ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet33b03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_506943.1| PREDICTED Oryza sativa (japonica cultivar-group... 66 1e-07
2ref|XM_467513.1| Oryza sativa (japonica cultivar-group), mRNA 66 1e-07
3ref|XM_506944.1| PREDICTED Oryza sativa (japonica cultivar-group... 66 1e-07
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
5dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
6dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
7dbj|AK105989.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
8dbj|AK101967.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
9dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
10dbj|AP003457.3| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
11dbj|AP003456.3| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
12ref|NM_192718.1| Oryza sativa (japonica cultivar-group), predic... 44 0.38
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.38
14dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.38
15gb|AC113277.8| Mus musculus chromosome 3, clone RP23-386C15, com... 42 1.5
16gb|AC147575.1| Homo sapiens chromosome 5 clone RP11-998B18, comp... 40 6.0
17gb|AC145138.2| Homo sapiens chromosome 5 clone RP11-1280N14, com... 40 6.0
18gb|AC142525.2| Homo sapiens chromosome 5 clone RP11-1275J23, com... 40 6.0
19gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 6.0
20emb|AL583838.7| Human DNA sequence from clone RP11-536O4 on chro... 40 6.0
21emb|AL391600.16| Human DNA sequence from clone RP11-210L5 on chr... 40 6.0
22gb|AC146335.1| Homo sapiens chromosome 5 clone RP11-1305N21, com... 40 6.0
23emb|AL731861.9| Zebrafish DNA sequence from clone BUSM1-46I22 in... 40 6.0
24emb|AL672213.5| Zebrafish DNA sequence from clone BUSM1-73O4 Con... 40 6.0
25emb|AL672145.5| Zebrafish DNA sequence from clone BUSM1-182H3 Co... 40 6.0
26emb|AL596027.11| Zebrafish DNA sequence from clone XX-51F19 in l... 40 6.0
27gb|AC119735.3| Homo sapiens 3 BAC RP11-78E9 (Roswell Park Cancer... 40 6.0
28gb|AC109487.3| Homo sapiens chromosome 5 clone RP11-551B22, comp... 40 6.0
29gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 6.0
30gb|AC010355.7| Homo sapiens chromosome 5 clone CTD-2027K22, comp... 40 6.0
31gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 6.0
32gb|AC044797.5|AC044797 Homo sapiens chromosome 5 clone RP11-195E... 40 6.0
33emb|BX649377.8| Zebrafish DNA sequence from clone CH211-196J1 in... 40 6.0
34gb|AC138827.3| Homo sapiens chromosome 5 clone RP11-1151M9, comp... 40 6.0
35dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome 40 6.0
36dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
37dbj|AP003510.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
38dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
39dbj|AK063231.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
40emb|AL672166.8| Zebrafish DNA sequence from clone XX-134G18, com... 40 6.0
41emb|CT572983.7| Mouse DNA sequence from clone RP23-110N1 on chro... 40 6.0
42emb|AL450303.10| Human DNA sequence from clone RP11-245D2 on chr... 40 6.0
43emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on ch... 40 6.0
44dbj|AP006146.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 6.0
45emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chro... 40 6.0 
>ref|XM_506943.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_D06.19
           mRNA
          Length = 1716

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 86/103 (83%), Gaps = 3/103 (2%)
 Strand = Plus / Plus

                                                                       
Query: 251 gctgccgccgacgttgtatagcacctcgatggtccgctgctggacgtggccgatgatacc 310
           ||||| |||||||| ||| || |||||||  ||||||||||| ||||  |||||||| ||
Sbjct: 315 gctgctgccgacgtcgtacaggacctcgaacgtccgctgctgcacgttcccgatgatgcc 374

                                                      
Query: 311 ggtggaaccgtcgccgccgccggtggaggcgaacgcgaggcag 353
           |||||  ||||   || ||||||||| ||||||||||||||||
Sbjct: 375 ggtggtcccgt---cgtcgccggtggcggcgaacgcgaggcag 414
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>ref|XM_467513.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1716

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 86/103 (83%), Gaps = 3/103 (2%)
 Strand = Plus / Minus

                                                                        
Query: 251  gctgccgccgacgttgtatagcacctcgatggtccgctgctggacgtggccgatgatacc 310
            ||||| |||||||| ||| || |||||||  ||||||||||| ||||  |||||||| ||
Sbjct: 1402 gctgctgccgacgtcgtacaggacctcgaacgtccgctgctgcacgttcccgatgatgcc 1343

