>COP1_PEA (P93471) Ubiquitin ligase protein COP1 (EC 6.3.2.-) (Constitutive|
           photomorphogenesis protein 1)
          Length = 672

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
 Frame = +3

Query: 33  HVYIHERTTES---CAQMNAY---QHANDNYKVVIIIMGAWNKRN*KGMMEYKECKKDAS 194
           H  + E TT S   C   N Y   Q A+ +Y+ ++ +   W     K +MEY+E +K A 
Sbjct: 408 HCPVVEMTTRSKLSCLSWNKYAKNQIASSDYEGIVTV---WTMTTRKSLMEYEEHEKRAW 464

Query: 195 SL 200
           S+
Sbjct: 465 SV 466


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,806,860
Number of Sequences: 219361
Number of extensions: 796530
Number of successful extensions: 1665
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1665
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)