| Clone Name | rbaet34c07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 139 bits (70), Expect = 6e-30 Identities = 109/122 (89%) Strand = Plus / Minus Query: 171 gccttgggtttgggttgaggcctcggcccgaacagacctttgtatagctccctctgcttc 230 ||||| |||||||||| |||||| ||||||||||||||||||||||||||| | || ||| Sbjct: 2238179 gccttcggtttgggttcaggccttggcccgaacagacctttgtatagctccttttgtttc 2238120 Query: 231 tggtacagcgctttatcttgttccgctagcgaccgaagctcccgcatgatctccttgtct 290 |||||||| |||||||| || ||||| |||||||||||||| ||| ||||||||||||| Sbjct: 2238119 tggtacagagctttatcctgctccgcgagcgaccgaagctcgcgctggatctccttgtct 2238060 Query: 291 tc 292 || Sbjct: 2238059 tc 2238058
>dbj|AK065114.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O06, full insert sequence Length = 1396 Score = 139 bits (70), Expect = 6e-30 Identities = 109/122 (89%) Strand = Plus / Minus Query: 171 gccttgggtttgggttgaggcctcggcccgaacagacctttgtatagctccctctgcttc 230 ||||| |||||||||| |||||| ||||||||||||||||||||||||||| | || ||| Sbjct: 1126 gccttcggtttgggttcaggccttggcccgaacagacctttgtatagctccttttgtttc 1067 Query: 231 tggtacagcgctttatcttgttccgctagcgaccgaagctcccgcatgatctccttgtct 290 |||||||| |||||||| || ||||| |||||||||||||| ||| ||||||||||||| Sbjct: 1066 tggtacagagctttatcctgctccgcgagcgaccgaagctcgcgctggatctccttgtct 1007 Query: 291 tc 292 || Sbjct: 1006 tc 1005
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 139 bits (70), Expect = 6e-30 Identities = 109/122 (89%) Strand = Plus / Minus Query: 171 gccttgggtttgggttgaggcctcggcccgaacagacctttgtatagctccctctgcttc 230 ||||| |||||||||| |||||| ||||||||||||||||||||||||||| | || ||| Sbjct: 2238123 gccttcggtttgggttcaggccttggcccgaacagacctttgtatagctccttttgtttc 2238064 Query: 231 tggtacagcgctttatcttgttccgctagcgaccgaagctcccgcatgatctccttgtct 290 |||||||| |||||||| || ||||| |||||||||||||| ||| ||||||||||||| Sbjct: 2238063 tggtacagagctttatcctgctccgcgagcgaccgaagctcgcgctggatctccttgtct 2238004 Query: 291 tc 292 || Sbjct: 2238003 tc 2238002
>emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb0077O07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132703 Score = 139 bits (70), Expect = 6e-30 Identities = 109/122 (89%) Strand = Plus / Minus Query: 171 gccttgggtttgggttgaggcctcggcccgaacagacctttgtatagctccctctgcttc 230 ||||| |||||||||| |||||| ||||||||||||||||||||||||||| | || ||| Sbjct: 120403 gccttcggtttgggttcaggccttggcccgaacagacctttgtatagctccttttgtttc 120344 Query: 231 tggtacagcgctttatcttgttccgctagcgaccgaagctcccgcatgatctccttgtct 290 |||||||| |||||||| || ||||| |||||||||||||| ||| ||||||||||||| Sbjct: 120343 tggtacagagctttatcctgctccgcgagcgaccgaagctcgcgctggatctccttgtct 120284 Query: 291 tc 292 || Sbjct: 120283 tc 120282
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 129 bits (65), Expect = 6e-27 Identities = 158/189 (83%) Strand = Plus / Minus Query: 132 gacaccagccactgccagaagaggacggcgaaatttttggccttgggtttgggttgaggc 191 ||||| ||||||||||||||| | ||| | ||||| ||||| |||||||||| ||| Sbjct: 2216370 gacacgagccactgccagaagcgaacgatggaatttgacgccttcggtttgggttcgggc 2216311 Query: 192 ctcggcccgaacagacctttgtatagctccctctgcttctggtacagcgctttatcttgt 251 || || || || || |||||||| |||||| |||| || |||||||| |||||||| ||| Sbjct: 2216310 cttggaccaaagaggcctttgtacagctccttctgtttttggtacagagctttatcctgt 2216251 Query: 252 tccgctagcgaccgaagctcccgcatgatctccttgtcttccggggagtgtctcttggct 311 ||||| || ||||||||||| ||| ||||||||||||||| ||||| ||| |||||||| Sbjct: 2216250 tccgcgagagaccgaagctcacgctggatctccttgtcttctggggaatgtttcttggct 2216191 Query: 312 ttcaggaag 320 ||||||||| Sbjct: 2216190 ttcaggaag 2216182