                                                       
Query: 311  ggtggaaccgtcgccgccgccggtggaggcgaacgcgaggcag 353
            |||||  ||||   || ||||||||| ||||||||||||||||
Sbjct: 1342 ggtggtcccgt---cgtcgccggtggcggcgaacgcgaggcag 1303
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>ref|XM_506944.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_D06.19 mRNA
          Length = 1737

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 86/103 (83%), Gaps = 3/103 (2%)
 Strand = Plus / Minus

                                                                        
Query: 251  gctgccgccgacgttgtatagcacctcgatggtccgctgctggacgtggccgatgatacc 310
            ||||| |||||||| ||| || |||||||  ||||||||||| ||||  |||||||| ||
Sbjct: 1408 gctgctgccgacgtcgtacaggacctcgaacgtccgctgctgcacgttcccgatgatgcc 1349

                                                       
Query: 311  ggtggaaccgtcgccgccgccggtggaggcgaacgcgaggcag 353
            |||||  ||||   || ||||||||| ||||||||||||||||
Sbjct: 1348 ggtggtcccgt---cgtcgccggtggcggcgaacgcgaggcag 1309
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 86/103 (83%), Gaps = 3/103 (2%)
 Strand = Plus / Plus

                                                                            
Query: 251      gctgccgccgacgttgtatagcacctcgatggtccgctgctggacgtggccgatgatacc 310
                ||||| |||||||| ||| || |||||||  ||||||||||| ||||  |||||||| ||
Sbjct: 29911310 gctgctgccgacgtcgtacaggacctcgaacgtccgctgctgcacgttcccgatgatgcc 29911369

                                                           
Query: 311      ggtggaaccgtcgccgccgccggtggaggcgaacgcgaggcag 353
                |||||  ||||   || ||||||||| ||||||||||||||||
Sbjct: 29911370 ggtggtcccgt---cgtcgccggtggcggcgaacgcgaggcag 29911409



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 248      ggcgctgccgccgacgttgt 267
                ||||||||||||||||||||
Sbjct: 10947658 ggcgctgccgccgacgttgt 10947677
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>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0654B04
          Length = 156907

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 86/103 (83%), Gaps = 3/103 (2%)
 Strand = Plus / Plus

                                                                         
Query: 251   gctgccgccgacgttgtatagcacctcgatggtccgctgctggacgtggccgatgatacc 310
             ||||| |||||||| ||| || |||||||  ||||||||||| ||||  |||||||| ||
Sbjct: 11586 gctgctgccgacgtcgtacaggacctcgaacgtccgctgctgcacgttcccgatgatgcc 11645

                                                        
Query: 311   ggtggaaccgtcgccgccgccggtggaggcgaacgcgaggcag 353
             |||||  ||||   || ||||||||| ||||||||||||||||
Sbjct: 11646 ggtggtcccgt---cgtcgccggtggcggcgaacgcgaggcag 11685
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>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_D06
          Length = 112768

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 86/103 (83%), Gaps = 3/103 (2%)
 Strand = Plus / Plus

                                                                         
Query: 251   gctgccgccgacgttgtatagcacctcgatggtccgctgctggacgtggccgatgatacc 310
             ||||| |||||||| ||| || |||||||  ||||||||||| ||||  |||||||| ||
Sbjct: 68275 gctgctgccgacgtcgtacaggacctcgaacgtccgctgctgcacgttcccgatgatgcc 68334

                                                        
Query: 311   ggtggaaccgtcgccgccgccggtggaggcgaacgcgaggcag 353
             |||||  ||||   || ||||||||| ||||||||||||||||
Sbjct: 68335 ggtggtcccgt---cgtcgccggtggcggcgaacgcgaggcag 68374
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>dbj|AK105989.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G11, full
            insert sequence
          Length = 1716

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 86/103 (83%), Gaps = 3/103 (2%)
 Strand = Plus / Minus

                                                                        
Query: 251  gctgccgccgacgttgtatagcacctcgatggtccgctgctggacgtggccgatgatacc 310
            ||||| |||||||| ||| || |||||||  ||||||||||| ||||  |||||||| ||
Sbjct: 1402 gctgctgccgacgtcgtacaggacctcgaacgtccgctgctgcacgttcccgatgatgcc 1343

