ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet33f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473298.1| Oryza sativa (japonica cultivar-group), predic... 96 9e-17
2emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4,... 96 9e-17
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 96 9e-17
4dbj|AK069219.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 9e-17
5dbj|AK061426.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 9e-17
6gb|AY110878.1| Zea mays CL16535_1 mRNA sequence 64 3e-07
7ref|XM_479649.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.076
8ref|XM_507416.1| PREDICTED Oryza sativa (japonica cultivar-group... 46 0.076
9ref|XM_506615.2| PREDICTED Oryza sativa (japonica cultivar-group... 46 0.076
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.076
11dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.076
12dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.076
13dbj|AK104211.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.076
14dbj|AK070102.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.076
15dbj|AK061172.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.076
16gb|DQ124078.1| Coffea arabica clone MN-SSH1-D12 mRNA sequence 44 0.30
17gb|U39743.2| Caenorhabditis elegans cosmid R173, complete sequence 42 1.2
18gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.2
19dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
20dbj|AK072326.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
21gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
22emb|AL772419.4|CNS08C9X Oryza sativa chromosome 12, . BAC OJ1115... 42 1.2
23gb|AF268389.1| Salmonella enteritidis plasmid pJ Rep (rep) gene,... 40 4.7
24gb|CP000088.1| Thermobifida fusca YX, complete genome 40 4.7
25emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 4.7
26emb|AJ278573.1|SNA278573 Streptomyces natalensis pimaricin biosy... 40 4.7
27emb|AJ132222.1|SNA132222 Streptomyces natalensis pimS1 gene 40 4.7
28dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 4.7
29gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome 40 4.7
30gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 4.7
31dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 4.7
32emb|AL929464.9| Zebrafish DNA sequence from clone CH211-255L14 i... 40 4.7
33gb|AC026351.29| Homo sapiens 12 BAC RP11-176O5 (Roswell Park Can... 40 4.7
34gb|BC083571.1| Rattus norvegicus progesterone receptor membrane ... 40 4.7
35dbj|AK115640.1| Ciona intestinalis cDNA, clone:cilv010n11, full ... 40 4.7
36ref|NM_001008374.1| Rattus norvegicus progesterone receptor memb... 40 4.7 
>ref|XM_473298.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 711

 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 90/104 (86%)
 Strand = Plus / Minus

                                                                       
Query: 245 gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 304
           |||||||| || ||||| |||||||||||||  ||| | ||||| ||  |||||||||| 
Sbjct: 659 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 600

                                                       
Query: 305 accaggagcgcctccgggccgtacttgtcgagcccggagctctg 348
           ||||||| |||||||| ||||||||||||||| |||||||||||
Sbjct: 599 accaggaacgcctccgcgccgtacttgtcgaggccggagctctg 556
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>emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24,
             complete sequence
          Length = 121056

 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 90/104 (86%)
 Strand = Plus / Plus

                                                                         
Query: 245   gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 304
             |||||||| || ||||| |||||||||||||  ||| | ||||| ||  |||||||||| 
Sbjct: 87576 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 87635

                                                         
Query: 305   accaggagcgcctccgggccgtacttgtcgagcccggagctctg 348
             ||||||| |||||||| ||||||||||||||| |||||||||||
Sbjct: 87636 accaggaacgcctccgcgccgtacttgtcgaggccggagctctg 87679
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 90/104 (86%)
 Strand = Plus / Plus

                                                                            
Query: 245      gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 304
                |||||||| || ||||| |||||||||||||  ||| | ||||| ||  |||||||||| 
Sbjct: 26648018 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 26648077

                                                            
Query: 305      accaggagcgcctccgggccgtacttgtcgagcccggagctctg 348
                ||||||| |||||||| ||||||||||||||| |||||||||||
Sbjct: 26648078 accaggaacgcctccgcgccgtacttgtcgaggccggagctctg 26648121
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>dbj|AK069219.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012J01, full
           insert sequence
          Length = 1046

 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 90/104 (86%)
 Strand = Plus / Minus

                                                                       
Query: 245 gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 304
           |||||||| || ||||| |||||||||||||  ||| | ||||| ||  |||||||||| 
Sbjct: 842 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 783

