ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaet33d11 |
|---|---|
| Clone Library Name | barley_pub |
>UL21_PRVN3 (Q00703) Protein UL21 homolog| Length = 523 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +3 Query: 228 GDVSRLIISTCMVHAPACLDRSGLRRP 308 G+V R++++ +VHAPA D +G P Sbjct: 384 GEVMRMLVNAAVVHAPAIADPAGASPP 410
>MY18B_HUMAN (Q8IUG5) Myosin-18B (Myosin XVIIIb)| Length = 2567 Score = 29.3 bits (64), Expect = 2.4 Identities = 25/91 (27%), Positives = 39/91 (42%) Frame = +3 Query: 75 GTYVRSL*LKPLIMMTTATTPAQINQSSNLNQRHCMQLHANPLACTYPRGCGDVSRLIIS 254 GT ++L ++ T A++ A + + + +Q ++L + L R SRL Sbjct: 1148 GTSQQALQRSRMVRRTFASSLAAVRRKAPCSQ---IKLQMDALTSMIKR-----SRLHFI 1199 Query: 255 TCMVHAPACLDRSGLRRPCAPGTGRCSPARG 347 C+V P RSG P P GR P G Sbjct: 1200 HCLVPNPVVESRSGQESPPPPQPGRDKPGAG 1230
>OBSCN_HUMAN (Q5VST9) Obscurin (Obscurin-myosin light chain kinase)| (Obscurin-MLCK) (Obscurin-RhoGEF) Length = 7968 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = -3 Query: 384 WRAVGRVRRPSRSPWLDCIDQYP 316 W A+ R RR SR P LD I + P Sbjct: 4740 WEALARKRRMSREPTLDSISELP 4762
>ACPS_BURPS (Q63S99) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)| (Holo-ACP synthase) (4'-phosphopantetheinyl transferase acpS) Length = 143 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = -3 Query: 384 WRAVGRVRRPSRSPWLDCIDQYPARMDA*GLTDR 283 WRA+ + RPS P++ + A +DA G+T R Sbjct: 79 WRALQTLNRPSGEPYVVASGELAAWLDARGITAR 112
>ACPS_BURMA (Q62LS6) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)| (Holo-ACP synthase) (4'-phosphopantetheinyl transferase acpS) Length = 143 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = -3 Query: 384 WRAVGRVRRPSRSPWLDCIDQYPARMDA*GLTDR 283 WRA+ + RPS P++ + A +DA G+T R Sbjct: 79 WRALQTLNRPSGEPYVVASGELAAWLDARGITAR 112
>SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precursor (Acetyl LDL| receptor) (Scavenger receptor class F member 1) Length = 830 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Frame = +3 Query: 207 CTYPRGCGDVSRLIISTCMVHAPACLDRSGLRRPCAPGT--GRCSPARGS 350 C +P CG R +T + H S RRPC T RC A G+ Sbjct: 129 CEFPCACGPHGRCDPATGVCHCEPGWWSSTCRRPCQCNTAAARCEQATGA 178 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/54 (27%), Positives = 17/54 (31%), Gaps = 3/54 (5%) Frame = +3 Query: 207 CTYPRGCGDVSRLIISTCMVHAPACLDRSGL---RRPCAPGTGRCSPARGSWTG 359 CT P G + H C G PC+P TG C W G Sbjct: 237 CTCPPGFRGARCELPCPAGSHGVQCAHSCGRCKHNEPCSPDTGSCESCEPGWNG 290
>NOTC3_HUMAN (Q9UM47) Neurogenic locus notch homolog protein 3 precursor (Notch| 3) [Contains: Notch 3 extracellular truncation; Notch 3 intracellular domain] Length = 2321 Score = 28.1 bits (61), Expect = 5.3 Identities = 24/84 (28%), Positives = 32/84 (38%) Frame = +3 Query: 84 VRSL*LKPLIMMTTATTPAQINQSSNLNQRHCMQLHANPLACTYPRGCGDVSRLIISTCM 263 VR+L L L+ A P ++ S N C QL + AC P G + C Sbjct: 24 VRALPLLLLLAGPGAAAPPCLDGSPCANGGRCTQLPSREAACLCPPGWVGERCQLEDPC- 82 Query: 264 VHAPACLDRSGLRRPCAPGTGRCS 335 H+ C R + GT R S Sbjct: 83 -HSGPCAGRGVCQSSVVAGTARFS 105
>SF3A2_HUMAN (Q15428) Splicing factor 3A subunit 2 (Spliceosome-associated| protein 62) (SAP 62) (SF3a66) Length = 464 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -2 Query: 364 APPVQEPLAGLHRPVPGAH 308 AP V P +G+H P PG H Sbjct: 319 APGVHPPTSGVHPPAPGVH 337 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -2 Query: 364 APPVQEPLAGLHRPVPGAH 308 AP V P +G+H P PG H Sbjct: 291 APVVHPPASGVHPPAPGVH 309
>SMRD3_MOUSE (Q6P9Z1) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily D member 3 (60 kDa BRG-1/Brm-associated factor subunit C) (BRG1-associated factor 60C) (mBAF60c) Length = 483 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -2 Query: 382 ARRRTRAPPVQEPLAGLHRPVPGAHGRLRPDRSRQ 278 AR+R PP Q G +PVP A R R + R+ Sbjct: 68 ARKRAAPPPGQSQAQGQGQPVPTAPARSRSAKRRK 102
>SF3A2_MOUSE (Q62203) Splicing factor 3A subunit 2 (Spliceosome-associated| protein 62) (SAP 62) (SF3a66) Length = 475 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -2 Query: 364 APPVQEPLAGLHRPVPGAH 308 AP V P +G+H P PG H Sbjct: 302 APVVHPPTSGVHPPAPGVH 320 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -2 Query: 364 APPVQEPLAGLHRPVPGAH 308 AP V P +G+H P PG H Sbjct: 281 APVVHPPTSGVHPPAPGVH 299
>PYRF_PROMP (Q7V0D8) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP| decarboxylase) (OMPDCase) (OMPdecase) Length = 239 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/52 (30%), Positives = 25/52 (48%) Frame = +3 Query: 123 TATTPAQINQSSNLNQRHCMQLHANPLACTYPRGCGDVSRLIISTCMVHAPA 278 T P+ I NLN++ + L + + T C +VS+L + VHA A Sbjct: 43 TREGPSVIKILKNLNKKIFLDLKFHDIPNTMSAACYEVSKLGVDIISVHASA 94
>GIDB_METCA (Q60CS4) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 205 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +1 Query: 268 MRLLVSIGQASGVHARRVLVDAVQPGAPG 354 + LL S+ AS +H RRVL PG PG Sbjct: 49 LHLLDSLSIASFLHGRRVLDVGTGPGLPG 77
>THII_STRR6 (Q8DQ92) Probable thiamine biosynthesis protein thiI| Length = 404 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -3 Query: 360 RPSRSPWLDCIDQYPARMDA*GLTDR 283 RP +P + +QY ARMD GL +R Sbjct: 352 RPKTNPKIKNAEQYEARMDVEGLVER 377
>THII_STRPN (Q97RE1) Probable thiamine biosynthesis protein thiI| Length = 404 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -3 Query: 360 RPSRSPWLDCIDQYPARMDA*GLTDR 283 RP +P + +QY ARMD GL +R Sbjct: 352 RPKTNPKIKNAEQYEARMDVEGLVER 377 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,773,909 Number of Sequences: 219361 Number of extensions: 989977 Number of successful extensions: 3154 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2971 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3153 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
