16, the region having tumor suppressor activity, complete sequence Length = 130448 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 caaggtggtcaaattcaaga 152 |||||||||||||||||||| Sbjct: 29134 caaggtggtcaaattcaaga 29115 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,373,560 Number of Sequences: 3902068 Number of extensions: 3373560 Number of successful extensions: 67009 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66953 Number of HSP's gapped (non-prelim): 56 length of query: 316 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 294 effective length of database: 17,147,199,772 effective search space: 5041276732968 effective search space used: 5041276732968 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)