ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet33e02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY108343.1| Zea mays PCO065510 mRNA sequence 103 4e-19
2ref|XM_470547.1| Oryza sativa (japonica cultivar-group), predic... 68 2e-08
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 68 2e-08
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
5dbj|AK119228.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
6dbj|AK100798.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
7dbj|AK099232.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
8dbj|AK061335.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
9dbj|AK060840.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
10gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome... 68 2e-08
11emb|CR936503.1| Lactobacillus sakei strain 23K complete genome 42 1.3
12emb|CR753890.27| Zebrafish DNA sequence from clone CH211-207D8 i... 42 1.3
13emb|AL627344.8| Human DNA sequence from clone RP11-39H24 on chro... 40 5.1
14ref|XM_782830.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.1
15gb|AC134432.4| Mus musculus BAC clone RP24-389K11 from chromosom... 40 5.1
16gb|AC123908.3| Homo sapiens chromosome 16 clone CTD-2542L18, com... 40 5.1
17gb|AC058784.17|AC058784 Homo sapiens chromosome 13 clone RP11-28... 40 5.1
18emb|AM233362.1| Francisella tularensis subsp. holarctica strain ... 40 5.1
19emb|AJ749949.1| Francisella tularensis subsp. tularensis SCHU S4... 40 5.1
20emb|AL806516.4| Mouse DNA sequence from clone RP23-453N20 on chr... 40 5.1 
>gb|AY108343.1| Zea mays PCO065510 mRNA sequence
          Length = 1496

 Score =  103 bits (52), Expect = 4e-19
 Identities = 73/80 (91%)
 Strand = Plus / Plus

                                                                       
Query: 300 aggcgtccatgcgcgccgggtactggtcgatgcagtccagccaggggctcctggacgggc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||| |  |  ||||
Sbjct: 369 aggcgtccatgcgcgccgggtactggtcgatgcagtccagccaggggctgcgcgcggggc 428

                               
Query: 360 ggcgcacgcgtccgacggcg 379
           |||||||||| | |||||||
Sbjct: 429 ggcgcacgcggcggacggcg 448
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>ref|XM_470547.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1788

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 302  gcgtccatgcgcgccgggtactggtcgatgcagtccagccaggggctcctggacgggcgg 361
            |||| |||||| ||||||||||| |||| |||||||||||| ||||| |  | |||||||
Sbjct: 1784 gcgttcatgcgagccgggtactgctcgacgcagtccagccacgggctgcgcgccgggcgg 1725

                              
Query: 362  cgcacgcgtccgacggcg 379
            |||||||| | |||||||
Sbjct: 1724 cgcacgcggcggacggcg 1707
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                           
Query: 302     gcgtccatgcgcgccgggtactggtcgatgcagtccagccaggggctcctggacgggcgg 361
               |||| |||||| ||||||||||| |||| |||||||||||| ||||| |  | |||||||
Sbjct: 4253220 gcgttcatgcgagccgggtactgctcgacgcagtccagccacgggctgcgcgccgggcgg 4253161

                                 
Query: 362     cgcacgcgtccgacggcg 379
               |||||||| | |||||||
Sbjct: 4253160 cgcacgcggcggacggcg 4253143
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                           
Query: 302     gcgtccatgcgcgccgggtactggtcgatgcagtccagccaggggctcctggacgggcgg 361
               |||| |||||| ||||||||||| |||| |||||||||||| ||||| |  | |||||||
Sbjct: 4253335 gcgttcatgcgagccgggtactgctcgacgcagtccagccacgggctgcgcgccgggcgg 4253276

                                 
Query: 362     cgcacgcgtccgacggcg 379
               |||||||| | |||||||
Sbjct: 4253275 cgcacgcggcggacggcg 4253258
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>dbj|AK119228.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-A08, full
            insert sequence
          Length = 1912

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 302  gcgtccatgcgcgccgggtactggtcgatgcagtccagccaggggctcctggacgggcgg 361
            |||| |||||| ||||||||||| |||| |||||||||||| ||||| |  | |||||||
Sbjct: 1679 gcgttcatgcgagccgggtactgctcgacgcagtccagccacgggctgcgcgccgggcgg 1620

                              
Query: 362  cgcacgcgtccgacggcg 379
            |||||||| | |||||||
Sbjct: 1619 cgcacgcggcggacggcg 1602
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>dbj|AK100798.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121F20, full
           insert sequence
          Length = 662

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                       
Query: 302 gcgtccatgcgcgccgggtactggtcgatgcagtccagccaggggctcctggacgggcgg 361
           |||| |||||| ||||||||||| |||| |||||||||||| ||||| |  | |||||||
Sbjct: 429 gcgttcatgcgagccgggtactgctcgacgcagtccagccacgggctgcgcgccgggcgg 370

                             
Query: 362 cgcacgcgtccgacggcg 379
           |||||||| | |||||||
Sbjct: 369 cgcacgcggcggacggcg 352
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>dbj|AK099232.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094M20, full
            insert sequence
          Length = 1903

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 302  gcgtccatgcgcgccgggtactggtcgatgcagtccagccaggggctcctggacgggcgg 361
            |||| |||||| ||||||||||| |||| |||||||||||| ||||| |  | |||||||
Sbjct: 1670 gcgttcatgcgagccgggtactgctcgacgcagtccagccacgggctgcgcgccgggcgg 1611

