ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet34c02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M61146.1|BLYPSAL Hordeum vulgare photosystem I protein (PSI-L) mRNA, complete cds Length = 777 Score = 67.9 bits (34), Expect = 5e-09 Identities = 34/34 (100%) Strand = Plus / Minus Query: 63 ttatgaggaatatgtaaaaattcatttatacata 96 |||||||||||||||||||||||||||||||||| Sbjct: 772 ttatgaggaatatgtaaaaattcatttatacata 739
>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold Length = 1996640 Score = 42.1 bits (21), Expect = 0.30 Identities = 21/21 (100%) Strand = Plus / Minus Query: 72 atatgtaaaaattcatttata 92 ||||||||||||||||||||| Sbjct: 41414 atatgtaaaaattcatttata 41394
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 0.30 Identities = 27/29 (93%) Strand = Plus / Plus Query: 71 aatatgtaaaaattcatttatacataaaa 99 ||||||||||||| ||| ||||||||||| Sbjct: 597087 aatatgtaaaaatacatgtatacataaaa 597115
>gb|AC145409.3| Macropus eugenii clone ME_KBa-528O13, complete sequence Length = 140426 Score = 42.1 bits (21), Expect = 0.30 Identities = 21/21 (100%) Strand = Plus / Minus Query: 72 atatgtaaaaattcatttata 92 ||||||||||||||||||||| Sbjct: 41414 atatgtaaaaattcatttata 41394
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 0.30 Identities = 27/29 (93%) Strand = Plus / Plus Query: 71 aatatgtaaaaattcatttatacataaaa 99 ||||||||||||| ||| ||||||||||| Sbjct: 597087 aatatgtaaaaatacatgtatacataaaa 597115
>emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 115859 Score = 42.1 bits (21), Expect = 0.30 Identities = 27/29 (93%) Strand = Plus / Minus Query: 71 aatatgtaaaaattcatttatacataaaa 99 ||||||||||||| ||| ||||||||||| Sbjct: 51756 aatatgtaaaaatacatgtatacataaaa 51728
>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome Length = 1992676 Score = 42.1 bits (21), Expect = 0.30 Identities = 24/25 (96%) Strand = Plus / Plus Query: 78 aaaaattcatttatacataaaaaac 102 ||||||| ||||||||||||||||| Sbjct: 1102921 aaaaattaatttatacataaaaaac 1102945
>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome Length = 2314078 Score = 40.1 bits (20), Expect = 1.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 aaaaattcatttatacataaaaaa 101 |||| ||||||||||||||||||| Sbjct: 1076454 aaaagttcatttatacataaaaaa 1076477
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 attatgaggaatatgtaaaa 81 |||||||||||||||||||| Sbjct: 1463464 attatgaggaatatgtaaaa 1463483 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 74 atgtaaaaattcatttata 92 ||||||||||||||||||| Sbjct: 4055085 atgtaaaaattcatttata 4055103
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 attatgaggaatatgtaaaa 81 |||||||||||||||||||| Sbjct: 1439128 attatgaggaatatgtaaaa 1439147 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 74 atgtaaaaattcatttata 92 ||||||||||||||||||| Sbjct: 4067251 atgtaaaaattcatttata 4067269
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 attatgaggaatatgtaaaa 81 |||||||||||||||||||| Sbjct: 1439074 attatgaggaatatgtaaaa 1439093 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 74 atgtaaaaattcatttata 92 ||||||||||||||||||| Sbjct: 4067624 atgtaaaaattcatttata 4067642
>gb|AC124346.3| Mus musculus BAC clone RP24-460E12 from chromosome 12, complete sequence Length = 203150 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 aattcatttatacataaaaa 100 |||||||||||||||||||| Sbjct: 175463 aattcatttatacataaaaa 175482
>emb|AM062702.1| Alnus glutinosa mRNA for alcohol dehydrogenase (adh1 gene) Length = 1390 Score = 40.1 bits (20), Expect = 1.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 72 atatgtaaaaattcatttatacataaaa 99 |||||| ||| ||||||||||||||||| Sbjct: 1359 atatgtgaaatttcatttatacataaaa 1332
>gb|AC124572.4| Mus musculus BAC clone RP23-159A20 from 12, complete sequence Length = 170191 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 aattcatttatacataaaaa 100 |||||||||||||||||||| Sbjct: 26673 aattcatttatacataaaaa 26692