                                                       
Query: 305 accaggagcgcctccgggccgtacttgtcgagcccggagctctg 348
           ||||||| |||||||| ||||||||||||||| |||||||||||
Sbjct: 782 accaggaacgcctccgcgccgtacttgtcgaggccggagctctg 739
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>dbj|AK061426.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-G12, full
           insert sequence
          Length = 1078

 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 90/104 (86%)
 Strand = Plus / Minus

                                                                       
Query: 245 gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 304
           |||||||| || ||||| |||||||||||||  ||| | ||||| ||  |||||||||| 
Sbjct: 840 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 781

                                                       
Query: 305 accaggagcgcctccgggccgtacttgtcgagcccggagctctg 348
           ||||||| |||||||| ||||||||||||||| |||||||||||
Sbjct: 780 accaggaacgcctccgcgccgtacttgtcgaggccggagctctg 737
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>gb|AY110878.1| Zea mays CL16535_1 mRNA sequence
          Length = 1068

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                       
Query: 293 gccgtgaagttgaccaggagcgcctccgggccgtacttgtcgag 336
           ||||||||||||||||||| |||||| | |||||||||||||||
Sbjct: 801 gccgtgaagttgaccaggaacgcctcggcgccgtacttgtcgag 758
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>ref|XM_479649.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 968

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 254 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 313
           |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 743 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 684

                  
Query: 314 gcctccg 320
           |||||||
Sbjct: 683 gcctccg 677
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>ref|XM_507416.1| PREDICTED Oryza sativa (japonica cultivar-group), B1147B12.18 mRNA
          Length = 1107

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 254 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 313
           |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 753 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 694

                  
Query: 314 gcctccg 320
           |||||||
Sbjct: 693 gcctccg 687
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>ref|XM_506615.2| PREDICTED Oryza sativa (japonica cultivar-group), B1147B12.18 mRNA
          Length = 1158

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 254 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 313
           |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 749 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 690

                  
Query: 314 gcctccg 320
           |||||||
Sbjct: 689 gcctccg 683
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
             complete sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                         
Query: 254   gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 313
             |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 89838 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 89897

                    
Query: 314   gcctccg 320
             |||||||
Sbjct: 89898 gcctccg 89904
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>dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0015C07
          Length = 149079

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                        
Query: 254  gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 313
            |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 5173 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 5232

                   
Query: 314  gcctccg 320
            |||||||
Sbjct: 5233 gcctccg 5239
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>dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1147B12
          Length = 127902

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                         
Query: 254   gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 313
             |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 89838 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 89897

                    
Query: 314   gcctccg 320
             |||||||
Sbjct: 89898 gcctccg 89904
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>dbj|AK104211.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-D02, full
           insert sequence
          Length = 1107

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 254 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 313
           |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 753 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 694

                  
Query: 314 gcctccg 320
           |||||||
Sbjct: 693 gcctccg 687
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>dbj|AK070102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047K10, full
           insert sequence
          Length = 968

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 254 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 313
           |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 743 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 684

                  
Query: 314 gcctccg 320
           |||||||
Sbjct: 683 gcctccg 677
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>dbj|AK061172.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-B08, full
           insert sequence
          Length = 1160

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 254 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 313
           |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 749 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 690

                  
Query: 314 gcctccg 320
           |||||||
Sbjct: 689 gcctccg 683
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>gb|DQ124078.1| Coffea arabica clone MN-SSH1-D12 mRNA sequence
          Length = 227

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 290 agggccgtgaagttgaccagga 311
           ||||||||||||||||||||||
Sbjct: 144 agggccgtgaagttgaccagga 165
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>gb|U39743.2| Caenorhabditis elegans cosmid R173, complete sequence
          Length = 34861

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 18   agtgcagttttcagtaatcaa 38
            |||||||||||||||||||||
Sbjct: 6299 agtgcagttttcagtaatcaa 6319
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 255     cgacgaccacggcggcgccga 275
               |||||||||||||||||||||
Sbjct: 3806661 cgacgaccacggcggcgccga 3806641
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 254      gcgacgaccacggcggcgccg 274
                |||||||||||||||||||||
Sbjct: 10623378 gcgacgaccacggcggcgccg 10623398
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>dbj|AK072326.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026M23, full
           insert sequence
          Length = 3395

