ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet33e01 |
|---|---|
| Clone Library Name | barley_pub |
>CBIO2_LISMO (Q8Y454) Cobalt import ATP-binding protein cbiO 2| Length = 279 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/57 (26%), Positives = 26/57 (45%) Frame = +2 Query: 167 QQYQRLEKIMTGYNTVQRYRYKI*RTETQTVEYISISIHQGSNHAVAVHQLHPSLFP 337 + + RLE + Y ++Y K Q E++++ H GS + L+ LFP Sbjct: 3 ESFVRLEHVFYKYEDTEKYAVKDVSISAQKGEWVALVGHNGSGKSTIAKLLNGLLFP 59
>CBIO2_LISMF (Q71WH7) Cobalt import ATP-binding protein cbiO 2| Length = 279 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/57 (26%), Positives = 26/57 (45%) Frame = +2 Query: 167 QQYQRLEKIMTGYNTVQRYRYKI*RTETQTVEYISISIHQGSNHAVAVHQLHPSLFP 337 + + RLE + Y ++Y K Q E++++ H GS + L+ LFP Sbjct: 3 ESFVRLEHVFYKYEDTEKYAVKDVSISAQKGEWVALVGHNGSGKSTIAKLLNGLLFP 59
>CBIO2_LISIN (Q927N8) Cobalt import ATP-binding protein cbiO 2| Length = 279 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/57 (26%), Positives = 26/57 (45%) Frame = +2 Query: 167 QQYQRLEKIMTGYNTVQRYRYKI*RTETQTVEYISISIHQGSNHAVAVHQLHPSLFP 337 + + RLE + Y ++Y K Q E++++ H GS + L+ LFP Sbjct: 3 ESFVRLEHVFYKYEDTEKYAVKDVSISAQKGEWVALVGHNGSGKSTIAKLLNGLLFP 59
>YOO4_CAEEL (P34636) Hypothetical protein ZK507.4| Length = 206 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/54 (25%), Positives = 26/54 (48%) Frame = +2 Query: 68 DKLVTRTHKITRFTS*CGTNNHMHSHSRHCRHDQQYQRLEKIMTGYNTVQRYRY 229 D L+ + KI C + H H +R C+ + +Y R++K +R++Y Sbjct: 118 DDLMRKLEKIVPCRPNCNVSVHPHC-TRQCKCEYEYHRMQKWCKPPRIEERFKY 170
>PER1_LYCES (P15003) Suberization-associated anionic peroxidase 1 precursor (EC| 1.11.1.7) (TMP1) Length = 364 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%) Frame = -2 Query: 338 SETRKGAADARL-LHDCFLDEC 276 +ETR GA+ RL HDCF+D C Sbjct: 96 AETRMGASLIRLHFHDCFVDGC 117
>PERX_SOLTU (P12437) Suberization-associated anionic peroxidase (EC 1.11.1.7)| (POPA) (Fragment) Length = 351 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%) Frame = -2 Query: 338 SETRKGAADARL-LHDCFLDEC 276 +ETR GA+ RL HDCF+D C Sbjct: 83 AETRMGASLIRLHFHDCFVDGC 104
>PERN_IPOBA (O04796) Neutral peroxidase precursor (EC 1.11.1.7) (SwPN1)| Length = 348 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%) Frame = -2 Query: 338 SETRKGAADARL-LHDCFLDEC 276 +ETR GA+ RL HDCF+D C Sbjct: 86 AETRMGASLIRLHFHDCFVDGC 107
>PER2_LYCES (P15004) Suberization-associated anionic peroxidase 2 precursor (EC| 1.11.1.7) (TMP2) Length = 363 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%) Frame = -2 Query: 338 SETRKGAADARL-LHDCFLDEC 276 +ETR GA+ RL HDCF+D C Sbjct: 95 NETRMGASLIRLHFHDCFVDGC 116
>TORA_PASMU (Q9CK41) Trimethylamine-N-oxide reductase precursor (EC 1.7.2.3)| (TMAO reductase) (Trimethylamine oxidase) Length = 823 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +2 Query: 71 KLVTRTHKITRFTS*CGTNNHMHSHSRHCRHDQQYQRLEKIMT 199 K+ +K+ FT C NH H HS + Q +QRLE I++ Sbjct: 461 KITYAPYKMAIFTG-C---NHWHRHSERNKMKQAFQRLETIVS 499
>SNF1_CANTR (O94168) Carbon catabolite derepressing protein kinase (EC| 2.7.11.1) Length = 619 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Frame = +2 Query: 119 GTNNHMHSHSRHCRHDQQYQRLEKIMTGYNTVQRY-RYKI*RTETQ-TVEYISISIHQGS 292 G + H H H H H QQ + I N R RY+I +T + + + ++ H G+ Sbjct: 15 GDHQHHHHHHHHHHHSQQPAQPIPIDPNVNPANRIGRYQIIKTLGEGSFGKVKLAQHVGT 74 Query: 293 NHAVAV 310 VA+ Sbjct: 75 GQKVAL 80
>IL5RA_MOUSE (P21183) Interleukin-5 receptor alpha chain precursor (IL-5R-alpha)| (CD125 antigen) Length = 415 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 7/57 (12%) Frame = -3 Query: 211 CIVPCHDFF*SLVLLIMSAVPAMAVHVIVSAALACEPG-------YLVCTSHQLILS 62 C+ P H+ F + V I+ + VSA L PG L CT+H ++ S Sbjct: 83 CVTPLHEGFAASVRTILKSSHTTLASSWVSAELKAPPGSPGTSVTNLTCTTHTVVSS 139
>PERA2_ARMRU (P80679) Peroxidase A2 (EC 1.11.1.7)| Length = 305 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Frame = -2 Query: 350 RVMHSETRKGAADARL-LHDCFLDEC 276 + S+TR GA+ RL HDCF+D C Sbjct: 24 QAFQSDTRIGASLIRLHFHDCFVDGC 49
>TWIST_DROER (Q8I1G0) Protein twist| Length = 490 Score = 27.3 bits (59), Expect = 9.1 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +2 Query: 131 HMHSHSRHCRHDQQYQR 181 H+HSH H +H QQ Q+ Sbjct: 55 HLHSHQHHQQHQQQQQQ 71
>ERG2_NEUCR (Q92254) C-8 sterol isomerase (Delta-8--delta-7 sterol isomerase)| Length = 256 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -2 Query: 155 SAGYGCACDC*CRISL*TWL 96 S+G C C C CR S+ WL Sbjct: 25 SSGSSCRCSCRCRCSIGGWL 44
>SNF1_CANAL (P52497) Carbon catabolite derepressing protein kinase (EC| 2.7.11.1) Length = 620 Score = 27.3 bits (59), Expect = 9.1 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Frame = +2 Query: 125 NNHMHSHSRHCRHDQQYQRLEKIMTGYNTVQRY-RYKI*RTETQ-TVEYISISIHQGSNH 298 +NH H H H ++ Q Q+ I N R RY+I +T + + + ++ H G+ Sbjct: 18 HNHHHHHHHHHHNENQSQQQVPIDPAANPANRIGRYQILKTLGEGSFGKVKLAQHLGTGQ 77 Query: 299 AVAV 310 VA+ Sbjct: 78 KVAL 81 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,736,068 Number of Sequences: 219361 Number of extensions: 1002492 Number of successful extensions: 2314 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2238 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2304 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