>ref|XM_739361.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000047.00.0) partial mRNA Length = 4185 Score = 40.1 bits (20), Expect = 1.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 74 atgtaaaaattcatttatacataaaaaa 101 ||||||||||||| || ||||||||||| Sbjct: 3540 atgtaaaaattcacttgtacataaaaaa 3567
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 attatgaggaatatgtaaaa 81 |||||||||||||||||||| Sbjct: 1474081 attatgaggaatatgtaaaa 1474100 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 74 atgtaaaaattcatttata 92 ||||||||||||||||||| Sbjct: 4109312 atgtaaaaattcatttata 4109330
>emb|AL731538.4| Human DNA sequence from clone RP11-457G5 on chromosome 10 Contains part of the gene for alpha-catenin-like protein (MGC26194) (VR22), complete sequence Length = 163119 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 tatgaggaatatgtaaaaat 83 |||||||||||||||||||| Sbjct: 64642 tatgaggaatatgtaaaaat 64661
>emb|AL513215.7| Human DNA sequence from clone RP11-530P14 on chromosome 6, complete sequence Length = 43320 Score = 40.1 bits (20), Expect = 1.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 taaaaattcatttatacataaaaa 100 |||||||| ||||||||||||||| Sbjct: 41957 taaaaattaatttatacataaaaa 41980
>emb|AL359646.19| Human DNA sequence from clone RP11-570O10 on chromosome 6, complete sequence Length = 84984 Score = 40.1 bits (20), Expect = 1.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 taaaaattcatttatacataaaaa 100 |||||||| ||||||||||||||| Sbjct: 637 taaaaattaatttatacataaaaa 660
>gb|AC122153.4| Oryctolagus cuniculus clone LB1-9L8, complete sequence Length = 216345 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 gaaataagctagtcccaaag 61 |||||||||||||||||||| Sbjct: 196698 gaaataagctagtcccaaag 196679 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 gaaataagctagtcccaaa 60 ||||||||||||||||||| Sbjct: 166708 gaaataagctagtcccaaa 166690
>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold Length = 1889755 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 gaaataagctagtcccaaag 61 |||||||||||||||||||| Sbjct: 437714 gaaataagctagtcccaaag 437695 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 gaaataagctagtcccaaa 60 ||||||||||||||||||| Sbjct: 407724 gaaataagctagtcccaaa 407706
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ttatgaggaatatgtaaaaa 82 |||||||||||||||||||| Sbjct: 4009297 ttatgaggaatatgtaaaaa 4009316
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 atgaggaatatgtaaaaatt 84 |||||||||||||||||||| Sbjct: 24723095 atgaggaatatgtaaaaatt 24723114
>gb|AC068276.7| Homo sapiens BAC clone RP11-127H13 from 2, complete sequence Length = 163719 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 attcatttatacataaaaaa 101 |||||||||||||||||||| Sbjct: 40882 attcatttatacataaaaaa 40901
>gb|AC098650.2| Homo sapiens chromosome 3 clone RP11-654A7, complete sequence Length = 201243 Score = 40.1 bits (20), Expect = 1.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 72 atatgtaaaaattcatttatacataaaa 99 |||| ||||||||||| ||||||||||| Sbjct: 30464 atatataaaaattcatatatacataaaa 30491
>dbj|AP002843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0407B12 Length = 148762 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 atgaggaatatgtaaaaatt 84 |||||||||||||||||||| Sbjct: 91672 atgaggaatatgtaaaaatt 91691
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ttatgaggaatatgtaaaaa 82 |||||||||||||||||||| Sbjct: 3949710 ttatgaggaatatgtaaaaa 3949729
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 attatgaggaatatgtaaaa 81 |||||||||||||||||||| Sbjct: 1439005 attatgaggaatatgtaaaa 1439024 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 74 atgtaaaaattcatttata 92 ||||||||||||||||||| Sbjct: 4067124 atgtaaaaattcatttata 4067142