                              
Query: 362  cgcacgcgtccgacggcg 379
            |||||||| | |||||||
Sbjct: 1610 cgcacgcggcggacggcg 1593
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>dbj|AK061335.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-B10, full
            insert sequence
          Length = 1909

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 302  gcgtccatgcgcgccgggtactggtcgatgcagtccagccaggggctcctggacgggcgg 361
            |||| |||||| ||||||||||| |||| |||||||||||| ||||| |  | |||||||
Sbjct: 1679 gcgttcatgcgagccgggtactgctcgacgcagtccagccacgggctgcgcgccgggcgg 1620

                              
Query: 362  cgcacgcgtccgacggcg 379
            |||||||| | |||||||
Sbjct: 1619 cgcacgcggcggacggcg 1602
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>dbj|AK060840.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D04, full
            insert sequence
          Length = 1907

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 302  gcgtccatgcgcgccgggtactggtcgatgcagtccagccaggggctcctggacgggcgg 361
            |||| |||||| ||||||||||| |||| |||||||||||| ||||| |  | |||||||
Sbjct: 1674 gcgttcatgcgagccgggtactgctcgacgcagtccagccacgggctgcgcgccgggcgg 1615

                              
Query: 362  cgcacgcgtccgacggcg 379
            |||||||| | |||||||
Sbjct: 1614 cgcacgcggcggacggcg 1597
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>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0076N15, complete sequence
          Length = 134307

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                         
Query: 302   gcgtccatgcgcgccgggtactggtcgatgcagtccagccaggggctcctggacgggcgg 361
             |||| |||||| ||||||||||| |||| |||||||||||| ||||| |  | |||||||
Sbjct: 81835 gcgttcatgcgagccgggtactgctcgacgcagtccagccacgggctgcgcgccgggcgg 81776

                               
Query: 362   cgcacgcgtccgacggcg 379
             |||||||| | |||||||
Sbjct: 81775 cgcacgcggcggacggcg 81758
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>emb|CR936503.1| Lactobacillus sakei strain 23K complete genome
          Length = 1884661

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 120    acaactgctacaacaccagca 140
              |||||||||||||||||||||
Sbjct: 187000 acaactgctacaacaccagca 186980
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>emb|CR753890.27| Zebrafish DNA sequence from clone CH211-207D8 in linkage group 9,
              complete sequence
          Length = 201771

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 186    ttacatgcaaatccattagcc 206
              |||||||||||||||||||||
Sbjct: 163393 ttacatgcaaatccattagcc 163373
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>emb|AL627344.8| Human DNA sequence from clone RP11-39H24 on chromosome 13, complete
             sequence
          Length = 97057

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    atgattaaaacccttaataa 114
             ||||||||||||||||||||
Sbjct: 26015 atgattaaaacccttaataa 25996
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>ref|XM_782830.1| PREDICTED: Strongylocentrotus purpuratus similar to CG4006-PA,
            isoform A (LOC582897), mRNA
          Length = 1077

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 38   tttcacacaagagcgcgcac 57
            ||||||||||||||||||||
Sbjct: 1020 tttcacacaagagcgcgcac 1039
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>gb|AC134432.4| Mus musculus BAC clone RP24-389K11 from chromosome 8, complete sequence
          Length = 150334

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   caaatccattagcctgcact 212
             ||||||||||||||||||||
Sbjct: 78811 caaatccattagcctgcact 78830
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>gb|AC123908.3| Homo sapiens chromosome 16 clone CTD-2542L18, complete sequence
          Length = 185321

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 331   gcagtccagccaggggctcc 350
             ||||||||||||||||||||
Sbjct: 29847 gcagtccagccaggggctcc 29866
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>gb|AC058784.17|AC058784 Homo sapiens chromosome 13 clone RP11-288O16, complete sequence
          Length = 163781

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     atgattaaaacccttaataa 114
              ||||||||||||||||||||
Sbjct: 125752 atgattaaaacccttaataa 125771
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>emb|AM233362.1| Francisella tularensis subsp. holarctica strain LVS complete genome
          Length = 1895994

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 127     ctacaacaccagcacaaatt 146
               ||||||||||||||||||||
Sbjct: 1715372 ctacaacaccagcacaaatt 1715353
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>emb|AJ749949.1| Francisella tularensis subsp. tularensis SCHU S4 complete genome
          Length = 1892819

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   ctacaacaccagcacaaatt 146
             ||||||||||||||||||||
Sbjct: 79459 ctacaacaccagcacaaatt 79478
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>emb|AL806516.4| Mouse DNA sequence from clone RP23-453N20 on chromosome X, complete
             sequence
          Length = 179534

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    aagttgacataagtttcaca 44
             ||||||||||||||||||||
Sbjct: 86401 aagttgacataagtttcaca 86382


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,445,891
Number of Sequences: 3902068
Number of extensions: 2445891
Number of successful extensions: 56272
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56180
Number of HSP's gapped (non-prelim): 91
length of query: 379
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 357
effective length of database: 17,147,199,772
effective search space: 6121550318604
effective search space used: 6121550318604
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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