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 129 bits (65), Expect = 6e-27 Identities = 158/189 (83%) Strand = Plus / Minus Query: 132 gacaccagccactgccagaagaggacggcgaaatttttggccttgggtttgggttgaggc 191 ||||| ||||||||||||||| | ||| | ||||| ||||| |||||||||| ||| Sbjct: 2224151 gacacgagccactgccagaagcgaacgatggaatttgacgccttcggtttgggttcgggc 2224092 Query: 192 ctcggcccgaacagacctttgtatagctccctctgcttctggtacagcgctttatcttgt 251 || || || || || |||||||| |||||| |||| || |||||||| |||||||| ||| Sbjct: 2224091 cttggaccaaagaggcctttgtacagctccttctgtttttggtacagagctttatcctgt 2224032 Query: 252 tccgctagcgaccgaagctcccgcatgatctccttgtcttccggggagtgtctcttggct 311 ||||| || ||||||||||| ||| ||||||||||||||| ||||| ||| |||||||| Sbjct: 2224031 tccgcgagagaccgaagctcacgctggatctccttgtcttctggggaatgtttcttggct 2223972 Query: 312 ttcaggaag 320 ||||||||| Sbjct: 2223971 ttcaggaag 2223963
>emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 125593 Score = 129 bits (65), Expect = 6e-27 Identities = 158/189 (83%) Strand = Plus / Minus Query: 132 gacaccagccactgccagaagaggacggcgaaatttttggccttgggtttgggttgaggc 191 ||||| ||||||||||||||| | ||| | ||||| ||||| |||||||||| ||| Sbjct: 113064 gacacgagccactgccagaagcgaacgatggaatttgacgccttcggtttgggttcgggc 113005 Query: 192 ctcggcccgaacagacctttgtatagctccctctgcttctggtacagcgctttatcttgt 251 || || || || || |||||||| |||||| |||| || |||||||| |||||||| ||| Sbjct: 113004 cttggaccaaagaggcctttgtacagctccttctgtttttggtacagagctttatcctgt 112945 Query: 252 tccgctagcgaccgaagctcccgcatgatctccttgtcttccggggagtgtctcttggct 311 ||||| || ||||||||||| ||| ||||||||||||||| ||||| ||| |||||||| Sbjct: 112944 tccgcgagagaccgaagctcacgctggatctccttgtcttctggggaatgtttcttggct 112885 Query: 312 ttcaggaag 320 ||||||||| Sbjct: 112884 ttcaggaag 112876
>gb|AY105475.1| Zea mays PCO126622 mRNA sequence Length = 1363 Score = 91.7 bits (46), Expect = 1e-15 Identities = 92/106 (86%), Gaps = 1/106 (0%) Strand = Plus / Minus Query: 195 ggcccgaacagacctttgtatagctccctctgcttctggtacagcgctttatcttgttcc 254 ||||| || ||||||||||| |||||| ||||||||||||| || || || ||||||||| Sbjct: 1115 ggcccaaagagacctttgtagagctccttctgcttctggta-agtgccttgtcttgttcc 1057 Query: 255 gctagcgaccgaagctcccgcatgatctccttgtcttccggggagt 300 || ||| | || |||||||| ||||||||||||||||| ||||||| Sbjct: 1056 gcgagcaaacggagctcccgaatgatctccttgtcttctggggagt 1011
>ref|XM_968741.1| PREDICTED: Tribolium castaneum similar to Sideroflexin-3 (LOC662657), mRNA Length = 1049 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 cagccactgccagaagaggacggc 160 ||||||||||||||||| |||||| Sbjct: 360 cagccactgccagaagatgacggc 337
>emb|X97735.1|PPFPR1 P.pygmaeus DNA for N-formyl peptide receptor Length = 1040 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 ggtttgggttgaggcctcgg 196 |||||||||||||||||||| Sbjct: 984 ggtttgggttgaggcctcgg 965
>gb|AC171177.2| Gallus gallus BAC clone CH261-178G24 from chromosome ul, complete sequence Length = 203278 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 130 gtgacaccagccactgccagaaga 153 |||||| ||||||||||||||||| Sbjct: 17040 gtgacagcagccactgccagaaga 17017 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,218,313 Number of Sequences: 3902068 Number of extensions: 2218313 Number of successful extensions: 39884 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39781 Number of HSP's gapped (non-prelim): 99 length of query: 320 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 298 effective length of database: 17,147,199,772 effective search space: 5109865532056 effective search space used: 5109865532056 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)