>emb|AL672067.5| Mouse DNA sequence from clone RP23-5P1 on chromosome X, complete sequence Length = 225196 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 taagctagtcccaaagatta 65 |||||||||||||||||||| Sbjct: 122400 taagctagtcccaaagatta 122381
>dbj|AP002340.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2011F17, complete sequence Length = 165747 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 aaattcatttatacataaaa 99 |||||||||||||||||||| Sbjct: 130058 aaattcatttatacataaaa 130077
>gb|AC102273.9| Mus musculus chromosome 3, clone RP24-285I22, complete sequence Length = 162779 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 83 ttcatttatacataaaaaa 101 ||||||||||||||||||| Sbjct: 140762 ttcatttatacataaaaaa 140780
>gb|AC115697.19| Mus musculus chromosome 7, clone RP24-233E11, complete sequence Length = 161690 Score = 38.2 bits (19), Expect = 4.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 71 aatatgtaaaaattcatttatacataa 97 |||||||||| ||||||||||| |||| Sbjct: 67560 aatatgtaaatattcatttatatataa 67534
>ref|XM_478199.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1062 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 57 caaagattatgaggaatatgtaa 79 |||||||||||| |||||||||| Sbjct: 807 caaagattatgatgaatatgtaa 829
>gb|AC137748.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0076A09, complete sequence Length = 157010 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 83 ttcatttatacataaaaaa 101 ||||||||||||||||||| Sbjct: 142298 ttcatttatacataaaaaa 142316
>gb|AC137747.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0051L16, complete sequence Length = 175461 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 83 ttcatttatacataaaaaa 101 ||||||||||||||||||| Sbjct: 46117 ttcatttatacataaaaaa 46135
>gb|AY335550.1| Pan troglodytes chromosome 3p pericentric inversion breakpoint region, complete sequence Length = 6867 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 79 aaaattcatttatacataaaaaa 101 |||||||||||||||||| |||| Sbjct: 5182 aaaattcatttatacatacaaaa 5160
>gb|AY362683.1| Polypodium furfuraceum ribosomal protein small subunit 4-like (rps4) gene and rps4-trnS intergenic spacer, partial sequence; chloroplast Length = 1068 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 gaaataagctagtcccaaa 60 ||||||||||||||||||| Sbjct: 740 gaaataagctagtcccaaa 722
>gb|AY296710.1| Castianeira sp. MCH-2003 16S ribosomal RNA and tRNA-Leu genes, partial sequence; mitochondrial genes for mitochondrial products Length = 596 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 74 atgtaaaaattcatttata 92 ||||||||||||||||||| Sbjct: 147 atgtaaaaattcatttata 165
>gb|AC129202.3| Mus musculus BAC clone RP24-225J1 from chromosome 13, complete sequence Length = 168558 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 73 tatgtaaaaattcatttatacat 95 ||||||||||||||| ||||||| Sbjct: 150499 tatgtaaaaattcatgtatacat 150477
>gb|AC126678.3| Mus musculus BAC clone RP24-231D7 from chromosome 13, complete sequence Length = 150512 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 73 tatgtaaaaattcatttatacat 95 ||||||||||||||| ||||||| Sbjct: 20967 tatgtaaaaattcatgtatacat 20945
>gb|AC073090.8| Homo sapiens BAC clone RP11-328J2 from 7, complete sequence Length = 116557 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 83 ttcatttatacataaaaaa 101 ||||||||||||||||||| Sbjct: 68559 ttcatttatacataaaaaa 68577
>gb|AC073269.7| Homo sapiens BAC clone RP11-436F9 from 7, complete sequence Length = 137889 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 79 aaaattcatttatacataaaaaa 101 |||| |||||||||||||||||| Sbjct: 91261 aaaagtcatttatacataaaaaa 91239
