ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet35c09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_185166.1| Oryza sativa (japonica cultivar-group), mRNA 90 4e-15
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 90 4e-15
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 90 4e-15
4gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genom... 90 4e-15
5dbj|AK104209.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 4e-15
6dbj|AK104151.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 4e-15
7dbj|AK069405.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 4e-15
8gb|AC103358.7| Mus musculus chromosome 19, clone RP24-358I11, co... 40 3.4
9ref|XM_585994.2| PREDICTED: Bos taurus similar to TC10/CDC42 GTP... 40 3.4
10gb|AC157907.2| Mus musculus chromosome 19, clone RP23-79H21, com... 40 3.4 
>ref|NM_185166.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 966

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 90/105 (85%)
 Strand = Plus / Minus

                                                                       
Query: 156 gatgactcaaaaccgggctgtgacctgggagaacagcgctttgaaatctttagtcggggt 215
           |||| ||||||| |||||||| ||||||||||||| || |||||| ||||| || || ||
Sbjct: 780 gatggctcaaaatcgggctgtaacctgggagaacaacgatttgaagtcttttgttggtgt 721

                                                        
Query: 216 gccctcgccttcaggtttcgaagccaaatcgaatgccttgaactt 260
           |||   ||||||||| || ||||||||||| ||||||||||||||
Sbjct: 720 gcctgtgccttcaggctttgaagccaaatcaaatgccttgaactt 676
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 90/105 (85%)
 Strand = Plus / Plus

                                                                            
Query: 156      gatgactcaaaaccgggctgtgacctgggagaacagcgctttgaaatctttagtcggggt 215
                |||| ||||||| |||||||| ||||||||||||| || |||||| ||||| || || ||
Sbjct: 34222808 gatggctcaaaatcgggctgtaacctgggagaacaacgatttgaagtcttttgttggtgt 34222867

                                                             
Query: 216      gccctcgccttcaggtttcgaagccaaatcgaatgccttgaactt 260
                |||   ||||||||| || ||||||||||| ||||||||||||||
Sbjct: 34222868 gcctgtgccttcaggctttgaagccaaatcaaatgccttgaactt 34222912
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 90/105 (85%)
 Strand = Plus / Plus

                                                                            
Query: 156      gatgactcaaaaccgggctgtgacctgggagaacagcgctttgaaatctttagtcggggt 215
                |||| ||||||| |||||||| ||||||||||||| || |||||| ||||| || || ||
Sbjct: 34313280 gatggctcaaaatcgggctgtaacctgggagaacaacgatttgaagtcttttgttggtgt 34313339

                                                             
Query: 216      gccctcgccttcaggtttcgaagccaaatcgaatgccttgaactt 260
                |||   ||||||||| || ||||||||||| ||||||||||||||
Sbjct: 34313340 gcctgtgccttcaggctttgaagccaaatcaaatgccttgaactt 34313384
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>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete
              sequence
          Length = 143205

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 90/105 (85%)
 Strand = Plus / Minus

                                                                          
Query: 156    gatgactcaaaaccgggctgtgacctgggagaacagcgctttgaaatctttagtcggggt 215
              |||| ||||||| |||||||| ||||||||||||| || |||||| ||||| || || ||
Sbjct: 112190 gatggctcaaaatcgggctgtaacctgggagaacaacgatttgaagtcttttgttggtgt 112131

                                                           
Query: 216    gccctcgccttcaggtttcgaagccaaatcgaatgccttgaactt 260
              |||   ||||||||| || ||||||||||| ||||||||||||||
Sbjct: 112130 gcctgtgccttcaggctttgaagccaaatcaaatgccttgaactt 112086
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>dbj|AK104209.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-C03, full
           insert sequence
          Length = 1036

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 90/105 (85%)
 Strand = Plus / Minus

                                                                       
Query: 156 gatgactcaaaaccgggctgtgacctgggagaacagcgctttgaaatctttagtcggggt 215
           |||| ||||||| |||||||| ||||||||||||| || |||||| ||||| || || ||
Sbjct: 884 gatggctcaaaatcgggctgtaacctgggagaacaacgatttgaagtcttttgttggtgt 825

                                                        
Query: 216 gccctcgccttcaggtttcgaagccaaatcgaatgccttgaactt 260
           |||   ||||||||| || ||||||||||| ||||||||||||||
Sbjct: 824 gcctgtgccttcaggctttgaagccaaatcaaatgccttgaactt 780
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>dbj|AK104151.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-E08, full
           insert sequence
          Length = 1076

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 90/105 (85%)
 Strand = Plus / Minus

                                                                       
Query: 156 gatgactcaaaaccgggctgtgacctgggagaacagcgctttgaaatctttagtcggggt 215
           |||| ||||||| |||||||| ||||||||||||| || |||||| ||||| || || ||
Sbjct: 884 gatggctcaaaatcgggctgtaacctgggagaacaacgatttgaagtcttttgttggtgt 825

                                                        
Query: 216 gccctcgccttcaggtttcgaagccaaatcgaatgccttgaactt 260
           |||   ||||||||| || ||||||||||| ||||||||||||||
Sbjct: 824 gcctgtgccttcaggctttgaagccaaatcaaatgccttgaactt 780
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>dbj|AK069405.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023017D04, full
           insert sequence
          Length = 1088

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 90/105 (85%)
 Strand = Plus / Minus

                                                                       
Query: 156 gatgactcaaaaccgggctgtgacctgggagaacagcgctttgaaatctttagtcggggt 215
           |||| ||||||| |||||||| ||||||||||||| || |||||| ||||| || || ||
Sbjct: 896 gatggctcaaaatcgggctgtaacctgggagaacaacgatttgaagtcttttgttggtgt 837

                                                        
Query: 216 gccctcgccttcaggtttcgaagccaaatcgaatgccttgaactt 260
           |||   ||||||||| || ||||||||||| ||||||||||||||
Sbjct: 836 gcctgtgccttcaggctttgaagccaaatcaaatgccttgaactt 792
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>gb|AC103358.7| Mus musculus chromosome 19, clone RP24-358I11, complete sequence
          Length = 117340

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 95   agcttacacactcatacagt 114
            ||||||||||||||||||||
Sbjct: 8344 agcttacacactcatacagt 8363
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>ref|XM_585994.2| PREDICTED: Bos taurus similar to TC10/CDC42 GTPase-activating protein
            (Sorting nexin 26) (LOC509104), mRNA
          Length = 3380

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 171  ggctgtgacctgggagaaca 190
            ||||||||||||||||||||
Sbjct: 1017 ggctgtgacctgggagaaca 1036
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>gb|AC157907.2| Mus musculus chromosome 19, clone RP23-79H21, complete sequence
          Length = 153518

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    agcttacacactcatacagt 114
             ||||||||||||||||||||
Sbjct: 75202 agcttacacactcatacagt 75183


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,249,999
Number of Sequences: 3902068
Number of extensions: 2249999
Number of successful extensions: 42097
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42065
Number of HSP's gapped (non-prelim): 32
length of query: 263
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 241
effective length of database: 17,147,199,772
effective search space: 4132475145052
effective search space used: 4132475145052
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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