                                                       
Query: 311  ggtggaaccgtcgccgccgccggtggaggcgaacgcgaggcag 353
            |||||  ||||   || ||||||||| ||||||||||||||||
Sbjct: 1342 ggtggtcccgt---cgtcgccggtggcggcgaacgcgaggcag 1303
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>dbj|AK101967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076I21, full
            insert sequence
          Length = 1736

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 86/103 (83%), Gaps = 3/103 (2%)
 Strand = Plus / Minus

                                                                        
Query: 251  gctgccgccgacgttgtatagcacctcgatggtccgctgctggacgtggccgatgatacc 310
            ||||| |||||||| ||| || |||||||  ||||||||||| ||||  |||||||| ||
Sbjct: 1407 gctgctgccgacgtcgtacaggacctcgaacgtccgctgctgcacgttcccgatgatgcc 1348

                                                       
Query: 311  ggtggaaccgtcgccgccgccggtggaggcgaacgcgaggcag 353
            |||||  ||||   || ||||||||| ||||||||||||||||
Sbjct: 1347 ggtggtcccgt---cgtcgccggtggcggcgaacgcgaggcag 1308
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                         
Query: 221     tcagcacgcgcgacggcggaacccgacggcgctgccgccgacgttgtatagcacctcg 278
               |||||| |||| ||||||||| ||||||| || ||||||||||| ||| |||||||||
Sbjct: 1154129 tcagcaggcgccacggcggaagccgacggagccgccgccgacgtcgtagagcacctcg 1154072



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 318     ccgtcgccgccgccggtggaggcg 341
               |||||||||||| |||||||||||
Sbjct: 4963459 ccgtcgccgccggcggtggaggcg 4963482



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 318     ccgtcgccgccgccggtggaggcg 341
               |||||||||||| |||||||||||
Sbjct: 4948339 ccgtcgccgccggcggtggaggcg 4948362
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>dbj|AP003457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0660D08
          Length = 146915

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                        
Query: 221    tcagcacgcgcgacggcggaacccgacggcgctgccgccgacgttgtatagcacctcg 278
              |||||| |||| ||||||||| ||||||| || ||||||||||| ||| |||||||||
Sbjct: 130352 tcagcaggcgccacggcggaagccgacggagccgccgccgacgtcgtagagcacctcg 130295
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>dbj|AP003456.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0542E10
          Length = 146196

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                      
Query: 221  tcagcacgcgcgacggcggaacccgacggcgctgccgccgacgttgtatagcacctcg 278
            |||||| |||| ||||||||| ||||||| || ||||||||||| ||| |||||||||
Sbjct: 6082 tcagcaggcgccacggcggaagccgacggagccgccgccgacgtcgtagagcacctcg 6025
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>ref|NM_192718.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1413

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                        
Query: 236  gcggaacccgacggcgctgccgccgacgttgtatagcacctcgatggtccgctgctggac 295
            |||||| |||| | ||| ||||||||||| ||| || |||||||  || |||||||| ||
Sbjct: 1398 gcggaagccgaagacgccgccgccgacgtcgtacaggacctcgaacgtgcgctgctgcac 1339

                      
Query: 296  gtggccgatg 305
            || |||||||
Sbjct: 1338 gttgccgatg 1329
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                            
Query: 236      gcggaacccgacggcgctgccgccgacgttgtatagcacctcgatggtccgctgctggac 295
                |||||| |||| | ||| ||||||||||| ||| || |||||||  || |||||||| ||
Sbjct: 24016037 gcggaagccgaagacgccgccgccgacgtcgtacaggacctcgaacgtgcgctgctgcac 24015978

                          
Query: 296      gtggccgatg 305
                || |||||||
Sbjct: 24015977 gttgccgatg 24015968
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>dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0090K04
          Length = 152556

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                          
Query: 236    gcggaacccgacggcgctgccgccgacgttgtatagcacctcgatggtccgctgctggac 295
              |||||| |||| | ||| ||||||||||| ||| || |||||||  || |||||||| ||
Sbjct: 130559 gcggaagccgaagacgccgccgccgacgtcgtacaggacctcgaacgtgcgctgctgcac 130500

                        
Query: 296    gtggccgatg 305
              || |||||||
Sbjct: 130499 gttgccgatg 130490
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>gb|AC113277.8| Mus musculus chromosome 3, clone RP23-386C15, complete sequence
          Length = 210390

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 89     cacacacaaaatacatgtaaa 109
              |||||||||||||||||||||
Sbjct: 105779 cacacacaaaatacatgtaaa 105759
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>gb|AC147575.1| Homo sapiens chromosome 5 clone RP11-998B18, complete sequence
          Length = 190680