>gb|AC073958.4| Homo sapiens BAC clone RP11-533L22 from 7, complete sequence Length = 168991 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 82 attcatttatacataaaaa 100 ||||||||||||||||||| Sbjct: 63009 attcatttatacataaaaa 62991
>gb|AC145092.1| Pan troglodytes BAC clone RP43-12J7 from 7, complete sequence Length = 78607 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 attcatttatacataaaaa 100 ||||||||||||||||||| Sbjct: 74155 attcatttatacataaaaa 74173
>gb|AC143356.1| Pan troglodytes BAC clone RP43-64A13 from 7, complete sequence Length = 154864 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 79 aaaattcatttatacataaaaaa 101 |||| |||||||||||||||||| Sbjct: 146088 aaaagtcatttatacataaaaaa 146110
>emb|AL445668.10| Human DNA sequence from clone RP11-234O23 on chromosome 13 Contains the 3' end of a novel gene, complete sequence Length = 168068 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 71 aatatgtaaaaattcattt 89 ||||||||||||||||||| Sbjct: 45426 aatatgtaaaaattcattt 45444
>emb|AL356915.19| Human DNA sequence from clone RP11-179F17 on chromosome 13 Contains the 5' end of the FLT3 gene for fms-related tyrosine kinase 3, a novel gene, a eukaryotic translation elongation factor 1 alpha 1 pseudogene, a novel pseudogene and two CpG islands, complete sequence Length = 194520 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 gaaataagctagtcccaaa 60 ||||||||||||||||||| Sbjct: 62152 gaaataagctagtcccaaa 62170
>emb|AL357275.14| Human DNA sequence from clone RP11-534J23 on chromosome 13, complete sequence Length = 68209 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 attcatttatacataaaaa 100 ||||||||||||||||||| Sbjct: 59956 attcatttatacataaaaa 59974
>emb|AL355140.25| Human DNA sequence from clone RP11-548B3 on chromosome 9 Contains the gene for Friedreich ataxia region gene X123, the 3' end of the APBA1 gene for myloid beta (A4) precursor protein-binding, family A, member 1 (X11), a novel gene and two CpG islands, complete sequence Length = 185096 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 gaaataagctagtcccaaa 60 ||||||||||||||||||| Sbjct: 2993 gaaataagctagtcccaaa 3011
>emb|AL137181.8| Human DNA sequence from clone RP1-23O21 on chromosome 6 Contains an acidic calponin 3 (CNN3) pseudogene, complete sequence Length = 60248 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 atatgtaaaaattcattta 90 ||||||||||||||||||| Sbjct: 8475 atatgtaaaaattcattta 8493
>emb|Z99532.2|SPAC7D4 S.pombe chromosome I cosmid c7D4 Length = 29792 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 80 aaattcatttatacataaa 98 ||||||||||||||||||| Sbjct: 2179 aaattcatttatacataaa 2197
>emb|Z49565.1|SCYJR065C S.cerevisiae chromosome X reading frame ORF YJR065c Length = 1813 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 aaagattatgaggaatatg 76 ||||||||||||||||||| Sbjct: 269 aaagattatgaggaatatg 251
>emb|BX890572.9| Zebrafish DNA sequence from clone CH211-234F20 in linkage group 4 Contains the gene for a novel protein containing two notch (DSL) domains and an EF hand domain, the gene for a novel protein similar to vertebrate myosin binding protein H (MYBPH), the gene for a novel protein sinilar to human and mouse CWF19-like 1, cell cycle control (S. pombe) (CWF19L1), the gene for a novel protein (zgc:55718), the gene for a novel protein containing Kelch motifs and a BTB/POZ domain, the sycp3 gene for synaptonemal complex protein 3, a novel gene and a CpG island, complete sequence Length = 166208 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 74 atgtaaaaattcatttatacata 96 |||||||||||||||||| |||| Sbjct: 26030 atgtaaaaattcatttattcata 26052
>emb|AL591481.5| Zebrafish DNA sequence from clone BUSM1-101L20 in linkage group 2 Contains 37 TCR-alpha V segments (II-1 to II-37 according to annotation by Tatsuya Ota) two of which are pseudogenes (II-21, II-22) and a CpG island, complete sequence Length = 100317 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 74 atgtaaaaattcatttata 92 ||||||||||||||||||| Sbjct: 80610 atgtaaaaattcatttata 80592
