ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet34a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YR753_MIMIV (Q5UP09) Putative F-box/LRR-repeat protein R753 30 1.3
2EPN2_HUMAN (O95208) Epsin-2 (EPS-15-interacting protein 2) 29 3.8
3HTS_DROME (Q02645) Protein hu-li tai shao (Adducin-like protein) 28 5.0
4ARP_EUGGR (Q04732) Calcium-binding acidic-repeat protein precurs... 28 8.4
5COBT_MYCTU (P63841) Nicotinate-nucleotide--dimethylbenzimidazole... 28 8.4
6COBT_MYCBO (P63842) Nicotinate-nucleotide--dimethylbenzimidazole... 28 8.4
7PCY1_YEAST (P13259) Choline-phosphate cytidylyltransferase (EC 2... 28 8.4

>YR753_MIMIV (Q5UP09) Putative F-box/LRR-repeat protein R753|
          Length = 751

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +1

Query: 1   SSCE*DSDAQEIEEVSYELGKVRPAGRRDELPVGDGAFSLHRDGAGEASDDSHGDSARAS 180
           SS   DSD   I +VSY +G+V      D    G  + S   D   ++SDDS G +   S
Sbjct: 219 SSDSSDSDLDAISDVSYVVGEVSDDDNSDS---GSDSSSDSSDDNSDSSDDSSGKNTSKS 275



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>EPN2_HUMAN (O95208) Epsin-2 (EPS-15-interacting protein 2)|
          Length = 642

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +1

Query: 4   SCE*DSDAQEIEEVSYELGKVRPAGRRDELPVGDGAFSLHRDGAGEASDDSHGDSARASL 183
           +C+  + A     VS EL + RP    +E      A ++ R+ A +      GD  R  +
Sbjct: 249 TCDRAARASTSPRVSSELEQARPQTSGEEELQLQLALAMSREVAEQEERLRRGDDLRLQM 308

Query: 184 ALEQPRR 204
           ALE+ RR
Sbjct: 309 ALEESRR 315



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>HTS_DROME (Q02645) Protein hu-li tai shao (Adducin-like protein)|
          Length = 1156

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
 Frame = +1

Query: 49  YELGKVRPAGRRDELPVGDGAFSLHRD--GAGEASDDSHGDS------ARASLALEQPR 201
           Y + KV P  + +  PV DG  S+H +  GAG  + +S   S      A AS++L + R
Sbjct: 692 YVIHKVEPVSKHNYPPVNDGNMSIHHNESGAGFMAQESSVISSTPVRNALASVSLPEER 750



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>ARP_EUGGR (Q04732) Calcium-binding acidic-repeat protein precursor (ARP)|
          Length = 695

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 94  PVGDGAFSLHRDGAGEASDDSHGDSARASLALEQPRRGE 210
           P+G GA   HR   G+  DD   D A  ++    P+ G+
Sbjct: 124 PMGGGAEVRHRPQNGDTDDDGLTDGAEVNVHRTNPQDGD 162



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>COBT_MYCTU (P63841) Nicotinate-nucleotide--dimethylbenzimidazole|
           phosphoribosyltransferase (EC 2.4.2.21) (NN:DBI PRT)
           (N(1)-alpha-phosphoribosyltransferase)
          Length = 361

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 180 RCASGVPMRVIASLAGAIAVEAKGAVADGKLVTAAS 73
           RCA G  +  IA      AV     + DG  VTAA+
Sbjct: 233 RCAGGADLAAIAGFCAQAAVRRTPLLLDGVAVTAAA 268



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>COBT_MYCBO (P63842) Nicotinate-nucleotide--dimethylbenzimidazole|
           phosphoribosyltransferase (EC 2.4.2.21) (NN:DBI PRT)
           (N(1)-alpha-phosphoribosyltransferase)
          Length = 361

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 180 RCASGVPMRVIASLAGAIAVEAKGAVADGKLVTAAS 73
           RCA G  +  IA      AV     + DG  VTAA+
Sbjct: 233 RCAGGADLAAIAGFCAQAAVRRTPLLLDGVAVTAAA 268



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>PCY1_YEAST (P13259) Choline-phosphate cytidylyltransferase (EC 2.7.7.15)|
           (Phosphorylcholine transferase) (CTP:phosphocholine
           cytidylyltransferase) (CT) (CCT)
          Length = 424

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 16  DSDAQEIEEVSYELGKVRPAGRRDELPVGDGAFSLHRDG 132
           + +A+   E+  EL K RP G R  LP  D    ++ DG
Sbjct: 72  EKEARYTNELPKELRKYRPKGFRFNLPPTDRPIRIYADG 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,514,412
Number of Sequences: 219361
Number of extensions: 337625
Number of successful extensions: 1099
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 80,573,946
effective HSP length: 48
effective length of database: 70,044,618
effective search space used: 1681070832
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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