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 85   aaatcacacacaaaatacat 104
            ||||||||||||||||||||
Sbjct: 9588 aaatcacacacaaaatacat 9607
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>gb|AC145138.2| Homo sapiens chromosome 5 clone RP11-1280N14, complete sequence
          Length = 199372

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    aaatcacacacaaaatacat 104
             ||||||||||||||||||||
Sbjct: 72436 aaatcacacacaaaatacat 72455
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>gb|AC142525.2| Homo sapiens chromosome 5 clone RP11-1275J23, complete sequence
          Length = 183459

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    aaatcacacacaaaatacat 104
             ||||||||||||||||||||
Sbjct: 79846 aaatcacacacaaaatacat 79865
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 325     cgccgccggtggaggcgaacgcga 348
               |||||| |||||||||||||||||
Sbjct: 1709582 cgccgcaggtggaggcgaacgcga 1709559
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>emb|AL583838.7| Human DNA sequence from clone RP11-536O4 on chromosome 6, complete
             sequence
          Length = 121958

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   tcaaacaggcttattttatc 155
             ||||||||||||||||||||
Sbjct: 32202 tcaaacaggcttattttatc 32221
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>emb|AL391600.16| Human DNA sequence from clone RP11-210L5 on chromosome 13, complete
             sequence
          Length = 176085

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 27    tcaaaatagaaaaatagatcttaa 50
             ||||||||||||||||||| ||||
Sbjct: 54865 tcaaaatagaaaaatagatattaa 54842
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>gb|AC146335.1| Homo sapiens chromosome 5 clone RP11-1305N21, complete sequence
          Length = 194399

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     aaatcacacacaaaatacat 104
              ||||||||||||||||||||
Sbjct: 132542 aaatcacacacaaaatacat 132523
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>emb|AL731861.9| Zebrafish DNA sequence from clone BUSM1-46I22 in linkage group 19,
            complete sequence
          Length = 87662

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 41   tagatcttaagcatcatttc 60
            ||||||||||||||||||||
Sbjct: 5406 tagatcttaagcatcatttc 5425
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>emb|AL672213.5| Zebrafish DNA sequence from clone BUSM1-73O4 Contains  part of a novel
             gene, a novel gene and part of a novel gene similar to
             STAT (signal transducer and activator of transcription)
             and a novel transposase pseudogene, complete sequence
          Length = 65728

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    tagatcttaagcatcatttc 60
             ||||||||||||||||||||
Sbjct: 41602 tagatcttaagcatcatttc 41583
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>emb|AL672145.5| Zebrafish DNA sequence from clone BUSM1-182H3 Contains the slc40a1
            gene (solute carrier family 40 (iron-regulated
            transporter), member 1), a novel gene and the 5' part of
            a gene similar to STAT4 (signal transducer and activator
            of transcription 4), complete sequence
          Length = 98868

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 41   tagatcttaagcatcatttc 60
            ||||||||||||||||||||
Sbjct: 5598 tagatcttaagcatcatttc 5617
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>emb|AL596027.11| Zebrafish DNA sequence from clone XX-51F19 in linkage group 19 Contains
             part of novel genes similar to human STAT1 and STAT4
             (signal transduction and activator of transcription) and a
             CpG island, complete sequence
          Length = 72221

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    tagatcttaagcatcatttc 60
             ||||||||||||||||||||
Sbjct: 49821 tagatcttaagcatcatttc 49840
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>gb|AC119735.3| Homo sapiens 3 BAC RP11-78E9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 69953

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    acaaaatacatgtaaaggga 113
             ||||||||||||||||||||
Sbjct: 67952 acaaaatacatgtaaaggga 67971
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>gb|AC109487.3| Homo sapiens chromosome 5 clone RP11-551B22, complete sequence
          Length = 155249

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     aaatcacacacaaaatacat 104
              ||||||||||||||||||||
Sbjct: 109524 aaatcacacacaaaatacat 109505
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                           
Query: 239     gaacccgacggcgctgccgccgacgttg 266
               |||||||| |||||||||||||||||||
Sbjct: 2443316 gaacccga-ggcgctgccgccgacgttg 2443290
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>gb|AC010355.7| Homo sapiens chromosome 5 clone CTD-2027K22, complete sequence
          Length = 198396