>emb|AL592550.11| Zebrafish DNA sequence from clone BUSM1-18F12 in linkage group 2 Contains 37 TCR-alpha V segments (II-11 to II-26, II-28 to II-48) three of which are pseudogenes (II-21, II-22, II-31), complete sequence Length = 96481 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 74 atgtaaaaattcatttata 92 ||||||||||||||||||| Sbjct: 47620 atgtaaaaattcatttata 47602
>emb|BX908384.15| Zebrafish DNA sequence from clone DKEY-38K3 in linkage group 13, complete sequence Length = 213699 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 73 tatgtaaaaattcatttatacat 95 ||||||||||| ||||||||||| Sbjct: 90085 tatgtaaaaatgcatttatacat 90063
>gb|AC012182.7| Homo sapiens chromosome 16 clone RP11-332G1, complete sequence Length = 188926 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 gaaataagctagtcccaaa 60 ||||||||||||||||||| Sbjct: 5944 gaaataagctagtcccaaa 5962
>gb|AC040963.6| Homo sapiens chromosome 18, clone RP11-685A21, complete sequence Length = 146198 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 ctagtcccaaagattatga 68 ||||||||||||||||||| Sbjct: 47265 ctagtcccaaagattatga 47283
>gb|AC107300.6| Homo sapiens 3 BAC RP11-516H5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161699 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 71 aatatgtaaaaattcattt 89 ||||||||||||||||||| Sbjct: 29537 aatatgtaaaaattcattt 29555
>gb|DQ397852.1| Cenarchaeum symbiosum clone C15D08, complete sequence Length = 38754 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 cgacaaccaccaccacgag 28 ||||||||||||||||||| Sbjct: 18227 cgacaaccaccaccacgag 18209
>gb|DQ397850.1| Cenarchaeum symbiosum clone C09B07, complete sequence Length = 40824 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 cgacaaccaccaccacgag 28 ||||||||||||||||||| Sbjct: 25253 cgacaaccaccaccacgag 25271
>gb|DQ397849.1| Cenarchaeum symbiosum clone C08E01, complete sequence Length = 37303 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 cgacaaccaccaccacgag 28 ||||||||||||||||||| Sbjct: 26471 cgacaaccaccaccacgag 26453
>gb|DQ397600.1| Cenarchaeum symbiosum clone C07B08, complete sequence Length = 41295 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 cgacaaccaccaccacgag 28 ||||||||||||||||||| Sbjct: 3816 cgacaaccaccaccacgag 3798
>gb|DQ397575.1| Cenarchaeum symbiosum clone C11D05, complete sequence Length = 41867 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 cgacaaccaccaccacgag 28 ||||||||||||||||||| Sbjct: 21276 cgacaaccaccaccacgag 21258
>emb|BX649403.4| Zebrafish DNA sequence from clone CH211-153M11 in linkage group 13, complete sequence Length = 170097 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 73 tatgtaaaaattcatttatacat 95 ||||||||||| ||||||||||| Sbjct: 32446 tatgtaaaaatgcatttatacat 32468
>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome Length = 2694756 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 agattatgaggaatatgta 78 ||||||||||||||||||| Sbjct: 554239 agattatgaggaatatgta 554221
>gb|AC010543.9| Homo sapiens chromosome 16 clone RP11-440K14, complete sequence Length = 180286 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 gaaataagctagtcccaaa 60 ||||||||||||||||||| Sbjct: 93603 gaaataagctagtcccaaa 93621
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 77 taaaaattcatttatacataaaa 99 |||||||| |||||||||||||| Sbjct: 19898353 taaaaattaatttatacataaaa 19898331
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 57 caaagattatgaggaatatgtaa 79 |||||||||||| |||||||||| Sbjct: 18376646 caaagattatgatgaatatgtaa 18376668
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 83 ttcatttatacataaaaaa 101 ||||||||||||||||||| Sbjct: 15113548 ttcatttatacataaaaaa 15113566
