ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet34c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 139 6e-30
2dbj|AK065114.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 6e-30
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 139 6e-30
4emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb... 139 6e-30
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 129 6e-27
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 129 6e-27
7emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa... 129 6e-27
8gb|AY105475.1| Zea mays PCO126622 mRNA sequence 92 1e-15
9ref|XM_968741.1| PREDICTED: Tribolium castaneum similar to Sider... 40 4.2
10emb|X97735.1|PPFPR1 P.pygmaeus DNA for N-formyl peptide receptor 40 4.2
11gb|AC171177.2| Gallus gallus BAC clone CH261-178G24 from chromos... 40 4.2

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  139 bits (70), Expect = 6e-30
 Identities = 109/122 (89%)
 Strand = Plus / Minus

                                                                           
Query: 171     gccttgggtttgggttgaggcctcggcccgaacagacctttgtatagctccctctgcttc 230
               ||||| |||||||||| |||||| ||||||||||||||||||||||||||| | || |||
Sbjct: 2238179 gccttcggtttgggttcaggccttggcccgaacagacctttgtatagctccttttgtttc 2238120

                                                                           
Query: 231     tggtacagcgctttatcttgttccgctagcgaccgaagctcccgcatgatctccttgtct 290
               |||||||| |||||||| || ||||| |||||||||||||| |||  |||||||||||||
Sbjct: 2238119 tggtacagagctttatcctgctccgcgagcgaccgaagctcgcgctggatctccttgtct 2238060

                 
Query: 291     tc 292
               ||
Sbjct: 2238059 tc 2238058



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>dbj|AK065114.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O06, full
            insert sequence
          Length = 1396

 Score =  139 bits (70), Expect = 6e-30
 Identities = 109/122 (89%)
 Strand = Plus / Minus

                                                                        
Query: 171  gccttgggtttgggttgaggcctcggcccgaacagacctttgtatagctccctctgcttc 230
            ||||| |||||||||| |||||| ||||||||||||||||||||||||||| | || |||
Sbjct: 1126 gccttcggtttgggttcaggccttggcccgaacagacctttgtatagctccttttgtttc 1067

                                                                        
Query: 231  tggtacagcgctttatcttgttccgctagcgaccgaagctcccgcatgatctccttgtct 290
            |||||||| |||||||| || ||||| |||||||||||||| |||  |||||||||||||
Sbjct: 1066 tggtacagagctttatcctgctccgcgagcgaccgaagctcgcgctggatctccttgtct 1007

              
Query: 291  tc 292
            ||
Sbjct: 1006 tc 1005



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  139 bits (70), Expect = 6e-30
 Identities = 109/122 (89%)
 Strand = Plus / Minus

                                                                           
Query: 171     gccttgggtttgggttgaggcctcggcccgaacagacctttgtatagctccctctgcttc 230
               ||||| |||||||||| |||||| ||||||||||||||||||||||||||| | || |||
Sbjct: 2238123 gccttcggtttgggttcaggccttggcccgaacagacctttgtatagctccttttgtttc 2238064

                                                                           
Query: 231     tggtacagcgctttatcttgttccgctagcgaccgaagctcccgcatgatctccttgtct 290
               |||||||| |||||||| || ||||| |||||||||||||| |||  |||||||||||||
Sbjct: 2238063 tggtacagagctttatcctgctccgcgagcgaccgaagctcgcgctggatctccttgtct 2238004

                 
Query: 291     tc 292
               ||
Sbjct: 2238003 tc 2238002



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>emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb0077O07 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 132703

 Score =  139 bits (70), Expect = 6e-30
 Identities = 109/122 (89%)
 Strand = Plus / Minus

                                                                          
Query: 171    gccttgggtttgggttgaggcctcggcccgaacagacctttgtatagctccctctgcttc 230
              ||||| |||||||||| |||||| ||||||||||||||||||||||||||| | || |||
Sbjct: 120403 gccttcggtttgggttcaggccttggcccgaacagacctttgtatagctccttttgtttc 120344

                                                                          
Query: 231    tggtacagcgctttatcttgttccgctagcgaccgaagctcccgcatgatctccttgtct 290
              |||||||| |||||||| || ||||| |||||||||||||| |||  |||||||||||||
Sbjct: 120343 tggtacagagctttatcctgctccgcgagcgaccgaagctcgcgctggatctccttgtct 120284

                
Query: 291    tc 292
              ||
Sbjct: 120283 tc 120282



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  129 bits (65), Expect = 6e-27
 Identities = 158/189 (83%)
 Strand = Plus / Minus

                                                                           
Query: 132     gacaccagccactgccagaagaggacggcgaaatttttggccttgggtttgggttgaggc 191
               ||||| ||||||||||||||| | |||  | |||||   ||||| ||||||||||  |||
Sbjct: 2216370 gacacgagccactgccagaagcgaacgatggaatttgacgccttcggtttgggttcgggc 2216311

                                                                           
Query: 192     ctcggcccgaacagacctttgtatagctccctctgcttctggtacagcgctttatcttgt 251
               || || || || || |||||||| |||||| |||| || |||||||| |||||||| |||
Sbjct: 2216310 cttggaccaaagaggcctttgtacagctccttctgtttttggtacagagctttatcctgt 2216251