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    aaatcacacacaaaatacat 104
             ||||||||||||||||||||
Sbjct: 30260 aaatcacacacaaaatacat 30279
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 244    cgacggcgctgccgccgacg 263
              ||||||||||||||||||||
Sbjct: 598564 cgacggcgctgccgccgacg 598583
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>gb|AC044797.5|AC044797 Homo sapiens chromosome 5 clone RP11-195E2, complete sequence
          Length = 190871

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     aaatcacacacaaaatacat 104
              ||||||||||||||||||||
Sbjct: 172891 aaatcacacacaaaatacat 172910
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>emb|BX649377.8| Zebrafish DNA sequence from clone CH211-196J1 in linkage group 19,
            complete sequence
          Length = 217898

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 41   tagatcttaagcatcatttc 60
            ||||||||||||||||||||
Sbjct: 6626 tagatcttaagcatcatttc 6607
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>gb|AC138827.3| Homo sapiens chromosome 5 clone RP11-1151M9, complete sequence
          Length = 149397

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     aaatcacacacaaaatacat 104
              ||||||||||||||||||||
Sbjct: 131397 aaatcacacacaaaatacat 131416
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>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome
          Length = 4202352

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 16      tgatttcctcgtcaaaatag 35
               ||||||||||||||||||||
Sbjct: 2392531 tgatttcctcgtcaaaatag 2392512
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>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:B1172G12
          Length = 171974

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 318  ccgtcgccgccgccggtggaggcg 341
            |||||||||||| |||||||||||
Sbjct: 5573 ccgtcgccgccggcggtggaggcg 5596
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>dbj|AP003510.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0528E04
          Length = 170701

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 318    ccgtcgccgccgccggtggaggcg 341
              |||||||||||| |||||||||||
Sbjct: 150942 ccgtcgccgccggcggtggaggcg 150965



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 318    ccgtcgccgccgccggtggaggcg 341
              |||||||||||| |||||||||||
Sbjct: 135822 ccgtcgccgccggcggtggaggcg 135845
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>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1756_H07
          Length = 217205

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 248    ggcgctgccgccgacgttgt 267
              ||||||||||||||||||||
Sbjct: 153857 ggcgctgccgccgacgttgt 153876
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>dbj|AK063231.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-F05, full
           insert sequence
          Length = 786

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 248 ggcgctgccgccgacgttgt 267
           ||||||||||||||||||||
Sbjct: 52  ggcgctgccgccgacgttgt 33
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>emb|AL672166.8| Zebrafish DNA sequence from clone XX-134G18, complete sequence
          Length = 74692

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    tagatcttaagcatcatttc 60
             ||||||||||||||||||||
Sbjct: 21821 tagatcttaagcatcatttc 21840
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>emb|CT572983.7| Mouse DNA sequence from clone RP23-110N1 on chromosome 14, complete
              sequence
          Length = 218673

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     atcacacacaaaatacatgt 106
              ||||||||||||||||||||
Sbjct: 129497 atcacacacaaaatacatgt 129516
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>emb|AL450303.10| Human DNA sequence from clone RP11-245D2 on chromosome 1 Contains four
             genes for novel 7 transmembrane receptor (rhodopsin
             family) proteins, the OR2M7 gene for olfactory receptor,
             family 2, subfamily M, member 7 and the OR5BF1 gene for
             olfactory receptor, family 5, subfamily BF, member 1,
             complete sequence
          Length = 159867

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    cacacacaaaatacatgtaa 108
             ||||||||||||||||||||
Sbjct: 96527 cacacacaaaatacatgtaa 96546
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>emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on chromosome X, complete
             sequence
          Length = 201821

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    cacacacaaaatacatgtaa 108
             ||||||||||||||||||||
Sbjct: 22753 cacacacaaaatacatgtaa 22772
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>dbj|AP006146.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT34M22, TM0282,
           complete sequence
          Length = 107979

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 61  atacaataagcttttacaat 80
           ||||||||||||||||||||
Sbjct: 902 atacaataagcttttacaat 921
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>emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chromosome 4, complete
              sequence
          Length = 205589

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    ccctatagacatgccccaag 191
              ||||||||||||||||||||
Sbjct: 200586 ccctatagacatgccccaag 200605


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,275,053
Number of Sequences: 3902068
Number of extensions: 4275053
Number of successful extensions: 105490
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 104676
Number of HSP's gapped (non-prelim): 807
length of query: 444
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 422
effective length of database: 17,147,199,772
effective search space: 7236118303784
effective search space used: 7236118303784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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