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 4.6 Identities = 28/31 (90%) Strand = Plus / Minus Query: 4 cggggccgacaaccaccaccacgagtccatt 34 ||||||| || ||||||||||| |||||||| Sbjct: 4859081 cggggcccaccaccaccaccaccagtccatt 4859051
>gb|AC102163.14| Mus musculus chromosome 1, clone RP23-431N20, complete sequence Length = 218665 Score = 38.2 bits (19), Expect = 4.6 Identities = 25/27 (92%) Strand = Plus / Plus Query: 72 atatgtaaaaattcatttatacataaa 98 ||||||||| || |||||||||||||| Sbjct: 170335 atatgtaaacatccatttatacataaa 170361
>gb|AC098818.3| Homo sapiens BAC clone RP11-109G23 from 4, complete sequence Length = 216451 Score = 38.2 bits (19), Expect = 4.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 75 tgtaaaaattcatttatacataaaaaa 101 ||||||||||||| ||||| ||||||| Sbjct: 81322 tgtaaaaattcatatatacctaaaaaa 81296
>gb|AC021015.4| Homo sapiens BAC clone RP11-320C1 from 2, complete sequence Length = 148997 Score = 38.2 bits (19), Expect = 4.6 Identities = 25/27 (92%) Strand = Plus / Plus Query: 72 atatgtaaaaattcatttatacataaa 98 |||| |||||||||||||||| ||||| Sbjct: 67967 atatataaaaattcatttatatataaa 67993
>gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 genomic sequence, complete sequence Length = 116932 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 77 taaaaattcatttatacataaaa 99 |||||||| |||||||||||||| Sbjct: 87690 taaaaattaatttatacataaaa 87712
>gb|AC078952.20| Homo sapiens 3 BAC RP11-764E15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169103 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 77 taaaaattcatttatacataaaa 99 |||| |||||||||||||||||| Sbjct: 91933 taaatattcatttatacataaaa 91955
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 77 taaaaattcatttatacataaaa 99 ||||||||||||||| ||||||| Sbjct: 4061411 taaaaattcatttattcataaaa 4061433
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 tcccaaagattatgaggaa 72 ||||||||||||||||||| Sbjct: 742607 tcccaaagattatgaggaa 742625
>gb|AC156989.3| Mus musculus chromosome 1, clone RP23-379L2, complete sequence Length = 188691 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 67 gaggaatatgtaaaaattcattt 89 ||||||||| ||||||||||||| Sbjct: 65379 gaggaatatataaaaattcattt 65357
>dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1073_F05 Length = 124252 Score = 38.2 bits (19), Expect = 4.6 Identities = 28/31 (90%) Strand = Plus / Minus Query: 4 cggggccgacaaccaccaccacgagtccatt 34 ||||||| || ||||||||||| |||||||| Sbjct: 101240 cggggcccaccaccaccaccaccagtccatt 101210
>dbj|AP004046.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1145_F01 Length = 113755 Score = 38.2 bits (19), Expect = 4.6 Identities = 28/31 (90%) Strand = Plus / Minus Query: 4 cggggccgacaaccaccaccacgagtccatt 34 ||||||| || ||||||||||| |||||||| Sbjct: 3820 cggggcccaccaccaccaccaccagtccatt 3790
>dbj|AP004266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0038F10 Length = 153929 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 57 caaagattatgaggaatatgtaa 79 |||||||||||| |||||||||| Sbjct: 106141 caaagattatgatgaatatgtaa 106163
>emb|AL391262.3|CNS06C86 Human chromosome 14 DNA sequence BAC R-817G13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 171296 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 70 gaatatgtaaaaattcatt 88 ||||||||||||||||||| Sbjct: 124951 gaatatgtaaaaattcatt 124933
>emb|BX901908.8| Zebrafish DNA sequence from clone DKEY-268B12 in linkage group 4, complete sequence Length = 210697 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 79 aaaattcatttatacataaaaaa 101 |||||||| |||||||||||||| Sbjct: 80034 aaaattcaattatacataaaaaa 80056