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 254 gcgacgaccacggcggcgccg 274
           |||||||||||||||||||||
Sbjct: 322 gcgacgaccacggcggcgccg 342
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 254      gcgacgaccacggcggcgccg 274
                |||||||||||||||||||||
Sbjct: 10623260 gcgacgaccacggcggcgccg 10623280
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>emb|AL772419.4|CNS08C9X Oryza sativa chromosome 12, . BAC OJ1115_G02 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 112916

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 254   gcgacgaccacggcggcgccg 274
             |||||||||||||||||||||
Sbjct: 86681 gcgacgaccacggcggcgccg 86701
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>gb|AF268389.1| Salmonella enteritidis plasmid pJ Rep (rep) gene, complete cds
          Length = 2096

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 237 ccgcgggagcgacggcagcg 256
           ||||||||||||||||||||
Sbjct: 567 ccgcgggagcgacggcagcg 586
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 273     cgaggagcaccacgacgagg 292
               ||||||||||||||||||||
Sbjct: 1219685 cgaggagcaccacgacgagg 1219666
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 257     acgaccacggcggcgccgag 276
               ||||||||||||||||||||
Sbjct: 2117350 acgaccacggcggcgccgag 2117331
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>emb|AJ278573.1|SNA278573 Streptomyces natalensis pimaricin biosynthetic gene cluster
          Length = 84985

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   ccaggagcgcctccgggccg 325
             ||||||||||||||||||||
Sbjct: 60989 ccaggagcgcctccgggccg 61008
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>emb|AJ132222.1|SNA132222 Streptomyces natalensis pimS1 gene
          Length = 20394

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   ccaggagcgcctccgggccg 325
             ||||||||||||||||||||
Sbjct: 20164 ccaggagcgcctccgggccg 20145
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 253     agcgacgaccacggcggcgc 272
               ||||||||||||||||||||
Sbjct: 3028884 agcgacgaccacggcggcgc 3028903
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>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 255     cgacgaccacggcggcgccg 274
               ||||||||||||||||||||
Sbjct: 2489130 cgacgaccacggcggcgccg 2489111
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 258    cgaccacggcggcgccgagg 277
              ||||||||||||||||||||
Sbjct: 462681 cgaccacggcggcgccgagg 462662
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 255     cgacgaccacggcggcgccgaggagcac 282
               ||||||||||||||| ||||||| ||||
Sbjct: 1127665 cgacgaccacggcggagccgaggggcac 1127638
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>emb|AL929464.9| Zebrafish DNA sequence from clone CH211-255L14 in linkage group 25,
             complete sequence
          Length = 193619

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    acacacaaaccagacgtgaa 77
             ||||||||||||||||||||
Sbjct: 36775 acacacaaaccagacgtgaa 36756
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>gb|AC026351.29| Homo sapiens 12 BAC RP11-176O5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 179350

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   cagacgttcaacaatcagca 158
             ||||||||||||||||||||
Sbjct: 96679 cagacgttcaacaatcagca 96698
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>gb|BC083571.1| Rattus norvegicus progesterone receptor membrane component 2, mRNA
           (cDNA clone MGC:93874 IMAGE:7112203), complete cds
          Length = 1974

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 238 cgcgggagcgacggcagcga 257
           ||||||||||||||||||||
Sbjct: 88  cgcgggagcgacggcagcga 107
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>dbj|AK115640.1| Ciona intestinalis cDNA, clone:cilv010n11, full insert sequence
          Length = 2701

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 301 gttgaccaggagcgcctccg 320
           ||||||||||||||||||||
Sbjct: 461 gttgaccaggagcgcctccg 480
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>ref|NM_001008374.1| Rattus norvegicus progesterone receptor membrane component 2
           (Pgrmc2), mRNA
          Length = 1974

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 238 cgcgggagcgacggcagcga 257
           ||||||||||||||||||||
Sbjct: 88  cgcgggagcgacggcagcga 107


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,056,185
Number of Sequences: 3902068
Number of extensions: 2056185
Number of successful extensions: 37880
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37468
Number of HSP's gapped (non-prelim): 412
length of query: 352
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 330
effective length of database: 17,147,199,772
effective search space: 5658575924760
effective search space used: 5658575924760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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