                                                                           
Query: 252     tccgctagcgaccgaagctcccgcatgatctccttgtcttccggggagtgtctcttggct 311
               ||||| || ||||||||||| |||  ||||||||||||||| ||||| ||| ||||||||
Sbjct: 2216250 tccgcgagagaccgaagctcacgctggatctccttgtcttctggggaatgtttcttggct 2216191

                        
Query: 312     ttcaggaag 320
               |||||||||
Sbjct: 2216190 ttcaggaag 2216182



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  129 bits (65), Expect = 6e-27
 Identities = 158/189 (83%)
 Strand = Plus / Minus

                                                                           
Query: 132     gacaccagccactgccagaagaggacggcgaaatttttggccttgggtttgggttgaggc 191
               ||||| ||||||||||||||| | |||  | |||||   ||||| ||||||||||  |||
Sbjct: 2224151 gacacgagccactgccagaagcgaacgatggaatttgacgccttcggtttgggttcgggc 2224092

                                                                           
Query: 192     ctcggcccgaacagacctttgtatagctccctctgcttctggtacagcgctttatcttgt 251
               || || || || || |||||||| |||||| |||| || |||||||| |||||||| |||
Sbjct: 2224091 cttggaccaaagaggcctttgtacagctccttctgtttttggtacagagctttatcctgt 2224032

                                                                           
Query: 252     tccgctagcgaccgaagctcccgcatgatctccttgtcttccggggagtgtctcttggct 311
               ||||| || ||||||||||| |||  ||||||||||||||| ||||| ||| ||||||||
Sbjct: 2224031 tccgcgagagaccgaagctcacgctggatctccttgtcttctggggaatgtttcttggct 2223972

                        
Query: 312     ttcaggaag 320
               |||||||||
Sbjct: 2223971 ttcaggaag 2223963



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>emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from
              chromosome 11 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 125593

 Score =  129 bits (65), Expect = 6e-27
 Identities = 158/189 (83%)
 Strand = Plus / Minus

                                                                          
Query: 132    gacaccagccactgccagaagaggacggcgaaatttttggccttgggtttgggttgaggc 191
              ||||| ||||||||||||||| | |||  | |||||   ||||| ||||||||||  |||
Sbjct: 113064 gacacgagccactgccagaagcgaacgatggaatttgacgccttcggtttgggttcgggc 113005

                                                                          
Query: 192    ctcggcccgaacagacctttgtatagctccctctgcttctggtacagcgctttatcttgt 251
              || || || || || |||||||| |||||| |||| || |||||||| |||||||| |||
Sbjct: 113004 cttggaccaaagaggcctttgtacagctccttctgtttttggtacagagctttatcctgt 112945

                                                                          
Query: 252    tccgctagcgaccgaagctcccgcatgatctccttgtcttccggggagtgtctcttggct 311
              ||||| || ||||||||||| |||  ||||||||||||||| ||||| ||| ||||||||
Sbjct: 112944 tccgcgagagaccgaagctcacgctggatctccttgtcttctggggaatgtttcttggct 112885

                       
Query: 312    ttcaggaag 320
              |||||||||
Sbjct: 112884 ttcaggaag 112876



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>gb|AY105475.1| Zea mays PCO126622 mRNA sequence
          Length = 1363

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 92/106 (86%), Gaps = 1/106 (0%)
 Strand = Plus / Minus

                                                                        
Query: 195  ggcccgaacagacctttgtatagctccctctgcttctggtacagcgctttatcttgttcc 254
            ||||| || ||||||||||| |||||| ||||||||||||| || || || |||||||||
Sbjct: 1115 ggcccaaagagacctttgtagagctccttctgcttctggta-agtgccttgtcttgttcc 1057

                                                          
Query: 255  gctagcgaccgaagctcccgcatgatctccttgtcttccggggagt 300
            || ||| | || |||||||| ||||||||||||||||| |||||||
Sbjct: 1056 gcgagcaaacggagctcccgaatgatctccttgtcttctggggagt 1011



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>ref|XM_968741.1| PREDICTED: Tribolium castaneum similar to Sideroflexin-3
           (LOC662657), mRNA
          Length = 1049

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 137 cagccactgccagaagaggacggc 160
           ||||||||||||||||| ||||||
Sbjct: 360 cagccactgccagaagatgacggc 337



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>emb|X97735.1|PPFPR1 P.pygmaeus DNA for N-formyl peptide receptor
          Length = 1040

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 177 ggtttgggttgaggcctcgg 196
           ||||||||||||||||||||
Sbjct: 984 ggtttgggttgaggcctcgg 965



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>gb|AC171177.2| Gallus gallus BAC clone CH261-178G24 from chromosome ul, complete
             sequence
          Length = 203278

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 130   gtgacaccagccactgccagaaga 153
             |||||| |||||||||||||||||
Sbjct: 17040 gtgacagcagccactgccagaaga 17017


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,218,313
Number of Sequences: 3902068
Number of extensions: 2218313
Number of successful extensions: 39884
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39781
Number of HSP's gapped (non-prelim): 99
length of query: 320
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 298
effective length of database: 17,147,199,772
effective search space: 5109865532056
effective search space used: 5109865532056
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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