>emb|AL954657.14| Zebrafish DNA sequence from clone CH211-223E21 in linkage group 4, complete sequence Length = 200352 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 79 aaaattcatttatacataaaaaa 101 |||||||| |||||||||||||| Sbjct: 116724 aaaattcaattatacataaaaaa 116746
>emb|BX088554.8| Zebrafish DNA sequence from clone DKEYP-4F12 in linkage group 20, complete sequence Length = 160766 Score = 38.2 bits (19), Expect = 4.6 Identities = 28/31 (90%) Strand = Plus / Plus Query: 56 ccaaagattatgaggaatatgtaaaaattca 86 |||||| || |||||||||||| |||||||| Sbjct: 100273 ccaaaggttttgaggaatatgtgaaaattca 100303
>gb|AC004664.1|AC004664 Homo sapiens chromosome 4 clone C0500H20 map 4p16, complete sequence Length = 172072 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 74 atgtaaaaattcatttata 92 ||||||||||||||||||| Sbjct: 143134 atgtaaaaattcatttata 143116
>emb|AL117694.5|CNS01DRQ Human chromosome 14 DNA sequence BAC R-226F19 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 166279 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 70 gaatatgtaaaaattcatt 88 ||||||||||||||||||| Sbjct: 161219 gaatatgtaaaaattcatt 161237
>gb|DQ332385.1| Synthetic construct Saccharomyces cerevisiae clone FLH201337.01X ARP3 gene, complete sequence Length = 1350 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 58 aaagattatgaggaatatg 76 ||||||||||||||||||| Sbjct: 1288 aaagattatgaggaatatg 1306
>gb|AY648904.1| Graphis scripta small subunit ribosomal RNA gene, partial sequence; mitochondrial Length = 855 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 83 ttcatttatacataaaaaa 101 ||||||||||||||||||| Sbjct: 477 ttcatttatacataaaaaa 459
>gb|L37111.1|YSCACT4A Saccharomyces cerevisiae actin-related protein (ACT4) gene, complete cds Length = 1616 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 58 aaagattatgaggaatatg 76 ||||||||||||||||||| Sbjct: 1390 aaagattatgaggaatatg 1408
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 77 taaaaattcatttatacataaaa 99 |||||||| |||||||||||||| Sbjct: 19909629 taaaaattaatttatacataaaa 19909607
>gb|AC147437.2| Gallus gallus BAC clone CH261-80L21 from chromosome unknown, complete sequence Length = 221338 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 70 gaatatgtaaaaattcatt 88 ||||||||||||||||||| Sbjct: 164488 gaatatgtaaaaattcatt 164506
>gb|AC147639.3| Mus musculus BAC clone RP23-115M6 from 13, complete sequence Length = 187485 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 73 tatgtaaaaattcatttatacat 95 ||||||||||||||| ||||||| Sbjct: 146130 tatgtaaaaattcatgtatacat 146152
>gb|L47993.1|YSCORFSAA Saccharomyces cerevisiae ORF genes, complete cds Length = 61989 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 aaagattatgaggaatatg 76 ||||||||||||||||||| Sbjct: 22123 aaagattatgaggaatatg 22105
>emb|AL935175.6| Mouse DNA sequence from clone RP23-397E13 on chromosome 2, complete sequence Length = 158592 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 68 aggaatatgtaaaaattcattta 90 |||||||||||| |||||||||| Sbjct: 36105 aggaatatgtaagaattcattta 36083
>gb|L37350.1|YSCTCEP Saccharomyces cerevisiae (clone p701-6) Tcp1 epsilon gene, complete cds Length = 2123 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 aaagattatgaggaatatg 76 ||||||||||||||||||| Sbjct: 2096 aaagattatgaggaatatg 2078 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,461,813 Number of Sequences: 3902068 Number of extensions: 1461813 Number of successful extensions: 109539 Number of sequences better than 10.0: 97 Number of HSP's better than 10.0 without gapping: 97 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108457 Number of HSP's gapped (non-prelim): 1082 length of query: 104 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 83 effective length of database: 17,151,101,840 effective search space: 1423541452720 effective search space used: 1423541452720 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
